Wall clock time and date at job start Tue Mar 31 2020 12:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35835 * 117.00192 * 2 1 4 4 C 1.38563 * 120.12418 * 0.27201 * 3 2 1 5 5 C 1.38193 * 120.07098 * 180.30192 * 4 3 2 6 6 C 1.38419 * 120.32722 * 359.71701 * 5 4 3 7 7 C 1.50698 * 119.87289 * 179.97438 * 6 5 4 8 8 C 1.37969 * 120.25073 * 359.97438 * 6 5 4 9 9 C 1.39423 * 119.92101 * 0.02562 * 8 6 5 10 10 C 1.48098 * 120.16047 * 180.02562 * 9 8 6 11 11 C 1.36703 * 120.34417 * 65.01532 * 10 9 8 12 12 C 1.41115 * 120.58475 * 180.02562 * 11 10 9 13 13 C 1.41214 * 119.48487 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00674 * 333.76112 * 13 12 11 15 15 C 1.39919 * 119.99892 * 153.76858 * 13 12 11 16 16 N 1.30844 * 120.00023 * 342.13690 * 15 13 12 17 17 Si 1.86798 * 120.00377 * 162.14423 * 15 13 12 18 18 H 1.48495 * 109.47248 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47596 * 119.99821 * 17 15 13 20 20 H 1.48503 * 109.46946 * 239.99428 * 17 15 13 21 21 C 1.39973 * 121.02182 * 359.68521 * 12 11 10 22 22 C 1.39897 * 120.11615 * 0.59140 * 21 12 11 23 23 C 1.40852 * 121.13465 * 179.70950 * 22 21 12 24 24 C 1.36195 * 119.60426 * 179.70026 * 23 22 21 25 25 C 1.39243 * 120.94151 * 0.02562 * 24 23 22 26 26 C 1.36549 * 120.97851 * 0.02562 * 25 24 23 27 27 C 1.39795 * 119.73623 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47496 * 300.00820 * 1 2 3 29 29 H 1.09008 * 109.46599 * 60.00353 * 1 2 3 30 30 H 1.08992 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.96628 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.84082 * 179.69813 * 5 4 3 33 33 H 1.09003 * 109.47124 * 269.97845 * 7 6 5 34 34 H 1.09000 * 109.47525 * 29.98027 * 7 6 5 35 35 H 1.09002 * 109.47007 * 149.98465 * 7 6 5 36 36 H 1.07998 * 120.03811 * 180.02562 * 8 6 5 37 37 H 1.08000 * 119.71449 * 359.97438 * 11 10 9 38 38 H 0.96996 * 120.00473 * 179.97438 * 16 15 13 39 39 H 1.07996 * 119.93784 * 180.02562 * 21 12 11 40 40 H 1.07996 * 120.20108 * 359.71106 * 23 22 21 41 41 H 1.08003 * 119.53033 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.51254 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.13004 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2936 2.3740 0.0057 5 6 1.9221 3.6047 -0.0006 6 6 3.3041 3.6837 -0.0067 7 6 3.9788 5.0312 -0.0142 8 6 4.0660 2.5336 -0.0061 9 6 3.4428 1.2864 0.0003 10 6 4.2555 0.0484 0.0016 11 6 5.0548 -0.2519 1.0692 12 6 5.8317 -1.4298 1.0756 13 6 6.6488 -1.7175 2.1909 14 1 7.0179 -0.9144 2.8115 15 6 6.9805 -3.0431 2.4918 16 7 6.2798 -4.0243 1.9836 17 14 8.4233 -3.4121 3.6193 18 1 9.0474 -2.1380 4.0579 19 1 7.9440 -4.1635 4.8071 20 1 9.4261 -4.2283 2.8889 21 6 5.7996 -2.3211 -0.0032 22 6 4.9988 -2.0464 -1.1170 23 6 4.9549 -2.9252 -2.2169 24 6 4.1596 -2.6301 -3.2824 25 6 3.3885 -1.4708 -3.3010 26 6 3.4081 -0.5968 -2.2521 27 6 4.2122 -0.8655 -1.1405 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2151 2.3192 0.0097 32 1 1.3323 4.5094 -0.0011 33 1 4.1375 5.3524 -1.0436 34 1 3.3478 5.7565 0.4996 35 1 4.9393 4.9594 0.4961 36 1 5.1440 2.5992 -0.0104 37 1 5.0927 0.4187 1.9150 38 1 6.5099 -4.9433 2.1919 39 1 6.4011 -3.2177 0.0203 40 1 5.5482 -3.8276 -2.2153 41 1 4.1265 -3.3050 -4.1250 42 1 2.7663 -1.2594 -4.1581 43 1 2.8049 0.2985 -2.2811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239769671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:40 Heat of formation + Delta-G solvation = 1.305234 kcal Electronic energy + Delta-G solvation = -25849.075616 eV Core-core repulsion = 22401.802753 eV Total energy + Delta-G solvation = -3447.272863 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34374 -40.17197 -38.53883 -37.39226 -35.44624 -33.75239 -32.53979 -31.55003 -31.19489 -29.35085 -28.60104 -27.10179 -26.68873 -24.43044 -23.34137 -23.06452 -22.22345 -21.20043 -19.38988 -18.72277 -17.79815 -17.66204 -17.09044 -16.72696 -16.47358 -16.22406 -15.74954 -15.23093 -14.93882 -14.86172 -14.68568 -14.42571 -14.21397 -14.19076 -13.97110 -13.68404 -13.28190 -13.02289 -12.99051 -12.81870 -12.78743 -12.59456 -12.50331 -12.38360 -12.07898 -11.86202 -11.73919 -11.63803 -11.33677 -11.20213 -10.90013 -10.34580 -9.77979 -9.22834 -8.92779 -8.66227 -8.36714 -6.29973 -0.03378 0.41800 0.50648 0.61587 1.34141 1.37787 1.51821 1.58428 2.17622 2.31106 2.49203 2.79071 3.04829 3.71387 3.78321 3.97776 4.05001 4.12442 4.22315 4.29468 4.34242 4.40536 4.44472 4.47652 4.59243 4.64492 4.71734 4.76972 4.80676 4.92034 4.92444 4.97596 5.08122 5.18197 5.19510 5.24610 5.31298 5.37299 5.47364 5.59735 5.67514 5.72339 5.77660 5.87656 5.94394 6.02329 6.08924 6.26308 6.45973 6.59348 6.67438 6.88174 6.96896 8.30794 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.004720 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.589997 B = 5930.646817 C = 7167.466030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.204 4.204 5 C -0.080 4.080 6 C -0.126 4.126 7 C -0.104 4.104 8 C -0.085 4.085 9 C -0.086 4.086 10 C -0.023 4.023 11 C -0.158 4.158 12 C 0.078 3.922 13 C -0.488 4.488 14 H 0.079 0.921 15 C 0.033 3.967 16 N -0.818 5.818 17 Si 0.983 3.017 18 H -0.255 1.255 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.235 4.235 22 C -0.023 4.023 23 C -0.164 4.164 24 C -0.105 4.105 25 C -0.184 4.184 26 C -0.068 4.068 27 C -0.128 4.128 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.288 0.712 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 12.028 -4.775 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.073 3.927 4 C -0.222 4.222 5 C -0.098 4.098 6 C -0.126 4.126 7 C -0.161 4.161 8 C -0.103 4.103 9 C -0.087 4.087 10 C -0.024 4.024 11 C -0.177 4.177 12 C 0.076 3.924 13 C -0.517 4.517 14 H 0.097 0.903 15 C -0.182 4.182 16 N -0.443 5.443 17 Si 0.803 3.197 18 H -0.179 1.179 19 H -0.189 1.189 20 H -0.189 1.189 21 C -0.256 4.256 22 C -0.024 4.024 23 C -0.182 4.182 24 C -0.123 4.123 25 C -0.202 4.202 26 C -0.086 4.086 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.343 11.583 -4.754 15.623 hybrid contribution 0.604 -0.853 0.798 1.315 sum -8.739 10.731 -3.956 14.393 Atomic orbital electron populations 1.23296 0.77004 1.04842 1.02403 1.86230 1.22990 1.27196 1.88320 1.19228 0.91120 0.85275 0.97051 1.21432 1.00991 0.91396 1.08414 1.21216 0.93697 0.97709 0.97177 1.20051 0.94162 0.95636 1.02751 1.20749 1.00464 0.91863 1.03013 1.21074 0.99867 0.90399 0.98937 1.18274 0.90457 0.92931 1.06991 1.19325 0.96208 0.93314 0.93507 1.21157 0.99637 0.99185 0.97725 1.17712 0.90638 0.91216 0.92820 1.19894 1.27700 0.93696 1.10384 0.90279 1.26793 0.98597 0.95291 0.97556 1.69937 1.34930 1.01347 1.38054 0.85152 0.77454 0.79353 0.77724 1.17868 1.18937 1.18933 1.21024 1.06996 1.03578 0.93969 1.18242 0.95639 0.93793 0.94679 1.21044 1.02721 0.99561 0.94869 1.20889 0.96092 0.97494 0.97805 1.20800 1.03574 0.96154 0.99695 1.20712 0.96456 0.98685 0.92714 1.18798 1.02471 0.95757 0.95882 0.91467 0.90944 0.87924 0.82735 0.82329 0.90431 0.89669 0.91834 0.86129 0.88043 0.90143 0.88353 0.87166 0.84310 0.84458 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -11.98 9.11 -91.70 -0.84 -12.81 16 3 C 0.12 4.06 5.56 22.75 0.13 4.19 16 4 C -0.20 -5.15 9.03 22.34 0.20 -4.95 16 5 C -0.08 -1.78 9.68 22.30 0.22 -1.56 16 6 C -0.13 -3.18 5.88 -19.89 -0.12 -3.30 16 7 C -0.10 -1.87 10.00 71.24 0.71 -1.15 16 8 C -0.08 -2.81 9.38 22.49 0.21 -2.60 16 9 C -0.09 -3.35 4.56 -19.97 -0.09 -3.44 16 10 C -0.02 -1.11 5.04 -18.91 -0.10 -1.21 16 11 C -0.16 -8.23 9.32 22.62 0.21 -8.02 16 12 C 0.08 4.47 5.55 -21.42 -0.12 4.35 16 13 C -0.49 -27.16 8.99 23.41 0.21 -26.95 16 14 H 0.08 4.20 7.91 -2.91 -0.02 4.17 16 15 C 0.03 1.72 5.09 85.25 0.43 2.16 16 16 N -0.82 -44.72 11.00 21.82 0.24 -44.48 16 17 Si 0.98 39.19 29.60 68.60 2.03 41.22 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C -0.24 -13.46 8.38 23.09 0.19 -13.26 16 22 C -0.02 -1.22 5.74 -21.33 -0.12 -1.34 16 23 C -0.16 -7.40 9.78 22.43 0.22 -7.18 16 24 C -0.11 -3.95 9.95 22.04 0.22 -3.73 16 25 C -0.18 -6.72 9.96 22.12 0.22 -6.50 16 26 C -0.07 -2.80 8.65 22.25 0.19 -2.60 16 27 C -0.13 -6.24 5.73 -19.88 -0.11 -6.35 16 28 H 0.07 1.30 7.65 -2.39 -0.02 1.28 16 29 H 0.07 1.32 7.68 -2.38 -0.02 1.31 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.16 2.87 6.30 -2.91 -0.02 2.85 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.11 4.27 6.48 -2.91 -0.02 4.25 16 Total: -1.00 -69.52 358.38 6.28 -63.25 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 1.02 Total: 34.72 kcal Atomic # 6 Polarization: -85.72 SS G_CDS: 3.82 Total: -81.89 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.24 Total: -44.48 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.84 Total: -12.81 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -69.52 6.28 -63.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239769671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.551 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds