Wall clock time and date at job start Tue Mar 31 2020 12:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36014 * 119.53254 * 2 1 4 4 C 1.40551 * 119.73239 * 179.97438 * 3 2 1 5 5 C 1.40527 * 121.23203 * 180.02562 * 4 3 2 6 6 C 1.36096 * 119.67635 * 179.97438 * 5 4 3 7 7 C 1.39382 * 121.00078 * 0.02562 * 6 5 4 8 8 C 1.36088 * 120.97965 * 0.02562 * 7 6 5 9 9 C 1.40583 * 119.66157 * 359.96190 * 8 7 6 10 10 C 1.40407 * 121.24066 * 180.02562 * 9 8 7 11 11 C 1.36607 * 119.62755 * 180.02562 * 10 9 8 12 12 O 1.35884 * 119.57092 * 180.28307 * 11 10 9 13 13 C 1.42901 * 116.99982 * 5.99403 * 12 11 10 14 14 H 1.08997 * 109.46925 * 39.69291 * 13 12 11 15 15 C 1.50697 * 109.46877 * 279.69129 * 13 12 11 16 16 H 1.08000 * 120.00256 * 125.24488 * 15 13 12 17 17 C 1.37875 * 120.00106 * 305.23787 * 15 13 12 18 18 N 1.31515 * 120.00058 * 9.23861 * 17 15 13 19 19 Si 1.86795 * 120.00114 * 189.23864 * 17 15 13 20 20 H 1.48500 * 109.47402 * 90.00471 * 19 17 15 21 21 H 1.48503 * 109.47173 * 210.00039 * 19 17 15 22 22 H 1.48493 * 109.47301 * 330.00187 * 19 17 15 23 23 C 1.50696 * 109.46737 * 159.68952 * 13 12 11 24 24 C 1.38235 * 120.00207 * 30.20255 * 23 13 12 25 25 C 1.38239 * 119.99978 * 179.80887 * 24 23 13 26 26 C 1.38235 * 119.99680 * 0.39349 * 25 24 23 27 27 C 1.38233 * 120.00401 * 359.86237 * 26 25 24 28 28 C 1.38234 * 120.00039 * 359.95150 * 27 26 25 29 29 H 1.08995 * 109.47198 * 270.02260 * 1 2 3 30 30 H 1.08999 * 109.46901 * 30.02528 * 1 2 3 31 31 H 1.09003 * 109.46899 * 150.02394 * 1 2 3 32 32 H 1.08002 * 120.13627 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.16488 * 359.96674 * 5 4 3 34 34 H 1.08000 * 119.50576 * 179.97438 * 6 5 4 35 35 H 1.08001 * 119.51483 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.17106 * 179.97438 * 8 7 6 37 37 H 1.08009 * 120.18889 * 0.02562 * 10 9 8 38 38 H 0.97004 * 120.00251 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.00380 * 359.97438 * 24 23 13 40 40 H 1.07996 * 120.00264 * 180.23239 * 25 24 23 41 41 H 1.08008 * 119.99695 * 179.83479 * 26 25 24 42 42 H 1.07998 * 120.00232 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.00435 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1775 1.1834 0.0000 4 6 3.5830 1.1883 0.0005 5 6 4.3074 2.3925 0.0011 6 6 5.6680 2.3603 0.0021 7 6 6.3574 1.1489 0.0022 8 6 5.6899 -0.0370 0.0006 9 6 4.2840 -0.0440 -0.0003 10 6 3.5619 -1.2481 -0.0013 11 6 2.1962 -1.2165 -0.0027 12 8 1.4984 -2.3825 0.0021 13 6 2.2517 -3.5888 0.1413 14 1 3.0520 -3.4359 0.8653 15 6 2.8453 -3.9669 -1.1912 16 1 3.9092 -4.1290 -1.2821 17 6 2.0301 -4.1060 -2.2945 18 7 0.7699 -3.7352 -2.2319 19 14 2.7157 -4.8210 -3.8781 20 1 2.5404 -6.2956 -3.8721 21 1 1.9912 -4.2412 -5.0375 22 1 4.1605 -4.4948 -3.9839 23 6 1.3460 -4.6941 0.6197 24 6 0.0067 -4.6873 0.2773 25 6 -0.8232 -5.7034 0.7128 26 6 -0.3156 -6.7220 1.4976 27 6 1.0225 -6.7260 1.8444 28 6 1.8533 -5.7120 1.4057 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6321 2.1156 -0.0004 33 1 3.7871 3.3389 0.0006 34 1 6.2220 3.2874 0.0022 35 1 7.4374 1.1513 0.0026 36 1 6.2373 -0.9680 0.0002 37 1 4.0831 -2.1941 -0.0011 38 1 0.1965 -3.8327 -3.0082 39 1 -0.3906 -3.8897 -0.3327 40 1 -1.8687 -5.7002 0.4422 41 1 -0.9646 -7.5144 1.8401 42 1 1.4190 -7.5215 2.4578 43 1 2.8988 -5.7153 1.6763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234107243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:03 Heat of formation + Delta-G solvation = 17.931991 kcal Electronic energy + Delta-G solvation = -26055.645245 eV Core-core repulsion = 22609.093372 eV Total energy + Delta-G solvation = -3446.551873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43588 -40.12898 -38.99692 -36.82187 -34.74416 -33.57936 -32.58583 -32.00205 -31.44236 -29.44331 -28.83000 -27.55935 -25.35846 -23.67440 -23.12569 -22.86929 -22.70166 -21.61529 -19.34518 -18.17278 -17.95013 -17.37346 -17.13977 -16.78614 -15.95661 -15.88495 -15.65455 -15.38593 -15.23596 -14.95397 -14.63649 -14.27234 -13.98801 -13.85647 -13.72903 -13.70487 -13.51530 -13.34144 -13.24604 -13.01110 -12.87845 -12.51375 -12.46251 -12.23662 -11.83194 -11.79002 -11.64336 -11.52789 -11.11978 -10.98583 -10.67907 -10.49541 -9.54425 -9.28452 -8.92152 -8.39056 -8.09581 -6.36243 -0.21976 0.31749 0.71871 0.84590 1.28207 1.33179 1.35731 1.42444 2.24541 2.34502 2.78781 3.18944 3.22933 3.33814 3.82444 4.04797 4.16356 4.22801 4.24604 4.31027 4.34347 4.44622 4.49400 4.51568 4.54629 4.64251 4.74253 4.81681 4.89067 4.94894 4.98061 5.03601 5.09098 5.24340 5.31190 5.32617 5.35739 5.50881 5.58608 5.60439 5.68058 5.75182 5.77944 5.84734 5.94384 5.98086 6.04097 6.18621 6.25432 6.41675 6.56654 7.10610 7.39083 8.82548 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.004554 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.059362 B = 6146.855536 C = 6724.819455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.111 4.111 5 C -0.094 4.094 6 C -0.143 4.143 7 C -0.108 4.108 8 C -0.143 4.143 9 C -0.034 4.034 10 C -0.237 4.237 11 C 0.149 3.851 12 O -0.295 6.295 13 C 0.244 3.756 14 H 0.022 0.978 15 C -0.565 4.565 16 H 0.052 0.948 17 C 0.052 3.948 18 N -0.851 5.851 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.061 4.061 24 C -0.089 4.089 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.261 0.739 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 7.352 6.070 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.097 4.097 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.161 4.161 7 C -0.126 4.126 8 C -0.162 4.162 9 C -0.034 4.034 10 C -0.256 4.256 11 C 0.101 3.899 12 O -0.207 6.207 13 C 0.190 3.810 14 H 0.040 0.960 15 C -0.602 4.602 16 H 0.071 0.929 17 C -0.155 4.155 18 N -0.485 5.485 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.062 4.062 24 C -0.108 4.108 25 C -0.165 4.165 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.159 4.159 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.745 7.309 5.952 9.586 hybrid contribution 0.672 -1.038 -1.296 1.792 sum 2.416 6.271 4.656 8.175 Atomic orbital electron populations 1.20567 0.89732 1.02648 1.02281 1.19430 0.97661 0.90597 1.04928 1.21012 0.92725 0.97417 0.98567 1.18293 0.93940 0.93473 1.05363 1.21271 0.94828 0.96711 0.98323 1.21106 0.94401 0.98650 1.01929 1.21127 1.01038 0.91961 0.98488 1.21119 0.92552 0.99457 1.03024 1.18148 0.94381 0.92496 0.98399 1.21079 0.93802 0.98258 1.12460 1.18986 0.90814 0.87513 0.92559 1.86139 1.37236 1.12422 1.84935 1.18814 0.88022 0.79767 0.94404 0.95977 1.21384 0.93706 1.50954 0.94135 0.92942 1.25460 0.95157 0.94063 1.00808 1.70088 1.05812 1.42472 1.30150 0.85901 0.78689 0.78916 0.80238 1.20064 1.20769 1.19933 1.19989 0.94544 0.96795 0.94869 1.21343 0.93463 0.99248 0.96741 1.21406 1.00032 0.95484 0.99567 1.21307 0.95887 0.99032 0.99454 1.21221 0.93988 0.98541 1.01264 1.21006 0.99954 0.95605 0.99300 0.90893 0.89752 0.93240 0.82045 0.82993 0.83030 0.83746 0.86310 0.86570 0.92922 0.85892 0.85544 0.83827 0.83789 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.27 9.75 71.24 0.69 -2.58 16 2 C -0.13 -4.92 5.86 -20.00 -0.12 -5.03 16 3 C -0.08 -2.60 9.36 22.32 0.21 -2.40 16 4 C -0.11 -3.75 5.74 -21.28 -0.12 -3.87 16 5 C -0.09 -2.41 9.77 22.33 0.22 -2.19 16 6 C -0.14 -3.33 9.95 22.05 0.22 -3.11 16 7 C -0.11 -2.82 9.95 22.04 0.22 -2.60 16 8 C -0.14 -4.79 9.77 22.34 0.22 -4.57 16 9 C -0.03 -1.33 5.74 -21.30 -0.12 -1.45 16 10 C -0.24 -10.73 8.30 22.42 0.19 -10.55 16 11 C 0.15 6.95 6.50 22.27 0.14 7.10 16 12 O -0.30 -14.97 6.66 -92.25 -0.61 -15.59 16 13 C 0.24 12.36 2.11 29.10 0.06 12.42 16 14 H 0.02 1.12 6.57 -2.39 -0.02 1.10 16 15 C -0.57 -30.56 7.41 25.60 0.19 -30.37 16 16 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 17 C 0.05 2.78 5.21 84.65 0.44 3.22 16 18 N -0.85 -46.26 9.49 21.45 0.20 -46.05 16 19 Si 0.94 43.51 29.55 68.60 2.03 45.53 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 C -0.06 -2.91 4.83 -19.87 -0.10 -3.01 16 24 C -0.09 -4.15 8.09 22.27 0.18 -3.97 16 25 C -0.15 -5.65 10.05 22.27 0.22 -5.42 16 26 C -0.14 -4.63 10.05 22.27 0.22 -4.41 16 27 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 28 C -0.14 -5.74 9.70 22.27 0.22 -5.53 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.05 2.01 7.49 -2.39 -0.02 1.99 16 32 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.12 5.60 5.45 -2.91 -0.02 5.59 16 38 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.12 6.32 5.93 -2.91 -0.02 6.30 16 40 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -64.00 355.49 6.04 -57.96 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 1.01 Total: 30.75 kcal Atomic # 6 Polarization: -76.02 SS G_CDS: 3.41 Total: -72.61 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.20 Total: -46.05 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.61 Total: -15.59 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.00 6.04 -57.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234107243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds