Wall clock time and date at job start Tue Mar 31 2020 12:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35835 * 117.00192 * 2 1 4 4 C 1.38563 * 120.12418 * 0.27201 * 3 2 1 5 5 C 1.38193 * 120.07098 * 180.30192 * 4 3 2 6 6 C 1.38419 * 120.32722 * 359.71701 * 5 4 3 7 7 C 1.50698 * 119.87289 * 179.97438 * 6 5 4 8 8 C 1.37969 * 120.25073 * 359.97438 * 6 5 4 9 9 C 1.39423 * 119.92101 * 0.02562 * 8 6 5 10 10 C 1.48098 * 120.16047 * 180.02562 * 9 8 6 11 11 C 1.36703 * 120.34417 * 65.01532 * 10 9 8 12 12 C 1.41115 * 120.58475 * 180.02562 * 11 10 9 13 13 C 1.41214 * 119.48487 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00674 * 333.76112 * 13 12 11 15 15 C 1.39919 * 119.99892 * 153.76858 * 13 12 11 16 16 N 1.30844 * 120.00023 * 342.13690 * 15 13 12 17 17 Si 1.86798 * 120.00377 * 162.14423 * 15 13 12 18 18 H 1.48495 * 109.47248 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47596 * 119.99821 * 17 15 13 20 20 H 1.48503 * 109.46946 * 239.99428 * 17 15 13 21 21 C 1.39973 * 121.02182 * 359.68521 * 12 11 10 22 22 C 1.39897 * 120.11615 * 0.59140 * 21 12 11 23 23 C 1.40852 * 121.13465 * 179.70950 * 22 21 12 24 24 C 1.36195 * 119.60426 * 179.70026 * 23 22 21 25 25 C 1.39243 * 120.94151 * 0.02562 * 24 23 22 26 26 C 1.36549 * 120.97851 * 0.02562 * 25 24 23 27 27 C 1.39795 * 119.73623 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47496 * 300.00820 * 1 2 3 29 29 H 1.09008 * 109.46599 * 60.00353 * 1 2 3 30 30 H 1.08992 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.96628 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.84082 * 179.69813 * 5 4 3 33 33 H 1.09003 * 109.47124 * 269.97845 * 7 6 5 34 34 H 1.09000 * 109.47525 * 29.98027 * 7 6 5 35 35 H 1.09002 * 109.47007 * 149.98465 * 7 6 5 36 36 H 1.07998 * 120.03811 * 180.02562 * 8 6 5 37 37 H 1.08000 * 119.71449 * 359.97438 * 11 10 9 38 38 H 0.96996 * 120.00473 * 179.97438 * 16 15 13 39 39 H 1.07996 * 119.93784 * 180.02562 * 21 12 11 40 40 H 1.07996 * 120.20108 * 359.71106 * 23 22 21 41 41 H 1.08003 * 119.53033 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.51254 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.13004 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2936 2.3740 0.0057 5 6 1.9221 3.6047 -0.0006 6 6 3.3041 3.6837 -0.0067 7 6 3.9788 5.0312 -0.0142 8 6 4.0660 2.5336 -0.0061 9 6 3.4428 1.2864 0.0003 10 6 4.2555 0.0484 0.0016 11 6 5.0548 -0.2519 1.0692 12 6 5.8317 -1.4298 1.0756 13 6 6.6488 -1.7175 2.1909 14 1 7.0179 -0.9144 2.8115 15 6 6.9805 -3.0431 2.4918 16 7 6.2798 -4.0243 1.9836 17 14 8.4233 -3.4121 3.6193 18 1 9.0474 -2.1380 4.0579 19 1 7.9440 -4.1635 4.8071 20 1 9.4261 -4.2283 2.8889 21 6 5.7996 -2.3211 -0.0032 22 6 4.9988 -2.0464 -1.1170 23 6 4.9549 -2.9252 -2.2169 24 6 4.1596 -2.6301 -3.2824 25 6 3.3885 -1.4708 -3.3010 26 6 3.4081 -0.5968 -2.2521 27 6 4.2122 -0.8655 -1.1405 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2151 2.3192 0.0097 32 1 1.3323 4.5094 -0.0011 33 1 4.1375 5.3524 -1.0436 34 1 3.3478 5.7565 0.4996 35 1 4.9393 4.9594 0.4961 36 1 5.1440 2.5992 -0.0104 37 1 5.0927 0.4187 1.9150 38 1 6.5099 -4.9433 2.1919 39 1 6.4011 -3.2177 0.0203 40 1 5.5482 -3.8276 -2.2153 41 1 4.1265 -3.3050 -4.1250 42 1 2.7663 -1.2594 -4.1581 43 1 2.8049 0.2985 -2.2811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239769671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:41 Heat of formation + Delta-G solvation = 13.621386 kcal Electronic energy + Delta-G solvation = -25848.541548 eV Core-core repulsion = 22401.802753 eV Total energy + Delta-G solvation = -3446.738795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.05086 -38.52910 -37.36208 -35.62838 -33.76680 -32.17049 -31.39313 -30.00000 -29.45104 -27.81647 -27.46670 -25.71958 -25.21647 -22.93147 -21.74318 -21.43132 -20.85228 -19.64173 -17.89545 -17.28086 -16.15972 -16.00198 -15.77825 -15.37937 -14.94042 -14.73946 -14.21035 -14.12399 -13.61325 -13.57004 -13.37757 -13.16157 -12.70251 -12.42922 -12.29979 -12.14308 -11.99186 -11.84955 -11.72534 -11.50161 -11.33078 -11.19675 -10.87616 -10.76202 -10.68089 -10.58212 -10.38687 -9.96775 -9.58604 -9.49460 -9.08675 -8.69145 -8.43529 -7.70964 -7.41125 -6.81989 -6.60762 -4.33947 1.45503 1.65743 1.90065 2.37922 2.97680 3.05418 3.10118 3.33513 3.59678 3.88400 3.97368 4.10083 4.86256 4.92781 5.04619 5.10035 5.19949 5.28824 5.40475 5.54055 5.61551 5.68247 5.70465 5.72003 5.81711 5.84487 5.88362 5.99768 6.02920 6.25537 6.29547 6.47728 6.51192 6.60342 6.69805 6.76052 6.84067 6.98176 7.02450 7.06584 7.14006 7.34915 7.47357 7.52828 7.59970 7.73296 7.80747 7.96361 8.14298 8.22620 8.57579 8.79188 8.86311 10.12363 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.004720 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.589997 B = 5930.646817 C = 7167.466030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.294 6.294 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.072 4.072 9 C -0.045 4.045 10 C -0.041 4.041 11 C -0.127 4.127 12 C 0.101 3.899 13 C -0.451 4.451 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.780 5.780 17 Si 0.907 3.093 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.271 1.271 21 C -0.204 4.204 22 C 0.001 3.999 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.194 4.194 26 C -0.065 4.065 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.281 0.719 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 9.726 -3.368 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.207 6.207 3 C 0.087 3.913 4 C -0.230 4.230 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.162 4.162 8 C -0.090 4.090 9 C -0.046 4.046 10 C -0.041 4.041 11 C -0.145 4.145 12 C 0.099 3.901 13 C -0.479 4.479 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.404 5.404 17 Si 0.731 3.269 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.196 1.196 21 C -0.224 4.224 22 C 0.000 4.000 23 C -0.158 4.158 24 C -0.137 4.137 25 C -0.213 4.213 26 C -0.083 4.083 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.142 9.269 -3.333 12.166 hybrid contribution 0.144 -0.257 0.558 0.631 sum -6.998 9.012 -2.775 11.742 Atomic orbital electron populations 1.23010 0.79509 1.03703 1.00569 1.86295 1.20162 1.26200 1.87996 1.19121 0.91645 0.84258 0.96261 1.21081 0.99574 0.92303 1.09996 1.20705 0.93838 0.96604 0.99846 1.19677 0.93524 0.95261 1.04406 1.20679 1.00296 0.93412 1.01844 1.21015 0.99811 0.90035 0.98173 1.18273 0.89502 0.93743 1.03078 1.18957 0.97799 0.92472 0.94888 1.21108 0.97855 0.99098 0.96457 1.17375 0.90020 0.90247 0.92498 1.19646 1.25964 0.92708 1.09626 0.90245 1.25902 0.96354 0.96073 0.96172 1.69859 1.33288 1.00779 1.36462 0.86284 0.81322 0.79504 0.79815 1.18333 1.19958 1.19606 1.21144 1.05208 1.03634 0.92449 1.17922 0.95360 0.92437 0.94253 1.20875 1.01146 0.99355 0.94407 1.20451 0.98204 0.97151 0.97897 1.20296 1.04424 0.97282 0.99277 1.20542 0.96875 0.97758 0.93163 1.18425 1.02009 0.95821 0.94504 0.93137 0.93144 0.88491 0.85839 0.86412 0.91722 0.92076 0.91698 0.85326 0.88156 0.90760 0.86196 0.87454 0.88314 0.88523 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.34 9.11 -19.22 -0.18 -5.52 16 3 C 0.13 2.33 5.56 -38.84 -0.22 2.12 16 4 C -0.21 -3.01 9.03 -39.48 -0.36 -3.37 16 5 C -0.09 -1.21 9.68 -39.53 -0.38 -1.59 16 6 C -0.13 -1.78 5.88 -104.66 -0.61 -2.40 16 7 C -0.11 -1.12 10.00 36.00 0.36 -0.75 16 8 C -0.07 -1.20 9.38 -39.24 -0.37 -1.56 16 9 C -0.05 -0.87 4.56 -104.78 -0.48 -1.35 16 10 C -0.04 -0.92 5.04 -103.15 -0.52 -1.44 16 11 C -0.13 -3.03 9.32 -39.05 -0.36 -3.39 16 12 C 0.10 2.64 5.55 -107.03 -0.59 2.05 16 13 C -0.45 -11.61 8.99 -37.82 -0.34 -11.95 16 14 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 15 C 0.07 1.82 5.09 -17.34 -0.09 1.73 16 16 N -0.78 -19.97 11.00 55.55 0.61 -19.36 16 17 Si 0.91 18.27 29.60 -169.99 -5.03 13.24 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 21 C -0.20 -5.36 8.38 -38.31 -0.32 -5.68 16 22 C 0.00 0.01 5.74 -106.88 -0.61 -0.60 16 23 C -0.14 -3.08 9.78 -39.33 -0.38 -3.46 16 24 C -0.12 -2.35 9.95 -39.94 -0.40 -2.75 16 25 C -0.19 -3.81 9.96 -39.82 -0.40 -4.21 16 26 C -0.07 -1.37 8.65 -39.61 -0.34 -1.72 16 27 C -0.11 -2.50 5.73 -104.65 -0.60 -3.10 16 28 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 29 H 0.05 0.54 7.68 -51.92 -0.40 0.14 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 39 H 0.12 3.26 6.17 -52.49 -0.32 2.94 16 40 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.10 1.94 6.48 -52.49 -0.34 1.60 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -28.99 358.38 -10.78 -39.77 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.56 Total: 8.55 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: -6.03 Total: -42.09 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.36 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.18 Total: -5.52 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.99 -10.78 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239769671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.396 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds