Wall clock time and date at job start Tue Mar 31 2020 12:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36014 * 119.53254 * 2 1 4 4 C 1.40551 * 119.73239 * 179.97438 * 3 2 1 5 5 C 1.40527 * 121.23203 * 180.02562 * 4 3 2 6 6 C 1.36096 * 119.67635 * 179.97438 * 5 4 3 7 7 C 1.39382 * 121.00078 * 0.02562 * 6 5 4 8 8 C 1.36088 * 120.97965 * 0.02562 * 7 6 5 9 9 C 1.40583 * 119.66157 * 359.96190 * 8 7 6 10 10 C 1.40407 * 121.24066 * 180.02562 * 9 8 7 11 11 C 1.36607 * 119.62755 * 180.02562 * 10 9 8 12 12 O 1.35884 * 119.57092 * 180.28307 * 11 10 9 13 13 C 1.42901 * 116.99982 * 5.99403 * 12 11 10 14 14 H 1.08997 * 109.46925 * 39.69291 * 13 12 11 15 15 C 1.50697 * 109.46877 * 279.69129 * 13 12 11 16 16 H 1.08000 * 120.00256 * 125.24488 * 15 13 12 17 17 C 1.37875 * 120.00106 * 305.23787 * 15 13 12 18 18 N 1.31515 * 120.00058 * 9.23861 * 17 15 13 19 19 Si 1.86795 * 120.00114 * 189.23864 * 17 15 13 20 20 H 1.48500 * 109.47402 * 90.00471 * 19 17 15 21 21 H 1.48503 * 109.47173 * 210.00039 * 19 17 15 22 22 H 1.48493 * 109.47301 * 330.00187 * 19 17 15 23 23 C 1.50696 * 109.46737 * 159.68952 * 13 12 11 24 24 C 1.38235 * 120.00207 * 30.20255 * 23 13 12 25 25 C 1.38239 * 119.99978 * 179.80887 * 24 23 13 26 26 C 1.38235 * 119.99680 * 0.39349 * 25 24 23 27 27 C 1.38233 * 120.00401 * 359.86237 * 26 25 24 28 28 C 1.38234 * 120.00039 * 359.95150 * 27 26 25 29 29 H 1.08995 * 109.47198 * 270.02260 * 1 2 3 30 30 H 1.08999 * 109.46901 * 30.02528 * 1 2 3 31 31 H 1.09003 * 109.46899 * 150.02394 * 1 2 3 32 32 H 1.08002 * 120.13627 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.16488 * 359.96674 * 5 4 3 34 34 H 1.08000 * 119.50576 * 179.97438 * 6 5 4 35 35 H 1.08001 * 119.51483 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.17106 * 179.97438 * 8 7 6 37 37 H 1.08009 * 120.18889 * 0.02562 * 10 9 8 38 38 H 0.97004 * 120.00251 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.00380 * 359.97438 * 24 23 13 40 40 H 1.07996 * 120.00264 * 180.23239 * 25 24 23 41 41 H 1.08008 * 119.99695 * 179.83479 * 26 25 24 42 42 H 1.07998 * 120.00232 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.00435 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1775 1.1834 0.0000 4 6 3.5830 1.1883 0.0005 5 6 4.3074 2.3925 0.0011 6 6 5.6680 2.3603 0.0021 7 6 6.3574 1.1489 0.0022 8 6 5.6899 -0.0370 0.0006 9 6 4.2840 -0.0440 -0.0003 10 6 3.5619 -1.2481 -0.0013 11 6 2.1962 -1.2165 -0.0027 12 8 1.4984 -2.3825 0.0021 13 6 2.2517 -3.5888 0.1413 14 1 3.0520 -3.4359 0.8653 15 6 2.8453 -3.9669 -1.1912 16 1 3.9092 -4.1290 -1.2821 17 6 2.0301 -4.1060 -2.2945 18 7 0.7699 -3.7352 -2.2319 19 14 2.7157 -4.8210 -3.8781 20 1 2.5404 -6.2956 -3.8721 21 1 1.9912 -4.2412 -5.0375 22 1 4.1605 -4.4948 -3.9839 23 6 1.3460 -4.6941 0.6197 24 6 0.0067 -4.6873 0.2773 25 6 -0.8232 -5.7034 0.7128 26 6 -0.3156 -6.7220 1.4976 27 6 1.0225 -6.7260 1.8444 28 6 1.8533 -5.7120 1.4057 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6321 2.1156 -0.0004 33 1 3.7871 3.3389 0.0006 34 1 6.2220 3.2874 0.0022 35 1 7.4374 1.1513 0.0026 36 1 6.2373 -0.9680 0.0002 37 1 4.0831 -2.1941 -0.0011 38 1 0.1965 -3.8327 -3.0082 39 1 -0.3906 -3.8897 -0.3327 40 1 -1.8687 -5.7002 0.4422 41 1 -0.9646 -7.5144 1.8401 42 1 1.4190 -7.5215 2.4578 43 1 2.8988 -5.7153 1.6763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234107243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:04 Heat of formation + Delta-G solvation = 27.457145 kcal Electronic energy + Delta-G solvation = -26055.232203 eV Core-core repulsion = 22609.093372 eV Total energy + Delta-G solvation = -3446.138831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.02534 -38.60075 -37.51999 -35.40240 -32.92351 -32.23707 -31.06284 -30.57715 -29.90546 -28.06118 -27.05593 -26.26471 -23.61343 -22.22079 -21.63961 -21.51319 -21.36673 -20.03808 -17.70214 -16.70238 -16.40647 -15.97331 -15.60485 -15.01982 -14.57845 -14.40025 -14.04320 -13.95849 -13.80298 -13.43622 -13.08666 -12.92524 -12.56349 -12.45123 -12.43346 -12.35416 -11.82950 -11.78813 -11.71933 -11.52388 -11.11677 -11.04535 -10.74635 -10.63157 -10.46265 -10.24697 -10.18927 -10.06492 -9.50655 -9.40875 -9.11513 -8.71154 -7.99989 -7.68930 -7.56276 -6.89786 -6.20560 -4.39863 1.08271 1.65391 2.27215 2.38577 2.62692 3.19678 3.27015 3.29346 3.58094 4.24893 4.40637 4.70020 4.79823 5.07116 5.10370 5.24338 5.34472 5.49320 5.65890 5.66589 5.71413 5.75958 5.76618 5.88125 5.92028 6.10275 6.17825 6.19188 6.29317 6.34040 6.39197 6.50959 6.53350 6.63336 6.64761 6.69051 6.85050 6.89043 6.93394 7.04935 7.12323 7.24905 7.31293 7.39949 7.45749 7.55167 7.65807 7.78594 7.83175 8.01646 8.45690 8.84135 9.33180 10.76264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.004554 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.059362 B = 6146.855536 C = 6724.819455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.095 4.095 4 C -0.094 4.094 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.011 4.011 10 C -0.218 4.218 11 C 0.184 3.816 12 O -0.281 6.281 13 C 0.240 3.760 14 H 0.033 0.967 15 C -0.553 4.553 16 H 0.067 0.933 17 C 0.089 3.911 18 N -0.838 5.838 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.034 4.034 24 C -0.068 4.068 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.126 4.126 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.264 0.736 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 5.815 5.385 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.112 4.112 6 C -0.167 4.167 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.011 4.011 10 C -0.237 4.237 11 C 0.135 3.865 12 O -0.192 6.192 13 C 0.186 3.814 14 H 0.051 0.949 15 C -0.590 4.590 16 H 0.085 0.915 17 C -0.120 4.120 18 N -0.472 5.472 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.034 4.034 24 C -0.087 4.087 25 C -0.160 4.160 26 C -0.165 4.165 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.168 0.832 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.276 5.767 5.262 7.911 hybrid contribution 0.668 -0.697 -1.172 1.518 sum 1.944 5.070 4.090 6.798 Atomic orbital electron populations 1.20652 0.90962 1.03010 1.01654 1.19150 0.96543 0.90847 1.03325 1.20585 0.92620 0.96846 1.01271 1.17920 0.93334 0.92880 1.05260 1.20868 0.94187 0.96629 0.99522 1.20590 0.94405 0.97453 1.04278 1.20681 0.99284 0.92640 1.01394 1.20979 0.93264 0.98029 1.01012 1.17901 0.93138 0.92528 0.97556 1.21147 0.93689 0.98017 1.10799 1.18507 0.90185 0.87034 0.90754 1.86187 1.37073 1.11973 1.83991 1.18945 0.87786 0.79082 0.95541 0.94891 1.21284 0.94313 1.50701 0.92655 0.91512 1.24927 0.94749 0.93505 0.98788 1.69950 1.05380 1.41827 1.30020 0.86632 0.79519 0.79519 0.82715 1.20334 1.20982 1.19644 1.19902 0.94238 0.96229 0.93069 1.21509 0.92991 0.98538 0.95636 1.21142 0.99275 0.95892 0.99654 1.20861 0.95436 0.99066 1.01123 1.20785 0.94063 0.98757 1.02049 1.20762 0.98983 0.95401 0.99280 0.92013 0.92632 0.89841 0.85983 0.86572 0.87056 0.86955 0.86205 0.84251 0.92583 0.83209 0.87621 0.87837 0.87544 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.75 36.01 0.35 -1.42 16 2 C -0.10 -1.86 5.86 -104.83 -0.61 -2.47 16 3 C -0.10 -1.61 9.36 -39.51 -0.37 -1.98 16 4 C -0.09 -1.64 5.74 -106.81 -0.61 -2.25 16 5 C -0.09 -1.39 9.77 -39.49 -0.39 -1.77 16 6 C -0.15 -2.06 9.95 -39.93 -0.40 -2.45 16 7 C -0.12 -1.75 9.95 -39.93 -0.40 -2.15 16 8 C -0.11 -1.90 9.77 -39.47 -0.39 -2.28 16 9 C -0.01 -0.21 5.74 -106.84 -0.61 -0.82 16 10 C -0.22 -4.53 8.30 -39.35 -0.33 -4.86 16 11 C 0.18 3.98 6.50 -39.58 -0.26 3.72 16 12 O -0.28 -6.54 6.66 -19.38 -0.13 -6.66 16 13 C 0.24 5.59 2.11 -29.04 -0.06 5.53 16 14 H 0.03 0.74 6.57 -51.93 -0.34 0.40 16 15 C -0.55 -13.91 7.41 -34.44 -0.26 -14.17 16 16 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 17 C 0.09 2.27 5.21 -17.82 -0.09 2.18 16 18 N -0.84 -21.51 9.49 55.43 0.53 -20.98 16 19 Si 0.89 20.39 29.55 -169.99 -5.02 15.37 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 C -0.03 -0.76 4.83 -104.62 -0.51 -1.26 16 24 C -0.07 -1.51 8.09 -39.58 -0.32 -1.83 16 25 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 27 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 28 C -0.13 -2.52 9.70 -39.58 -0.38 -2.91 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.08 1.58 7.49 -51.93 -0.39 1.19 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.14 2.98 5.45 -52.48 -0.29 2.70 16 38 H 0.26 6.57 8.31 -40.82 -0.34 6.24 16 39 H 0.15 3.57 5.93 -52.49 -0.31 3.26 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -27.05 355.49 -11.61 -38.66 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.52 Total: 8.49 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: -6.82 Total: -40.24 kcal Atomic # 7 Polarization: -21.51 SS G_CDS: 0.53 Total: -20.98 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.13 Total: -6.66 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.05 -11.61 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234107243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.121 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds