Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35850 * 116.99818 * 2 1 4 4 C 1.39869 * 119.63765 * 0.02562 * 3 2 1 5 5 C 1.35936 * 120.89735 * 179.97438 * 4 3 2 6 6 C 1.40728 * 119.88517 * 359.97438 * 5 4 3 7 7 C 1.40239 * 120.98939 * 180.02562 * 6 5 4 8 8 C 1.38631 * 119.47136 * 179.97438 * 7 6 5 9 9 C 1.47862 * 119.74094 * 179.97438 * 8 7 6 10 10 C 1.40026 * 119.88719 * 0.02562 * 9 8 7 11 11 C 1.36185 * 120.11433 * 180.02562 * 10 9 8 12 12 C 1.40976 * 119.88430 * 359.97438 * 11 10 9 13 13 C 1.40985 * 120.11452 * 179.73115 * 12 11 10 14 14 H 1.07997 * 120.00255 * 153.63385 * 13 12 11 15 15 C 1.39982 * 119.99570 * 333.62390 * 13 12 11 16 16 N 1.30808 * 120.00375 * 343.80526 * 15 13 12 17 17 Si 1.86800 * 119.99776 * 163.80078 * 15 13 12 18 18 H 1.48501 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47080 * 119.99894 * 17 15 13 20 20 H 1.48496 * 109.47245 * 240.00540 * 17 15 13 21 21 C 1.40942 * 119.77671 * 0.02562 * 12 11 10 22 22 C 1.50701 * 120.06228 * 179.97438 * 21 12 11 23 23 C 1.36231 * 119.87913 * 0.02562 * 21 12 11 24 24 C 1.40663 * 120.51146 * 0.27266 * 8 7 6 25 25 C 1.35663 * 120.82486 * 359.40947 * 24 8 7 26 26 C 1.40823 * 120.03391 * 0.61288 * 25 24 8 27 27 C 1.37705 * 119.63175 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46950 * 59.99944 * 1 2 3 29 29 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46810 * 299.99927 * 1 2 3 31 31 H 1.07999 * 119.54754 * 359.95302 * 4 3 2 32 32 H 1.08001 * 120.05827 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.26450 * 359.95515 * 7 6 5 34 34 H 1.07998 * 119.94428 * 0.03719 * 10 9 8 35 35 H 1.08004 * 120.06004 * 179.97438 * 11 10 9 36 36 H 0.97001 * 120.00230 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46942 * 89.99463 * 22 21 12 38 38 H 1.08990 * 109.46990 * 209.99991 * 22 21 12 39 39 H 1.08999 * 109.46736 * 330.00413 * 22 21 12 40 40 H 1.08001 * 119.93985 * 180.02562 * 23 21 12 41 41 H 1.08003 * 119.58446 * 179.70167 * 24 8 7 42 42 H 1.08002 * 119.98766 * 180.30169 * 25 24 8 43 43 H 1.07994 * 120.20865 * 0.04065 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2765 2.3786 0.0005 5 6 1.8668 3.6031 0.0011 6 6 3.2704 3.7049 0.0016 7 6 3.9036 4.9562 0.0027 8 6 5.2885 5.0197 0.0038 9 6 5.9624 6.3359 0.0044 10 6 5.1997 7.5102 0.0044 11 6 5.8155 8.7249 0.0044 12 6 7.2234 8.7986 0.0049 13 6 7.8660 10.0535 -0.0008 14 1 8.8577 10.1543 0.4147 15 6 7.2185 11.1688 -0.5452 16 7 6.1782 11.0069 -1.3214 17 14 7.8402 12.8884 -0.1632 18 1 9.0220 12.8000 0.7317 19 1 8.2260 13.5673 -1.4263 20 1 6.7673 13.6648 0.5085 21 6 7.9864 7.6136 0.0049 22 6 9.4917 7.6849 0.0049 23 6 7.3606 6.4035 0.0039 24 6 6.0575 3.8419 -0.0020 25 6 5.4621 2.6230 0.0033 26 6 4.0573 2.5247 0.0017 27 6 3.4213 1.2737 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.1989 2.3067 0.0002 32 1 1.2597 4.4963 0.0019 33 1 3.3171 5.8630 0.0024 34 1 4.1213 7.4526 0.0046 35 1 5.2264 9.6301 0.0040 36 1 5.7293 11.7798 -1.6984 37 1 9.8546 7.7022 1.0326 38 1 9.8967 6.8132 -0.5089 39 1 9.8124 8.5912 -0.5089 40 1 7.9443 5.4948 0.0043 41 1 7.1354 3.9089 -0.0060 42 1 6.0657 1.7274 0.0037 43 1 4.0070 0.3664 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239841361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = 10.006998 kcal Electronic energy + Delta-G solvation = -24464.401344 eV Core-core repulsion = 21017.505818 eV Total energy + Delta-G solvation = -3446.895526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.33288 -38.86178 -37.80762 -35.42466 -33.80427 -32.64319 -31.50115 -30.42316 -29.39485 -28.53393 -26.99880 -26.33066 -24.67882 -23.14661 -22.36818 -21.75331 -20.58638 -19.41246 -18.12144 -17.43102 -16.74119 -16.51569 -15.77554 -15.64597 -15.17600 -14.58656 -14.42178 -14.04309 -13.56375 -13.56061 -13.26333 -13.11907 -12.88383 -12.68409 -12.60774 -12.41155 -11.94057 -11.87117 -11.81866 -11.38659 -11.34238 -11.23312 -11.07082 -10.97968 -10.78000 -10.50708 -10.45501 -10.24744 -9.64475 -9.55240 -9.40705 -9.21196 -8.21733 -7.73440 -7.51015 -7.00507 -6.78200 -4.46002 0.78891 1.25779 2.28625 2.63105 2.95641 2.96776 3.00531 3.02097 3.27734 3.52140 3.77692 4.34843 4.68517 4.73248 4.90673 4.95637 4.99061 5.18839 5.28179 5.35031 5.47191 5.52098 5.54566 5.62222 5.78140 5.90794 6.06219 6.14636 6.17650 6.29030 6.33197 6.41116 6.53136 6.54255 6.59548 6.66652 6.81190 6.85225 6.91176 6.95855 7.03531 7.14618 7.33145 7.36637 7.47017 7.52244 7.81429 7.91587 8.02373 8.12690 8.45057 8.68462 8.80939 9.95638 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.002514 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.271930 B =11133.359664 C =12052.122723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.099 3.901 4 C -0.192 4.192 5 C -0.074 4.074 6 C -0.057 4.057 7 C -0.144 4.144 8 C 0.019 3.981 9 C -0.202 4.202 10 C -0.078 4.078 11 C -0.168 4.168 12 C 0.123 3.877 13 C -0.441 4.441 14 H 0.085 0.915 15 C 0.072 3.928 16 N -0.778 5.778 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.270 1.270 21 C -0.201 4.201 22 C -0.086 4.086 23 C -0.061 4.061 24 C -0.107 4.107 25 C -0.116 4.116 26 C -0.042 4.042 27 C -0.141 4.141 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.284 0.716 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -11.971 1.681 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.055 3.945 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.058 4.058 7 C -0.162 4.162 8 C 0.019 3.981 9 C -0.203 4.203 10 C -0.096 4.096 11 C -0.187 4.187 12 C 0.120 3.880 13 C -0.469 4.469 14 H 0.103 0.897 15 C -0.148 4.148 16 N -0.402 5.402 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.202 4.202 22 C -0.143 4.143 23 C -0.079 4.079 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.042 4.042 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.208 -12.007 1.523 14.087 hybrid contribution -0.202 0.960 0.006 0.981 sum -7.411 -11.047 1.529 13.390 Atomic orbital electron populations 1.22981 0.79006 1.03459 1.01157 1.86029 1.20892 1.27303 1.89442 1.18826 0.92093 0.83761 0.99807 1.20876 0.99624 0.92480 1.08076 1.20872 0.93700 0.97059 0.97580 1.17970 0.92842 0.93224 1.01725 1.21222 0.94155 0.95723 1.05074 1.18946 0.92365 0.92974 0.93779 1.18058 0.92670 0.90369 1.19216 1.20518 0.97271 0.92545 0.99278 1.20969 0.94865 0.96223 1.06692 1.17614 0.91774 0.91877 0.86773 1.19741 1.02431 0.92305 1.32401 0.89691 1.26043 0.94053 1.01961 0.92714 1.69823 1.16527 1.33346 1.20457 0.86214 0.80105 0.80856 0.79411 1.18161 1.19775 1.19497 1.19454 0.94593 0.92980 1.13188 1.20418 0.93276 1.00803 0.99776 1.20283 0.93012 0.95928 0.98705 1.21026 1.00110 0.91800 0.99538 1.20759 0.92841 0.97686 1.02134 1.17689 0.93416 0.91637 1.01477 1.20318 0.91185 0.97295 1.07180 0.92888 0.88631 0.92903 0.85914 0.85582 0.85777 0.89000 0.86424 0.90490 0.93916 0.94224 0.92005 0.88888 0.85953 0.86165 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.80 101.05 0.99 1.23 16 2 O -0.32 -4.00 10.48 -19.27 -0.20 -4.20 16 3 C 0.10 1.37 6.67 -39.17 -0.26 1.11 16 4 C -0.19 -2.46 8.94 -39.80 -0.36 -2.81 16 5 C -0.07 -1.04 9.74 -39.47 -0.38 -1.43 16 6 C -0.06 -0.95 5.74 -106.83 -0.61 -1.57 16 7 C -0.14 -2.58 9.17 -38.68 -0.35 -2.94 16 8 C 0.02 0.38 5.88 -104.90 -0.62 -0.24 16 9 C -0.20 -4.41 5.90 -104.63 -0.62 -5.03 16 10 C -0.08 -1.77 9.34 -39.65 -0.37 -2.14 16 11 C -0.17 -4.18 8.60 -39.28 -0.34 -4.51 16 12 C 0.12 3.08 5.56 -106.80 -0.59 2.49 16 13 C -0.44 -10.85 8.09 -37.89 -0.31 -11.15 16 14 H 0.09 2.00 6.88 -52.49 -0.36 1.64 16 15 C 0.07 1.70 5.15 -17.33 -0.09 1.61 16 16 N -0.78 -18.93 10.97 55.55 0.61 -18.32 16 17 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.20 -4.63 5.90 -104.32 -0.62 -5.25 16 22 C -0.09 -1.69 9.40 36.01 0.34 -1.35 16 23 C -0.06 -1.33 8.99 -39.65 -0.36 -1.68 16 24 C -0.11 -1.83 9.32 -39.59 -0.37 -2.20 16 25 C -0.12 -1.79 9.73 -39.53 -0.38 -2.18 16 26 C -0.04 -0.67 5.75 -106.75 -0.61 -1.29 16 27 C -0.14 -2.05 9.72 -38.99 -0.38 -2.43 16 28 H 0.05 0.38 7.64 -51.93 -0.40 -0.01 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.38 7.64 -51.93 -0.40 -0.02 16 31 H 0.12 1.22 6.22 -52.49 -0.33 0.89 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 2.13 6.13 -52.49 -0.32 1.81 16 34 H 0.09 1.89 6.14 -52.49 -0.32 1.56 16 35 H 0.12 2.99 6.23 -52.48 -0.33 2.67 16 36 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.06 1.24 6.77 -51.93 -0.35 0.89 16 40 H 0.09 1.77 6.13 -52.49 -0.32 1.45 16 41 H 0.12 1.93 6.12 -52.48 -0.32 1.60 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -27.32 352.48 -10.72 -38.04 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.11 Total: 8.50 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: -6.29 Total: -41.76 kcal Atomic # 7 Polarization: -18.93 SS G_CDS: 0.61 Total: -18.32 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.32 -10.72 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239841361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.044 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds