Wall clock time and date at job start Tue Mar 31 2020 13:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35909 * 116.99892 * 2 1 4 4 C 1.38855 * 119.98957 * 359.97438 * 3 2 1 5 5 C 1.38225 * 120.20739 * 180.02562 * 4 3 2 6 6 C 1.38041 * 120.19215 * 0.25178 * 5 4 3 7 7 C 1.39450 * 119.97331 * 359.43830 * 6 5 4 8 8 C 1.48183 * 120.09975 * 180.27412 * 7 6 5 9 9 C 1.36676 * 120.34425 * 65.03461 * 8 7 6 10 10 C 1.41124 * 120.58920 * 179.76936 * 9 8 7 11 11 C 1.41214 * 119.49319 * 180.26084 * 10 9 8 12 12 H 1.08005 * 119.99527 * 25.88246 * 11 10 9 13 13 C 1.39924 * 120.00252 * 205.88122 * 11 10 9 14 14 N 1.30828 * 120.00293 * 18.22066 * 13 11 10 15 15 Si 1.86804 * 119.99912 * 198.21626 * 13 11 10 16 16 H 1.48499 * 109.47117 * 60.00080 * 15 13 11 17 17 H 1.48499 * 109.46911 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47417 * 300.00173 * 15 13 11 19 19 C 1.39963 * 121.01895 * 0.48557 * 10 9 8 20 20 C 1.39891 * 120.11145 * 359.78153 * 19 10 9 21 21 C 1.40861 * 121.14354 * 179.97438 * 20 19 10 22 22 C 1.36187 * 119.60255 * 180.02562 * 21 20 19 23 23 C 1.39244 * 120.95131 * 359.97438 * 22 21 20 24 24 C 1.36545 * 120.97355 * 0.02562 * 23 22 21 25 25 C 1.39812 * 119.73605 * 359.95727 * 24 23 22 26 26 C 1.38471 * 119.99064 * 179.97438 * 3 2 1 27 27 C 1.50702 * 120.09502 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47701 * 300.00038 * 1 2 3 30 30 H 1.09009 * 109.47425 * 60.00219 * 1 2 3 31 31 H 1.08005 * 119.89456 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.89857 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.00745 * 179.72141 * 6 5 4 34 34 H 1.08000 * 119.70501 * 359.97438 * 9 8 7 35 35 H 0.96993 * 120.00566 * 179.97438 * 14 13 11 36 36 H 1.07998 * 119.94167 * 179.74848 * 19 10 9 37 37 H 1.07995 * 120.19571 * 0.03829 * 21 20 19 38 38 H 1.08006 * 119.52480 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.51422 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.12692 * 180.02562 * 24 23 22 41 41 H 1.08999 * 109.46789 * 90.00211 * 27 26 3 42 42 H 1.09003 * 109.46780 * 210.00409 * 27 26 3 43 43 H 1.08998 * 109.47106 * 330.00386 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3754 -0.0005 5 6 1.9123 3.6093 -0.0011 6 6 3.2903 3.6915 -0.0063 7 6 4.0576 2.5271 0.0007 8 6 5.5370 2.6121 0.0013 9 6 6.1971 3.1547 1.0680 10 6 7.6061 3.2337 1.0760 11 6 8.2646 3.7938 2.1927 12 1 7.7928 3.7734 3.1640 13 6 9.5283 4.3750 2.0407 14 7 9.9489 4.7249 0.8523 15 14 10.6149 4.6516 3.5348 16 1 10.8956 3.3491 4.1906 17 1 11.8925 5.2773 3.1087 18 1 9.9203 5.5486 4.4929 19 6 8.3607 2.7699 -0.0076 20 6 7.7218 2.2128 -1.1205 21 6 8.4598 1.7398 -2.2231 22 6 7.8055 1.2037 -3.2905 23 6 6.4160 1.1156 -3.3082 24 6 5.6699 1.5644 -2.2563 25 6 6.3059 2.1208 -1.1424 26 6 3.4288 1.2832 0.0005 27 6 4.2515 0.0206 0.0017 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2110 2.3166 -0.0005 32 1 1.3190 4.5118 -0.0019 33 1 3.7737 4.6571 -0.0113 34 1 5.6355 3.5232 1.9137 35 1 10.8247 5.1281 0.7470 36 1 9.4380 2.8426 0.0152 37 1 9.5380 1.8016 -2.2219 38 1 8.3726 0.8417 -4.1354 39 1 5.9210 0.6866 -4.1668 40 1 4.5930 1.4890 -2.2844 41 1 4.4503 -0.2844 -1.0257 42 1 5.1953 0.2024 0.5159 43 1 3.7039 -0.7693 0.5157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238993756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:01 Heat of formation + Delta-G solvation = 2.546679 kcal Electronic energy + Delta-G solvation = -25745.366388 eV Core-core repulsion = 22298.147358 eV Total energy + Delta-G solvation = -3447.219030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39595 -40.37839 -38.42743 -37.36869 -35.28820 -34.09101 -32.72886 -31.36052 -31.04848 -29.27555 -28.37803 -27.48664 -27.01913 -24.17800 -23.23051 -23.03022 -22.40254 -21.24200 -19.49446 -18.34054 -17.79913 -17.57976 -17.15488 -16.72084 -16.56683 -16.51389 -16.07547 -15.38309 -14.97762 -14.81552 -14.65325 -14.27069 -14.19638 -14.00077 -13.93797 -13.62941 -13.34045 -13.13965 -12.97292 -12.92752 -12.82118 -12.60820 -12.49922 -12.27024 -12.09108 -11.93374 -11.81496 -11.64803 -11.36833 -11.23073 -10.91399 -10.34282 -9.58061 -9.24241 -9.07391 -8.67682 -8.42439 -6.30350 -0.07847 0.39688 0.49624 0.60488 1.35396 1.40131 1.48848 1.55233 2.17333 2.29660 2.42936 2.77950 3.03735 3.72346 3.81045 3.87957 4.09768 4.11596 4.19170 4.30880 4.33686 4.35268 4.46123 4.51919 4.62954 4.66066 4.76024 4.77409 4.79379 4.80599 4.85692 4.94572 4.96964 5.18088 5.21160 5.27934 5.32785 5.39036 5.47222 5.57480 5.65052 5.71418 5.75460 5.83504 5.88845 6.00358 6.08060 6.25509 6.44912 6.50667 6.65791 6.87082 6.95516 8.29285 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.004199 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.877575 B = 6666.660379 C = 7979.818927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.120 3.880 4 C -0.204 4.204 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.008 4.008 8 C -0.034 4.034 9 C -0.151 4.151 10 C 0.079 3.921 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.036 3.964 14 N -0.814 5.814 15 Si 0.980 3.020 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.257 1.257 19 C -0.234 4.234 20 C -0.021 4.021 21 C -0.161 4.161 22 C -0.105 4.105 23 C -0.181 4.181 24 C -0.078 4.078 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.094 4.094 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.289 0.711 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -5.423 -3.074 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.075 3.925 4 C -0.222 4.222 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.008 4.008 8 C -0.035 4.035 9 C -0.169 4.169 10 C 0.077 3.923 11 C -0.517 4.517 12 H 0.098 0.902 13 C -0.180 4.180 14 N -0.439 5.439 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.181 1.181 19 C -0.254 4.254 20 C -0.021 4.021 21 C -0.179 4.179 22 C -0.123 4.123 23 C -0.199 4.199 24 C -0.095 4.095 25 C -0.131 4.131 26 C -0.120 4.120 27 C -0.151 4.151 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.607 -5.491 -3.192 15.928 hybrid contribution 0.888 0.656 0.748 1.333 sum -13.719 -4.835 -2.444 14.750 Atomic orbital electron populations 1.23358 0.76458 1.05511 1.02345 1.86051 1.23383 1.26323 1.88695 1.18740 0.91006 0.85328 0.97437 1.21522 1.01189 0.91317 1.08169 1.21120 0.93256 0.98421 0.96887 1.21291 0.94737 0.97228 1.04302 1.18538 0.91153 0.92869 0.98252 1.19355 0.91014 0.99069 0.94030 1.21173 0.94196 1.03374 0.98204 1.17675 0.91032 0.89826 0.93774 1.19864 1.02281 1.33606 0.95933 0.90250 1.26742 0.98818 0.92427 1.00045 1.69898 1.19474 1.28471 1.26045 0.85281 0.77223 0.79542 0.77895 1.18569 1.19184 1.18102 1.21062 0.98556 1.09413 0.96383 1.18206 0.92783 0.96402 0.94705 1.21060 0.99054 1.03163 0.94655 1.20901 0.94890 0.98725 0.97775 1.20827 0.93904 1.05545 0.99597 1.20837 0.99028 0.96876 0.92802 1.18740 0.91931 1.06688 0.95717 1.19305 0.91417 0.94965 1.06353 1.20542 0.98066 0.94287 1.02173 0.86426 0.91668 0.91497 0.82281 0.82687 0.86495 0.87764 0.90047 0.88254 0.87122 0.84381 0.84437 0.86473 0.91205 0.93759 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.15 9.54 -92.53 -0.88 -9.03 16 3 C 0.12 3.40 6.65 22.47 0.15 3.55 16 4 C -0.20 -4.75 9.03 22.41 0.20 -4.55 16 5 C -0.08 -1.98 10.03 22.22 0.22 -1.76 16 6 C -0.16 -5.19 9.73 22.52 0.22 -4.97 16 7 C -0.01 -0.30 4.55 -20.07 -0.09 -0.39 16 8 C -0.03 -1.55 4.20 -18.90 -0.08 -1.63 16 9 C -0.15 -7.49 9.32 22.61 0.21 -7.27 16 10 C 0.08 4.35 5.55 -21.42 -0.12 4.23 16 11 C -0.49 -26.39 8.99 23.41 0.21 -26.18 16 12 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 13 C 0.04 1.81 5.09 85.25 0.43 2.25 16 14 N -0.81 -43.21 11.00 21.82 0.24 -42.97 16 15 Si 0.98 38.31 29.60 68.60 2.03 40.34 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 19 C -0.23 -12.87 8.39 23.09 0.19 -12.67 16 20 C -0.02 -1.03 5.74 -21.33 -0.12 -1.16 16 21 C -0.16 -6.98 9.78 22.43 0.22 -6.76 16 22 C -0.11 -3.78 9.95 22.03 0.22 -3.56 16 23 C -0.18 -6.29 9.96 22.12 0.22 -6.07 16 24 C -0.08 -3.03 7.62 22.25 0.17 -2.86 16 25 C -0.13 -5.97 5.35 -19.89 -0.11 -6.08 16 26 C -0.12 -4.09 4.98 -19.53 -0.10 -4.19 16 27 C -0.09 -3.21 8.31 71.24 0.59 -2.62 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 30 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 31 H 0.16 2.49 6.28 -2.91 -0.02 2.47 16 32 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 36 H 0.10 5.74 6.15 -2.91 -0.02 5.73 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 39 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.12 4.25 6.13 -2.91 -0.02 4.23 16 41 H 0.07 2.31 6.72 -2.39 -0.02 2.29 16 42 H 0.04 1.73 6.94 -2.39 -0.02 1.71 16 43 H 0.07 2.23 7.53 -2.39 -0.02 2.21 16 Total: -1.00 -64.42 352.24 6.17 -58.25 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 1.03 Total: 34.75 kcal Atomic # 6 Polarization: -85.10 SS G_CDS: 3.76 Total: -81.34 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.24 Total: -42.97 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.88 Total: -9.03 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -64.42 6.17 -58.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238993756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.797 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds