Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35850 * 116.99818 * 2 1 4 4 C 1.39869 * 119.63765 * 0.02562 * 3 2 1 5 5 C 1.35936 * 120.89735 * 179.97438 * 4 3 2 6 6 C 1.40728 * 119.88517 * 359.97438 * 5 4 3 7 7 C 1.40239 * 120.98939 * 180.02562 * 6 5 4 8 8 C 1.38631 * 119.47136 * 179.97438 * 7 6 5 9 9 C 1.47862 * 119.74094 * 179.97438 * 8 7 6 10 10 C 1.40026 * 119.88719 * 0.02562 * 9 8 7 11 11 C 1.36185 * 120.11433 * 180.02562 * 10 9 8 12 12 C 1.40976 * 119.88430 * 359.97438 * 11 10 9 13 13 C 1.40985 * 120.11452 * 179.73115 * 12 11 10 14 14 H 1.07997 * 120.00255 * 153.63385 * 13 12 11 15 15 C 1.39982 * 119.99570 * 333.62390 * 13 12 11 16 16 N 1.30808 * 120.00375 * 343.80526 * 15 13 12 17 17 Si 1.86800 * 119.99776 * 163.80078 * 15 13 12 18 18 H 1.48501 * 109.46919 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47080 * 119.99894 * 17 15 13 20 20 H 1.48496 * 109.47245 * 240.00540 * 17 15 13 21 21 C 1.40942 * 119.77671 * 0.02562 * 12 11 10 22 22 C 1.50701 * 120.06228 * 179.97438 * 21 12 11 23 23 C 1.36231 * 119.87913 * 0.02562 * 21 12 11 24 24 C 1.40663 * 120.51146 * 0.27266 * 8 7 6 25 25 C 1.35663 * 120.82486 * 359.40947 * 24 8 7 26 26 C 1.40823 * 120.03391 * 0.61288 * 25 24 8 27 27 C 1.37705 * 119.63175 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46950 * 59.99944 * 1 2 3 29 29 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46810 * 299.99927 * 1 2 3 31 31 H 1.07999 * 119.54754 * 359.95302 * 4 3 2 32 32 H 1.08001 * 120.05827 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.26450 * 359.95515 * 7 6 5 34 34 H 1.07998 * 119.94428 * 0.03719 * 10 9 8 35 35 H 1.08004 * 120.06004 * 179.97438 * 11 10 9 36 36 H 0.97001 * 120.00230 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.46942 * 89.99463 * 22 21 12 38 38 H 1.08990 * 109.46990 * 209.99991 * 22 21 12 39 39 H 1.08999 * 109.46736 * 330.00413 * 22 21 12 40 40 H 1.08001 * 119.93985 * 180.02562 * 23 21 12 41 41 H 1.08003 * 119.58446 * 179.70167 * 24 8 7 42 42 H 1.08002 * 119.98766 * 180.30169 * 25 24 8 43 43 H 1.07994 * 120.20865 * 0.04065 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2765 2.3786 0.0005 5 6 1.8668 3.6031 0.0011 6 6 3.2704 3.7049 0.0016 7 6 3.9036 4.9562 0.0027 8 6 5.2885 5.0197 0.0038 9 6 5.9624 6.3359 0.0044 10 6 5.1997 7.5102 0.0044 11 6 5.8155 8.7249 0.0044 12 6 7.2234 8.7986 0.0049 13 6 7.8660 10.0535 -0.0008 14 1 8.8577 10.1543 0.4147 15 6 7.2185 11.1688 -0.5452 16 7 6.1782 11.0069 -1.3214 17 14 7.8402 12.8884 -0.1632 18 1 9.0220 12.8000 0.7317 19 1 8.2260 13.5673 -1.4263 20 1 6.7673 13.6648 0.5085 21 6 7.9864 7.6136 0.0049 22 6 9.4917 7.6849 0.0049 23 6 7.3606 6.4035 0.0039 24 6 6.0575 3.8419 -0.0020 25 6 5.4621 2.6230 0.0033 26 6 4.0573 2.5247 0.0017 27 6 3.4213 1.2737 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.1989 2.3067 0.0002 32 1 1.2597 4.4963 0.0019 33 1 3.3171 5.8630 0.0024 34 1 4.1213 7.4526 0.0046 35 1 5.2264 9.6301 0.0040 36 1 5.7293 11.7798 -1.6984 37 1 9.8546 7.7022 1.0326 38 1 9.8967 6.8132 -0.5089 39 1 9.8124 8.5912 -0.5089 40 1 7.9443 5.4948 0.0043 41 1 7.1354 3.9089 -0.0060 42 1 6.0657 1.7274 0.0037 43 1 4.0070 0.3664 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239841361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -0.376569 kcal Electronic energy + Delta-G solvation = -24464.851610 eV Core-core repulsion = 21017.505818 eV Total energy + Delta-G solvation = -3447.345792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46796 -40.14709 -39.27698 -36.71834 -35.41644 -34.02931 -32.97391 -31.96083 -30.61554 -29.86580 -28.08987 -27.81140 -26.24480 -24.38439 -23.78571 -22.99932 -22.12508 -20.99220 -19.37505 -18.95967 -18.01113 -17.72503 -17.17734 -16.60573 -16.48614 -15.93631 -15.75650 -15.47818 -14.99370 -14.91655 -14.53222 -14.45366 -14.30498 -14.18803 -13.88073 -13.56231 -13.38305 -13.24545 -13.01777 -12.87495 -12.83474 -12.78594 -12.38354 -12.30633 -12.20900 -11.97405 -11.65273 -11.49414 -11.32112 -11.13107 -11.05346 -10.66210 -9.53044 -9.26602 -9.11898 -8.69516 -8.26149 -6.26925 -0.41817 -0.00774 0.88456 1.18626 1.23717 1.38483 1.50241 1.53325 2.14708 2.19399 2.41250 2.76434 3.26684 3.68390 3.77114 3.89432 3.97893 4.06712 4.21688 4.31377 4.33860 4.42127 4.43013 4.50241 4.51988 4.53909 4.73782 4.74387 4.86011 4.87168 4.97263 5.04448 5.08601 5.13916 5.24619 5.28412 5.31988 5.35365 5.38647 5.47429 5.59844 5.72470 5.77784 5.79731 5.97976 6.13704 6.18689 6.30239 6.35775 6.47575 6.66510 6.90110 7.03371 8.27554 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.002514 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.271930 B =11133.359664 C =12052.122723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.107 3.893 4 C -0.185 4.185 5 C -0.080 4.080 6 C -0.082 4.082 7 C -0.140 4.140 8 C -0.015 4.015 9 C -0.194 4.194 10 C -0.092 4.092 11 C -0.191 4.191 12 C 0.088 3.912 13 C -0.475 4.475 14 H 0.085 0.915 15 C 0.032 3.968 16 N -0.817 5.817 17 Si 0.982 3.018 18 H -0.255 1.255 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.215 4.215 22 C -0.080 4.080 23 C -0.073 4.073 24 C -0.118 4.118 25 C -0.109 4.109 26 C -0.048 4.048 27 C -0.158 4.158 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.289 0.711 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -14.763 1.949 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.062 3.938 4 C -0.203 4.203 5 C -0.098 4.098 6 C -0.082 4.082 7 C -0.158 4.158 8 C -0.015 4.015 9 C -0.195 4.195 10 C -0.110 4.110 11 C -0.211 4.211 12 C 0.085 3.915 13 C -0.503 4.503 14 H 0.103 0.897 15 C -0.184 4.184 16 N -0.443 5.443 17 Si 0.802 3.198 18 H -0.178 1.178 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.217 4.217 22 C -0.137 4.137 23 C -0.091 4.091 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.048 4.048 27 C -0.176 4.176 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.397 -14.826 1.793 17.132 hybrid contribution -0.181 1.334 -0.068 1.348 sum -8.577 -13.492 1.725 16.080 Atomic orbital electron populations 1.23351 0.76563 1.05599 1.02225 1.86033 1.23401 1.26496 1.88877 1.19043 0.92223 0.84706 0.97787 1.21227 1.01364 0.91519 1.06188 1.21121 0.92836 0.98576 0.97231 1.18187 0.94285 0.92781 1.02932 1.21353 0.93911 0.96608 1.03916 1.18957 0.93112 0.92544 0.96887 1.18420 0.93093 0.91340 1.16675 1.20720 0.98181 0.92499 0.99600 1.20947 0.95216 0.96336 1.08589 1.17973 0.92198 0.93184 0.88142 1.19898 1.02967 0.93157 1.34292 0.89657 1.26852 0.94065 1.05494 0.91974 1.69883 1.18040 1.34564 1.21769 0.85157 0.79487 0.75882 0.79249 1.17808 1.19111 1.19074 1.19908 0.96395 0.92862 1.12487 1.20396 0.91196 1.01361 1.00743 1.20601 0.93331 0.96584 0.98612 1.21109 1.00562 0.91629 1.00264 1.21087 0.93040 0.98159 1.00397 1.17970 0.93893 0.92159 1.00773 1.20498 0.92032 0.97220 1.07872 0.91782 0.86220 0.91749 0.82636 0.83752 0.85944 0.87716 0.88205 0.89996 0.92652 0.91903 0.92989 0.86156 0.84928 0.83026 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.80 113.37 1.11 1.31 16 2 O -0.33 -7.02 10.48 -91.86 -0.96 -7.99 16 3 C 0.11 2.60 6.67 22.54 0.15 2.75 16 4 C -0.18 -4.06 8.94 22.13 0.20 -3.86 16 5 C -0.08 -2.05 9.74 22.34 0.22 -1.83 16 6 C -0.08 -2.59 5.74 -21.29 -0.12 -2.71 16 7 C -0.14 -5.01 9.17 22.85 0.21 -4.80 16 8 C -0.01 -0.58 5.88 -20.04 -0.12 -0.69 16 9 C -0.19 -8.68 5.90 -19.87 -0.12 -8.79 16 10 C -0.09 -4.38 9.34 22.23 0.21 -4.18 16 11 C -0.19 -10.13 8.60 22.46 0.19 -9.93 16 12 C 0.09 4.64 5.56 -21.27 -0.12 4.52 16 13 C -0.47 -24.59 8.09 23.37 0.19 -24.41 16 14 H 0.09 4.21 6.88 -2.91 -0.02 4.19 16 15 C 0.03 1.57 5.15 85.27 0.44 2.01 16 16 N -0.82 -42.03 10.97 21.83 0.24 -41.79 16 17 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 18 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 19 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.22 -10.20 5.90 -19.67 -0.12 -10.32 16 22 C -0.08 -3.17 9.40 71.24 0.67 -2.50 16 23 C -0.07 -3.22 8.99 22.23 0.20 -3.02 16 24 C -0.12 -3.89 9.32 22.27 0.21 -3.68 16 25 C -0.11 -3.13 9.73 22.31 0.22 -2.91 16 26 C -0.05 -1.43 5.75 -21.24 -0.12 -1.56 16 27 C -0.16 -4.12 9.72 22.65 0.22 -3.90 16 28 H 0.06 0.64 7.64 -2.39 -0.02 0.62 16 29 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.64 7.64 -2.39 -0.02 0.62 16 31 H 0.16 2.35 6.22 -2.91 -0.02 2.33 16 32 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.12 4.27 6.13 -2.91 -0.02 4.25 16 34 H 0.10 4.53 6.14 -2.91 -0.02 4.51 16 35 H 0.10 5.50 6.23 -2.91 -0.02 5.48 16 36 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 39 H 0.05 2.13 6.77 -2.39 -0.02 2.11 16 40 H 0.12 4.48 6.13 -2.91 -0.02 4.47 16 41 H 0.13 3.97 6.12 -2.91 -0.02 3.95 16 42 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -62.28 352.48 6.07 -56.21 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 1.04 Total: 32.98 kcal Atomic # 6 Polarization: -82.23 SS G_CDS: 3.72 Total: -78.51 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.24 Total: -41.79 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.96 Total: -7.99 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -62.28 6.07 -56.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239841361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.837 kcal (2) G-P(sol) polarization free energy of solvation -62.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds