Wall clock time and date at job start Tue Mar 31 2020 13:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99892 * 2 1 4 4 C 1.38855 * 119.98957 * 359.97438 * 3 2 1 5 5 C 1.38225 * 120.20739 * 180.02562 * 4 3 2 6 6 C 1.38041 * 120.19215 * 0.25178 * 5 4 3 7 7 C 1.39450 * 119.97331 * 359.43830 * 6 5 4 8 8 C 1.48183 * 120.09975 * 180.27412 * 7 6 5 9 9 C 1.36676 * 120.34425 * 65.03461 * 8 7 6 10 10 C 1.41124 * 120.58920 * 179.76936 * 9 8 7 11 11 C 1.41214 * 119.49319 * 180.26084 * 10 9 8 12 12 H 1.08005 * 119.99527 * 25.88246 * 11 10 9 13 13 C 1.39924 * 120.00252 * 205.88122 * 11 10 9 14 14 N 1.30828 * 120.00293 * 18.22066 * 13 11 10 15 15 Si 1.86804 * 119.99912 * 198.21626 * 13 11 10 16 16 H 1.48499 * 109.47117 * 60.00080 * 15 13 11 17 17 H 1.48499 * 109.46911 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47417 * 300.00173 * 15 13 11 19 19 C 1.39963 * 121.01895 * 0.48557 * 10 9 8 20 20 C 1.39891 * 120.11145 * 359.78153 * 19 10 9 21 21 C 1.40861 * 121.14354 * 179.97438 * 20 19 10 22 22 C 1.36187 * 119.60255 * 180.02562 * 21 20 19 23 23 C 1.39244 * 120.95131 * 359.97438 * 22 21 20 24 24 C 1.36545 * 120.97355 * 0.02562 * 23 22 21 25 25 C 1.39812 * 119.73605 * 359.95727 * 24 23 22 26 26 C 1.38471 * 119.99064 * 179.97438 * 3 2 1 27 27 C 1.50702 * 120.09502 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47701 * 300.00038 * 1 2 3 30 30 H 1.09009 * 109.47425 * 60.00219 * 1 2 3 31 31 H 1.08005 * 119.89456 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.89857 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.00745 * 179.72141 * 6 5 4 34 34 H 1.08000 * 119.70501 * 359.97438 * 9 8 7 35 35 H 0.96993 * 120.00566 * 179.97438 * 14 13 11 36 36 H 1.07998 * 119.94167 * 179.74848 * 19 10 9 37 37 H 1.07995 * 120.19571 * 0.03829 * 21 20 19 38 38 H 1.08006 * 119.52480 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.51422 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.12692 * 180.02562 * 24 23 22 41 41 H 1.08999 * 109.46789 * 90.00211 * 27 26 3 42 42 H 1.09003 * 109.46780 * 210.00409 * 27 26 3 43 43 H 1.08998 * 109.47106 * 330.00386 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3754 -0.0005 5 6 1.9123 3.6093 -0.0011 6 6 3.2903 3.6915 -0.0063 7 6 4.0576 2.5271 0.0007 8 6 5.5370 2.6121 0.0013 9 6 6.1971 3.1547 1.0680 10 6 7.6061 3.2337 1.0760 11 6 8.2646 3.7938 2.1927 12 1 7.7928 3.7734 3.1640 13 6 9.5283 4.3750 2.0407 14 7 9.9489 4.7249 0.8523 15 14 10.6149 4.6516 3.5348 16 1 10.8956 3.3491 4.1906 17 1 11.8925 5.2773 3.1087 18 1 9.9203 5.5486 4.4929 19 6 8.3607 2.7699 -0.0076 20 6 7.7218 2.2128 -1.1205 21 6 8.4598 1.7398 -2.2231 22 6 7.8055 1.2037 -3.2905 23 6 6.4160 1.1156 -3.3082 24 6 5.6699 1.5644 -2.2563 25 6 6.3059 2.1208 -1.1424 26 6 3.4288 1.2832 0.0005 27 6 4.2515 0.0206 0.0017 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2110 2.3166 -0.0005 32 1 1.3190 4.5118 -0.0019 33 1 3.7737 4.6571 -0.0113 34 1 5.6355 3.5232 1.9137 35 1 10.8247 5.1281 0.7470 36 1 9.4380 2.8426 0.0152 37 1 9.5380 1.8016 -2.2219 38 1 8.3726 0.8417 -4.1354 39 1 5.9210 0.6866 -4.1668 40 1 4.5930 1.4890 -2.2844 41 1 4.4503 -0.2844 -1.0257 42 1 5.1953 0.2024 0.5159 43 1 3.7039 -0.7693 0.5157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238993756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:02 Heat of formation + Delta-G solvation = 13.226823 kcal Electronic energy + Delta-G solvation = -25744.903262 eV Core-core repulsion = 22298.147358 eV Total energy + Delta-G solvation = -3446.755904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15783 -38.85872 -37.21820 -35.65728 -33.68032 -32.63040 -31.26089 -29.75317 -29.47526 -27.78868 -27.47812 -26.18313 -25.27097 -22.65333 -21.69430 -21.48262 -21.02600 -19.74472 -18.00132 -16.95512 -16.19637 -16.05680 -15.85616 -15.65938 -15.33882 -14.97912 -14.44674 -13.93113 -13.73528 -13.48236 -13.13512 -12.92413 -12.63940 -12.51861 -12.31078 -12.05961 -11.98710 -11.87612 -11.78223 -11.50600 -11.26139 -11.02121 -10.97227 -10.89034 -10.73782 -10.70192 -10.44413 -9.96705 -9.67349 -9.55795 -9.16247 -8.67980 -8.24319 -7.90240 -7.49470 -6.88498 -6.70554 -4.40241 1.41120 1.69986 1.84377 2.30803 2.96761 3.01548 3.04984 3.20774 3.41366 3.83785 3.98120 4.06227 4.79399 4.90500 4.99781 5.07778 5.13062 5.32726 5.37293 5.49211 5.59024 5.63168 5.75848 5.77982 5.84757 5.92720 6.05434 6.15353 6.19153 6.25139 6.40474 6.54304 6.61533 6.63652 6.66949 6.74171 6.87909 6.89564 6.99709 7.05447 7.05667 7.29422 7.40500 7.46471 7.53894 7.56229 7.70316 7.89470 8.06880 8.15572 8.50440 8.72232 8.79039 10.05880 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.004199 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.877575 B = 6666.660379 C = 7979.818927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.118 3.882 4 C -0.216 4.216 5 C -0.090 4.090 6 C -0.141 4.141 7 C 0.018 3.982 8 C -0.052 4.052 9 C -0.123 4.123 10 C 0.101 3.899 11 C -0.450 4.450 12 H 0.080 0.920 13 C 0.075 3.925 14 N -0.778 5.778 15 Si 0.908 3.092 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.265 1.265 19 C -0.204 4.204 20 C 0.002 3.998 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.191 4.191 24 C -0.075 4.075 25 C -0.114 4.114 26 C -0.102 4.102 27 C -0.103 4.103 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.284 0.716 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -4.536 -1.799 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.074 3.926 4 C -0.235 4.235 5 C -0.108 4.108 6 C -0.159 4.159 7 C 0.018 3.982 8 C -0.052 4.052 9 C -0.141 4.141 10 C 0.098 3.902 11 C -0.478 4.478 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.402 5.402 15 Si 0.732 3.268 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.225 4.225 20 C 0.001 3.999 21 C -0.156 4.156 22 C -0.136 4.136 23 C -0.210 4.210 24 C -0.093 4.093 25 C -0.115 4.115 26 C -0.102 4.102 27 C -0.160 4.160 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.530 -4.593 -1.905 12.556 hybrid contribution 0.197 0.532 0.554 0.793 sum -11.333 -4.062 -1.351 12.114 Atomic orbital electron populations 1.22980 0.79146 1.03422 1.01064 1.86065 1.20656 1.27099 1.89078 1.18699 0.91621 0.83948 0.98354 1.21107 0.99364 0.92427 1.10559 1.20768 0.94458 0.96640 0.98938 1.21232 0.93248 0.98231 1.03186 1.18641 0.92881 0.91316 0.95351 1.19062 0.89009 1.01864 0.95311 1.21136 0.94837 1.01136 0.97023 1.17365 0.89801 0.89547 0.93450 1.19615 1.00667 1.31730 0.95827 0.90216 1.25905 0.98100 0.93334 0.97143 1.69823 1.18856 1.27521 1.23986 0.86363 0.79032 0.79672 0.81739 1.18662 1.20212 1.18929 1.21171 0.99484 1.06954 0.94853 1.17914 0.91590 0.96015 0.94358 1.20896 0.98646 1.01873 0.94208 1.20478 0.94353 1.00949 0.97859 1.20334 0.93928 1.07527 0.99174 1.20675 0.98210 0.97189 0.93255 1.18419 0.92256 1.06296 0.94497 1.19327 0.90056 0.95828 1.05034 1.20668 0.99211 0.93610 1.02476 0.88640 0.92959 0.92959 0.86080 0.86152 0.85705 0.87969 0.90535 0.86100 0.87376 0.88216 0.88331 0.87825 0.91222 0.90885 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.38 9.54 -19.45 -0.19 -4.57 16 3 C 0.12 1.83 6.65 -39.27 -0.26 1.57 16 4 C -0.22 -2.95 9.03 -39.36 -0.36 -3.31 16 5 C -0.09 -1.27 10.03 -39.66 -0.40 -1.66 16 6 C -0.14 -2.36 9.73 -39.20 -0.38 -2.74 16 7 C 0.02 0.34 4.55 -104.94 -0.48 -0.14 16 8 C -0.05 -1.12 4.20 -103.13 -0.43 -1.55 16 9 C -0.12 -2.82 9.32 -39.05 -0.36 -3.18 16 10 C 0.10 2.55 5.55 -107.03 -0.59 1.96 16 11 C -0.45 -11.28 8.99 -37.82 -0.34 -11.62 16 12 H 0.08 1.90 7.91 -52.48 -0.42 1.48 16 13 C 0.07 1.79 5.09 -17.35 -0.09 1.70 16 14 N -0.78 -19.38 11.00 55.55 0.61 -18.77 16 15 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 19 C -0.20 -5.19 8.39 -38.32 -0.32 -5.51 16 20 C 0.00 0.04 5.74 -106.88 -0.61 -0.58 16 21 C -0.14 -2.93 9.78 -39.33 -0.38 -3.31 16 22 C -0.12 -2.25 9.95 -39.95 -0.40 -2.65 16 23 C -0.19 -3.59 9.96 -39.82 -0.40 -3.99 16 24 C -0.08 -1.50 7.62 -39.60 -0.30 -1.81 16 25 C -0.11 -2.53 5.35 -104.66 -0.56 -3.09 16 26 C -0.10 -1.77 4.98 -104.11 -0.52 -2.29 16 27 C -0.10 -1.75 8.31 36.01 0.30 -1.46 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.05 0.43 7.66 -51.92 -0.40 0.03 16 31 H 0.12 1.30 6.28 -52.48 -0.33 0.97 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 36 H 0.12 3.19 6.15 -52.49 -0.32 2.86 16 37 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.10 1.96 6.13 -52.49 -0.32 1.64 16 41 H 0.07 1.17 6.72 -51.93 -0.35 0.82 16 42 H 0.07 1.36 6.94 -51.93 -0.36 1.00 16 43 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -27.26 352.24 -10.57 -37.84 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.38 Total: 9.72 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: -5.90 Total: -42.40 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.61 Total: -18.77 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.19 Total: -4.57 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.26 -10.57 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238993756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.065 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds