Wall clock time and date at job start Tue Mar 31 2020 12:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35848 * 116.99526 * 2 1 4 4 C 1.39862 * 119.63725 * 0.20797 * 3 2 1 5 5 C 1.35949 * 120.89758 * 180.23637 * 4 3 2 6 6 C 1.40734 * 119.87796 * 359.79502 * 5 4 3 7 7 C 1.40240 * 120.98703 * 179.97438 * 6 5 4 8 8 C 1.38624 * 119.47127 * 180.02562 * 7 6 5 9 9 C 1.47854 * 119.74243 * 180.02562 * 8 7 6 10 10 C 1.40033 * 119.89163 * 309.73111 * 9 8 7 11 11 C 1.36189 * 120.11994 * 179.75697 * 10 9 8 12 12 C 1.40975 * 119.87863 * 0.53267 * 11 10 9 13 13 C 1.40979 * 120.11278 * 179.69209 * 12 11 10 14 14 H 1.07998 * 120.00192 * 155.02375 * 13 12 11 15 15 C 1.39978 * 119.99940 * 335.03344 * 13 12 11 16 16 N 1.30812 * 120.00274 * 342.11322 * 15 13 12 17 17 Si 1.86803 * 120.00187 * 162.11919 * 15 13 12 18 18 H 1.48496 * 109.47560 * 94.64707 * 17 15 13 19 19 H 1.48503 * 109.46889 * 214.65017 * 17 15 13 20 20 H 1.48499 * 109.46773 * 334.64479 * 17 15 13 21 21 C 1.40947 * 119.77944 * 359.72360 * 12 11 10 22 22 C 1.36219 * 119.87794 * 359.97438 * 21 12 11 23 23 C 1.50710 * 119.93904 * 180.02562 * 22 21 12 24 24 C 1.40659 * 120.51383 * 0.02562 * 8 7 6 25 25 C 1.35672 * 120.82379 * 0.02562 * 24 8 7 26 26 C 1.40814 * 120.03390 * 359.95683 * 25 24 8 27 27 C 1.37704 * 119.63238 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.47062 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47202 * 299.99763 * 1 2 3 30 30 H 1.09004 * 109.47339 * 60.00429 * 1 2 3 31 31 H 1.08003 * 119.55504 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.05661 * 179.81578 * 5 4 3 33 33 H 1.07999 * 120.26060 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.93921 * 0.02562 * 10 9 8 35 35 H 1.07996 * 120.06364 * 180.23449 * 11 10 9 36 36 H 0.96999 * 120.00764 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.06133 * 180.02562 * 21 12 11 38 38 H 1.08997 * 109.46785 * 270.01887 * 23 22 21 39 39 H 1.08997 * 109.47168 * 30.01961 * 23 22 21 40 40 H 1.08999 * 109.47139 * 150.02124 * 23 22 21 41 41 H 1.08003 * 119.58916 * 179.97438 * 24 8 7 42 42 H 1.08005 * 119.98084 * 180.02562 * 25 24 8 43 43 H 1.08006 * 120.20455 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 6 1.2764 2.3785 0.0044 5 6 1.8667 3.6032 -0.0003 6 6 3.2703 3.7049 -0.0054 7 6 3.9036 4.9561 -0.0108 8 6 5.2884 5.0197 -0.0163 9 6 5.9622 6.3357 -0.0214 10 6 5.5860 7.3087 -0.9556 11 6 6.2002 8.5243 -0.9613 12 6 7.2241 8.7981 -0.0319 13 6 7.8677 10.0524 -0.0377 14 1 8.3334 10.4246 0.8629 15 6 7.9028 10.8156 -1.2105 16 7 7.6652 10.2504 -2.3661 17 14 8.2892 12.6413 -1.1258 18 1 9.7407 12.8515 -1.3582 19 1 7.5119 13.3606 -2.1668 20 1 7.9219 13.1632 0.2151 21 6 7.6028 7.8135 0.9028 22 6 6.9779 6.6031 0.9041 23 6 7.3814 5.5494 1.9033 24 6 6.0574 3.8419 -0.0169 25 6 5.4619 2.6229 -0.0127 26 6 4.0572 2.5247 -0.0068 27 6 3.4212 1.2738 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.1988 2.3067 0.0082 32 1 1.2595 4.4963 0.0002 33 1 3.3170 5.8630 -0.0108 34 1 4.8043 7.0964 -1.6700 35 1 5.9067 9.2753 -1.6797 36 1 7.6899 10.7792 -3.1789 37 1 8.3864 8.0185 1.6171 38 1 8.1767 4.9347 1.4819 39 1 7.7377 6.0301 2.8144 40 1 6.5215 4.9214 2.1363 41 1 7.1353 3.9088 -0.0216 42 1 6.0656 1.7273 -0.0129 43 1 4.0070 0.3664 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239841146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:13 Heat of formation + Delta-G solvation = -1.379628 kcal Electronic energy + Delta-G solvation = -24628.158157 eV Core-core repulsion = 21180.768869 eV Total energy + Delta-G solvation = -3447.389288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49218 -40.19552 -39.21999 -36.72954 -35.51437 -33.71906 -33.11287 -32.07071 -30.63907 -29.93183 -27.98977 -27.56499 -26.51963 -24.40401 -23.40208 -22.96395 -22.02982 -21.64146 -19.17953 -18.84900 -18.10676 -17.70471 -17.10776 -16.60737 -16.40130 -16.04700 -15.70337 -15.51450 -15.25262 -15.05769 -14.47694 -14.31672 -14.24160 -14.17462 -13.76283 -13.70542 -13.46946 -13.28590 -13.26018 -12.92374 -12.71718 -12.59812 -12.49348 -12.31548 -12.19981 -11.95667 -11.60230 -11.51028 -11.33680 -11.25622 -10.99244 -10.62959 -9.47539 -9.26548 -9.08626 -8.69839 -8.35584 -6.32746 -0.38102 0.06002 0.88987 1.16093 1.21747 1.37209 1.47861 1.53560 2.10079 2.18662 2.40983 2.69882 3.22299 3.66717 3.73723 3.91087 4.00639 4.05567 4.30636 4.33442 4.35442 4.40243 4.43470 4.44245 4.45553 4.53766 4.70095 4.73312 4.83680 4.90933 4.95344 5.01046 5.09058 5.13000 5.14015 5.27847 5.29720 5.32211 5.37451 5.48089 5.60271 5.72292 5.79299 5.82030 5.95693 6.11745 6.18271 6.26165 6.36617 6.47217 6.67289 6.89888 7.02772 8.27830 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028936 B = 0.002526 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.422409 B =11081.625872 C =11651.638325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.112 3.888 4 C -0.188 4.188 5 C -0.075 4.075 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.016 4.016 9 C -0.192 4.192 10 C -0.083 4.083 11 C -0.196 4.196 12 C 0.087 3.913 13 C -0.492 4.492 14 H 0.078 0.922 15 C 0.035 3.965 16 N -0.819 5.819 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.244 4.244 22 C -0.044 4.044 23 C -0.100 4.100 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.038 4.038 27 C -0.162 4.162 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.290 0.710 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 -15.267 3.388 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.067 3.933 4 C -0.206 4.206 5 C -0.092 4.092 6 C -0.087 4.087 7 C -0.135 4.135 8 C -0.016 4.016 9 C -0.193 4.193 10 C -0.101 4.101 11 C -0.216 4.216 12 C 0.085 3.915 13 C -0.521 4.521 14 H 0.096 0.904 15 C -0.181 4.181 16 N -0.444 5.444 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.182 1.182 21 C -0.263 4.263 22 C -0.044 4.044 23 C -0.157 4.157 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.038 4.038 27 C -0.180 4.180 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.596 -15.427 3.133 19.552 hybrid contribution 0.196 1.362 -0.357 1.422 sum -11.400 -14.065 2.775 18.316 Atomic orbital electron populations 1.23358 0.76519 1.05610 1.02269 1.86039 1.23440 1.26545 1.88785 1.19065 0.92223 0.84725 0.97266 1.21234 1.01395 0.91520 1.06421 1.21143 0.92816 0.98586 0.96702 1.18185 0.94273 0.92733 1.03550 1.21428 0.93776 0.96506 1.01821 1.18804 0.92831 0.92280 0.97715 1.18265 1.03996 0.94514 1.02545 1.20648 0.98609 0.93470 0.97402 1.20904 0.99638 0.97456 1.03557 1.18023 0.89944 0.92738 0.90840 1.19828 1.32375 1.02383 0.97485 0.90431 1.26829 0.92183 1.05213 0.93907 1.69879 1.35386 1.39523 0.99603 0.85185 0.79244 0.75761 0.79500 1.18588 1.18965 1.18178 1.20729 1.05006 0.94764 1.05834 1.19541 0.94213 0.94868 0.95793 1.20800 1.01315 0.96733 0.96838 1.21131 1.00277 0.91635 0.99032 1.21069 0.93048 0.98103 1.01106 1.17955 0.93799 0.92140 0.99879 1.20498 0.92036 0.97269 1.08223 0.86263 0.91671 0.91751 0.82618 0.83592 0.86074 0.88214 0.88248 0.89957 0.88415 0.90753 0.91812 0.91630 0.85664 0.83210 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.80 113.37 1.11 1.29 16 2 O -0.33 -6.76 10.48 -91.84 -0.96 -7.72 16 3 C 0.11 2.60 6.67 22.54 0.15 2.75 16 4 C -0.19 -3.89 8.94 22.13 0.20 -3.69 16 5 C -0.07 -1.80 9.75 22.35 0.22 -1.58 16 6 C -0.09 -2.62 5.74 -21.29 -0.12 -2.74 16 7 C -0.12 -4.00 9.22 22.85 0.21 -3.79 16 8 C -0.02 -0.61 4.71 -20.05 -0.09 -0.70 16 9 C -0.19 -8.48 5.48 -19.87 -0.11 -8.59 16 10 C -0.08 -3.99 9.41 22.23 0.21 -3.78 16 11 C -0.20 -10.55 8.63 22.46 0.19 -10.35 16 12 C 0.09 4.77 5.57 -21.27 -0.12 4.65 16 13 C -0.49 -26.66 9.03 23.36 0.21 -26.45 16 14 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 15 C 0.03 1.74 5.13 85.27 0.44 2.18 16 16 N -0.82 -43.03 10.97 21.83 0.24 -42.79 16 17 Si 0.98 38.01 29.60 68.60 2.03 40.04 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 C -0.24 -12.12 9.36 22.46 0.21 -11.91 16 22 C -0.04 -1.94 5.83 -19.91 -0.12 -2.06 16 23 C -0.10 -3.44 8.42 71.24 0.60 -2.84 16 24 C -0.10 -3.32 7.77 22.27 0.17 -3.15 16 25 C -0.12 -3.21 9.73 22.31 0.22 -2.99 16 26 C -0.04 -1.08 5.75 -21.25 -0.12 -1.20 16 27 C -0.16 -4.06 9.72 22.65 0.22 -3.84 16 28 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.59 7.63 -2.39 -0.02 0.57 16 30 H 0.06 0.60 7.65 -2.38 -0.02 0.58 16 31 H 0.16 2.17 6.23 -2.91 -0.02 2.15 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.12 4.04 8.02 -2.91 -0.02 4.02 16 34 H 0.10 4.41 8.02 -2.91 -0.02 4.39 16 35 H 0.10 5.57 6.18 -2.91 -0.02 5.55 16 36 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 37 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.07 2.28 7.45 -2.39 -0.02 2.27 16 39 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 40 H 0.06 2.13 6.44 -2.39 -0.02 2.12 16 41 H 0.13 3.89 6.78 -2.91 -0.02 3.87 16 42 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -63.50 356.04 6.01 -57.49 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 1.02 Total: 31.77 kcal Atomic # 6 Polarization: -82.46 SS G_CDS: 3.68 Total: -78.78 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.24 Total: -42.79 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.96 Total: -7.72 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -63.50 6.01 -57.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239841146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.112 kcal (2) G-P(sol) polarization free energy of solvation -63.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds