Wall clock time and date at job start Tue Mar 31 2020 12:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35848 * 116.99526 * 2 1 4 4 C 1.39862 * 119.63725 * 0.20797 * 3 2 1 5 5 C 1.35949 * 120.89758 * 180.23637 * 4 3 2 6 6 C 1.40734 * 119.87796 * 359.79502 * 5 4 3 7 7 C 1.40240 * 120.98703 * 179.97438 * 6 5 4 8 8 C 1.38624 * 119.47127 * 180.02562 * 7 6 5 9 9 C 1.47854 * 119.74243 * 180.02562 * 8 7 6 10 10 C 1.40033 * 119.89163 * 309.73111 * 9 8 7 11 11 C 1.36189 * 120.11994 * 179.75697 * 10 9 8 12 12 C 1.40975 * 119.87863 * 0.53267 * 11 10 9 13 13 C 1.40979 * 120.11278 * 179.69209 * 12 11 10 14 14 H 1.07998 * 120.00192 * 155.02375 * 13 12 11 15 15 C 1.39978 * 119.99940 * 335.03344 * 13 12 11 16 16 N 1.30812 * 120.00274 * 342.11322 * 15 13 12 17 17 Si 1.86803 * 120.00187 * 162.11919 * 15 13 12 18 18 H 1.48496 * 109.47560 * 94.64707 * 17 15 13 19 19 H 1.48503 * 109.46889 * 214.65017 * 17 15 13 20 20 H 1.48499 * 109.46773 * 334.64479 * 17 15 13 21 21 C 1.40947 * 119.77944 * 359.72360 * 12 11 10 22 22 C 1.36219 * 119.87794 * 359.97438 * 21 12 11 23 23 C 1.50710 * 119.93904 * 180.02562 * 22 21 12 24 24 C 1.40659 * 120.51383 * 0.02562 * 8 7 6 25 25 C 1.35672 * 120.82379 * 0.02562 * 24 8 7 26 26 C 1.40814 * 120.03390 * 359.95683 * 25 24 8 27 27 C 1.37704 * 119.63238 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47202 * 299.99763 * 1 2 3 30 30 H 1.09004 * 109.47339 * 60.00429 * 1 2 3 31 31 H 1.08003 * 119.55504 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.05661 * 179.81578 * 5 4 3 33 33 H 1.07999 * 120.26060 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.93921 * 0.02562 * 10 9 8 35 35 H 1.07996 * 120.06364 * 180.23449 * 11 10 9 36 36 H 0.96999 * 120.00764 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.06133 * 180.02562 * 21 12 11 38 38 H 1.08997 * 109.46785 * 270.01887 * 23 22 21 39 39 H 1.08997 * 109.47168 * 30.01961 * 23 22 21 40 40 H 1.08999 * 109.47139 * 150.02124 * 23 22 21 41 41 H 1.08003 * 119.58916 * 179.97438 * 24 8 7 42 42 H 1.08005 * 119.98084 * 180.02562 * 25 24 8 43 43 H 1.08006 * 120.20455 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2764 2.3785 0.0044 5 6 1.8667 3.6032 -0.0003 6 6 3.2703 3.7049 -0.0054 7 6 3.9036 4.9561 -0.0108 8 6 5.2884 5.0197 -0.0163 9 6 5.9622 6.3357 -0.0214 10 6 5.5860 7.3087 -0.9556 11 6 6.2002 8.5243 -0.9613 12 6 7.2241 8.7981 -0.0319 13 6 7.8677 10.0524 -0.0377 14 1 8.3334 10.4246 0.8629 15 6 7.9028 10.8156 -1.2105 16 7 7.6652 10.2504 -2.3661 17 14 8.2892 12.6413 -1.1258 18 1 9.7407 12.8515 -1.3582 19 1 7.5119 13.3606 -2.1668 20 1 7.9219 13.1632 0.2151 21 6 7.6028 7.8135 0.9028 22 6 6.9779 6.6031 0.9041 23 6 7.3814 5.5494 1.9033 24 6 6.0574 3.8419 -0.0169 25 6 5.4619 2.6229 -0.0127 26 6 4.0572 2.5247 -0.0068 27 6 3.4212 1.2738 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.1988 2.3067 0.0082 32 1 1.2595 4.4963 0.0002 33 1 3.3170 5.8630 -0.0108 34 1 4.8043 7.0964 -1.6700 35 1 5.9067 9.2753 -1.6797 36 1 7.6899 10.7792 -3.1789 37 1 8.3864 8.0185 1.6171 38 1 8.1767 4.9347 1.4819 39 1 7.7377 6.0301 2.8144 40 1 6.5215 4.9214 2.1363 41 1 7.1353 3.9088 -0.0216 42 1 6.0656 1.7273 -0.0129 43 1 4.0070 0.3664 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239841146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:14 Heat of formation + Delta-G solvation = 9.440029 kcal Electronic energy + Delta-G solvation = -24627.688981 eV Core-core repulsion = 21180.768869 eV Total energy + Delta-G solvation = -3446.920112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.40275 -38.94281 -37.75075 -35.40836 -33.90040 -32.50360 -31.43675 -30.55224 -29.48279 -28.62049 -27.04818 -25.89895 -25.01161 -23.18178 -22.10817 -21.77035 -20.38449 -19.96827 -18.17412 -17.07495 -16.88212 -16.54957 -15.82213 -15.43546 -15.21029 -14.74749 -14.37904 -13.98883 -13.87018 -13.65809 -13.23240 -13.11376 -13.03478 -12.64081 -12.51214 -12.45382 -12.03903 -11.87563 -11.77764 -11.58240 -11.44622 -11.32812 -11.05183 -10.87652 -10.64148 -10.48186 -10.47466 -10.27103 -9.70152 -9.54631 -9.36409 -9.18906 -8.18211 -7.66724 -7.44451 -7.01016 -6.85849 -4.42852 0.75655 1.25543 2.28913 2.64589 2.99851 3.00440 3.04331 3.07581 3.22630 3.36769 3.83573 4.36985 4.54752 4.68682 4.86257 4.91787 4.95583 5.14814 5.25128 5.31561 5.43156 5.48411 5.54719 5.65649 5.74174 5.90080 5.97019 6.00913 6.07031 6.27925 6.29003 6.32897 6.35852 6.46845 6.53700 6.56585 6.78958 6.89043 6.91616 6.93666 7.04680 7.23100 7.28211 7.32315 7.41270 7.56493 7.86172 7.97354 8.06619 8.18964 8.53294 8.76882 8.88288 10.03946 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.002526 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.422409 B =11081.625872 C =11651.638325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.106 3.894 4 C -0.196 4.196 5 C -0.069 4.069 6 C -0.068 4.068 7 C -0.120 4.120 8 C 0.014 3.986 9 C -0.205 4.205 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.120 3.880 13 C -0.452 4.452 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.782 5.782 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.227 4.227 22 C -0.037 4.037 23 C -0.109 4.109 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.030 4.030 27 C -0.146 4.146 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.283 0.717 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 -12.803 2.809 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.062 3.938 4 C -0.214 4.214 5 C -0.087 4.087 6 C -0.068 4.068 7 C -0.138 4.138 8 C 0.014 3.986 9 C -0.206 4.206 10 C -0.092 4.092 11 C -0.193 4.193 12 C 0.117 3.883 13 C -0.481 4.481 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.407 5.407 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.246 4.246 22 C -0.037 4.037 23 C -0.165 4.165 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.030 4.030 27 C -0.165 4.165 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.784 -12.936 2.548 16.418 hybrid contribution -0.062 1.001 -0.202 1.023 sum -9.845 -11.936 2.346 15.649 Atomic orbital electron populations 1.22995 0.78911 1.03539 1.01197 1.86037 1.20975 1.27266 1.89308 1.18856 0.92109 0.83794 0.99046 1.20889 0.99698 0.92464 1.08350 1.20897 0.93677 0.97105 0.97003 1.18008 0.92898 0.93281 1.02612 1.21378 0.94230 0.95630 1.02552 1.18914 0.92121 0.93140 0.94392 1.17908 1.04932 0.93571 1.04172 1.20443 0.98408 0.93665 0.96684 1.20963 0.98535 0.96688 1.03072 1.17681 0.89202 0.91690 0.89724 1.19622 1.30481 1.01246 0.96728 0.90190 1.25990 0.92811 1.00864 0.94775 1.69824 1.34201 1.37741 0.98885 0.86290 0.79183 0.81765 0.79512 1.19436 1.19902 1.18282 1.20533 1.04273 0.94065 1.05767 1.19092 0.94697 0.94656 0.95221 1.20823 1.00458 0.97691 0.97567 1.21177 1.00261 0.91685 0.97800 1.20789 0.92797 0.97812 1.02948 1.17713 0.93447 0.91605 1.00284 1.20332 0.91197 0.97362 1.07561 0.88570 0.92852 0.92839 0.85833 0.85490 0.85859 0.89323 0.86503 0.90602 0.88842 0.92540 0.92908 0.92495 0.85908 0.86100 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.80 101.05 0.99 1.21 16 2 O -0.32 -3.85 10.48 -19.26 -0.20 -4.05 16 3 C 0.11 1.41 6.67 -39.17 -0.26 1.15 16 4 C -0.20 -2.39 8.94 -39.80 -0.36 -2.74 16 5 C -0.07 -0.92 9.75 -39.46 -0.38 -1.31 16 6 C -0.07 -1.07 5.74 -106.82 -0.61 -1.69 16 7 C -0.12 -2.07 9.22 -38.69 -0.36 -2.43 16 8 C 0.01 0.27 4.71 -104.91 -0.49 -0.22 16 9 C -0.20 -4.42 5.48 -104.63 -0.57 -5.00 16 10 C -0.07 -1.69 9.41 -39.65 -0.37 -2.06 16 11 C -0.17 -4.38 8.63 -39.28 -0.34 -4.72 16 12 C 0.12 3.10 5.57 -106.80 -0.59 2.50 16 13 C -0.45 -11.59 9.03 -37.89 -0.34 -11.93 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 15 C 0.07 1.82 5.13 -17.33 -0.09 1.73 16 16 N -0.78 -19.58 10.97 55.55 0.61 -18.97 16 17 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.23 -5.41 9.36 -39.28 -0.37 -5.77 16 22 C -0.04 -0.79 5.83 -104.69 -0.61 -1.40 16 23 C -0.11 -1.91 8.42 36.01 0.30 -1.61 16 24 C -0.09 -1.53 7.77 -39.59 -0.31 -1.83 16 25 C -0.13 -1.88 9.73 -39.53 -0.38 -2.26 16 26 C -0.03 -0.47 5.75 -106.76 -0.61 -1.08 16 27 C -0.15 -2.04 9.72 -38.99 -0.38 -2.42 16 28 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.36 7.63 -51.93 -0.40 -0.04 16 30 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 31 H 0.12 1.16 6.23 -52.48 -0.33 0.83 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.12 2.05 8.02 -52.49 -0.42 1.63 16 34 H 0.09 1.88 8.02 -52.49 -0.42 1.46 16 35 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 36 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 39 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.06 0.96 6.44 -51.93 -0.33 0.63 16 41 H 0.12 1.97 6.78 -52.48 -0.36 1.62 16 42 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -27.81 356.04 -10.85 -38.66 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.45 Total: 7.94 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: -6.15 Total: -41.89 kcal Atomic # 7 Polarization: -19.58 SS G_CDS: 0.61 Total: -18.97 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.05 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.81 -10.85 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239841146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.101 kcal (2) G-P(sol) polarization free energy of solvation -27.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds