Wall clock time and date at job start Tue Mar 31 2020 12:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35591 * 117.00257 * 2 1 4 4 C 1.39128 * 119.89180 * 0.24396 * 3 2 1 5 5 C 1.36418 * 120.45228 * 180.27521 * 4 3 2 6 6 C 1.40943 * 120.21355 * 359.76193 * 5 4 3 7 7 C 1.41251 * 120.10705 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00139 * 24.59906 * 7 6 5 9 9 C 1.39854 * 119.99752 * 204.59770 * 7 6 5 10 10 N 1.30896 * 119.99656 * 17.96557 * 9 7 6 11 11 Si 1.86797 * 119.99863 * 197.96480 * 9 7 6 12 12 H 1.48502 * 109.46966 * 89.99982 * 11 9 7 13 13 H 1.48502 * 109.46998 * 209.99819 * 11 9 7 14 14 H 1.48503 * 109.47439 * 330.00082 * 11 9 7 15 15 C 1.40567 * 119.77829 * 359.97438 * 6 5 4 16 16 C 1.38737 * 119.55795 * 359.97438 * 15 6 5 17 17 C 1.48069 * 120.10730 * 180.02562 * 16 15 6 18 18 C 1.38409 * 120.35724 * 65.01847 * 17 16 15 19 19 C 1.39002 * 120.69338 * 179.97438 * 18 17 16 20 20 C 1.36232 * 121.13982 * 359.97438 * 19 18 17 21 21 C 1.50696 * 119.96671 * 180.02562 * 20 19 18 22 22 C 1.40542 * 120.06798 * 0.04049 * 20 19 18 23 23 C 1.40575 * 121.16551 * 179.97438 * 22 20 19 24 24 C 1.36119 * 119.65639 * 180.22749 * 23 22 20 25 25 C 1.39326 * 120.95501 * 359.45550 * 24 23 22 26 26 C 1.36205 * 120.94262 * 0.57505 * 25 24 23 27 27 C 1.40225 * 119.68629 * 359.70904 * 26 25 24 28 28 H 1.08997 * 109.47459 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46563 * 299.99049 * 1 2 3 30 30 H 1.08998 * 109.47682 * 59.98702 * 1 2 3 31 31 H 1.08006 * 119.77359 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.89251 * 179.74468 * 5 4 3 33 33 H 0.97006 * 120.00059 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.22260 * 180.02562 * 15 6 5 35 35 H 1.08008 * 119.65534 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.43424 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46969 * 270.03894 * 21 20 19 38 38 H 1.09000 * 109.47372 * 30.03930 * 21 20 19 39 39 H 1.09002 * 109.47651 * 150.04510 * 21 20 19 40 40 H 1.08007 * 120.17722 * 359.95842 * 23 22 20 41 41 H 1.08001 * 119.52284 * 179.75097 * 24 23 22 42 42 H 1.07994 * 119.52526 * 180.28255 * 25 24 23 43 43 H 1.08008 * 120.15515 * 179.68204 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2846 2.3735 0.0051 5 6 1.8921 3.5950 -0.0005 6 6 3.2984 3.6877 -0.0065 7 6 3.9250 4.9536 -0.0117 8 1 3.4041 5.8156 0.3780 9 6 5.2201 5.0907 -0.5215 10 7 5.7185 4.1638 -1.2999 11 14 6.2386 6.5964 -0.0916 12 1 7.0199 6.3296 1.1427 13 1 7.1676 6.9012 -1.2093 14 1 5.3379 7.7555 0.1336 15 6 4.0753 2.5162 -0.0061 16 6 3.4478 1.2789 0.0007 17 6 4.2543 0.0371 0.0017 18 6 5.0627 -0.2711 1.0821 19 6 5.8223 -1.4352 1.0906 20 6 5.7931 -2.3031 0.0410 21 6 6.6270 -3.5578 0.0784 22 6 4.9864 -2.0294 -1.0769 23 6 4.9393 -2.9086 -2.1727 24 6 4.1508 -2.6109 -3.2416 25 6 3.3791 -1.4511 -3.2619 26 6 3.4011 -0.5769 -2.2176 27 6 4.2061 -0.8479 -1.1019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 0.2064 2.3107 0.0087 32 1 1.2934 4.4938 -0.0006 33 1 6.6167 4.2589 -1.6538 34 1 5.1535 2.5789 -0.0103 35 1 5.1031 0.3995 1.9278 36 1 6.4457 -1.6558 1.9445 37 1 7.6080 -3.3550 -0.3513 38 1 6.7435 -3.8860 1.1112 39 1 6.1327 -4.3400 -0.4979 40 1 5.5289 -3.8135 -2.1686 41 1 4.1193 -3.2859 -4.0841 42 1 2.7582 -1.2399 -4.1199 43 1 2.8016 0.3210 -2.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241005548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:45 Heat of formation + Delta-G solvation = 16.349440 kcal Electronic energy + Delta-G solvation = -26070.116099 eV Core-core repulsion = 22623.495602 eV Total energy + Delta-G solvation = -3446.620498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.11723 -38.67517 -36.48095 -36.01858 -34.00784 -33.10952 -30.06344 -29.81904 -29.43436 -29.11246 -26.93684 -25.89694 -24.61975 -22.90274 -22.50528 -21.45689 -20.66023 -19.39845 -17.48449 -16.93635 -16.85908 -16.26319 -15.55114 -15.24695 -14.84949 -14.70214 -14.09837 -13.94328 -13.77167 -13.49645 -13.13949 -13.02014 -12.81358 -12.67507 -12.36165 -12.22051 -12.06113 -11.77190 -11.58633 -11.47606 -11.28652 -11.09342 -10.83115 -10.72333 -10.60764 -10.47113 -10.39839 -9.98520 -9.89048 -9.43879 -9.21377 -9.03108 -8.13316 -7.71610 -7.21395 -6.94706 -6.73935 -4.29737 0.99429 1.52209 2.43174 2.74584 2.83191 3.07832 3.10683 3.16651 3.48413 3.93343 4.31186 4.51289 4.62529 4.99447 5.14917 5.24863 5.33415 5.42962 5.48670 5.58219 5.63314 5.66937 5.70743 5.74487 5.82441 5.87192 5.91019 5.94998 6.00063 6.08305 6.28594 6.41162 6.49322 6.59301 6.72381 6.72578 6.90007 6.91947 7.00300 7.04631 7.12566 7.22070 7.31527 7.34912 7.47407 7.52221 7.71298 7.91552 8.12604 8.40373 8.58063 8.85115 8.90414 10.19153 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.004891 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.216621 B = 5722.878841 C = 6818.133045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.012 3.988 4 C -0.170 4.170 5 C -0.188 4.188 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.795 5.795 11 Si 0.906 3.094 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.111 4.111 16 C -0.070 4.070 17 C 0.022 3.978 18 C -0.125 4.125 19 C -0.105 4.105 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.043 4.043 23 C -0.125 4.125 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.063 4.063 27 C -0.034 4.034 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.281 0.719 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -11.136 0.029 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.236 6.236 3 C -0.031 4.031 4 C -0.188 4.188 5 C -0.207 4.207 6 C 0.084 3.916 7 C -0.493 4.493 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.421 5.421 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.131 4.131 16 C -0.071 4.071 17 C 0.022 3.978 18 C -0.143 4.143 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.165 4.165 22 C -0.043 4.043 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.160 4.160 26 C -0.081 4.081 27 C -0.034 4.034 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.676 -11.369 -0.123 11.390 hybrid contribution 0.156 1.005 0.071 1.019 sum -0.521 -10.364 -0.052 10.378 Atomic orbital electron populations 1.22710 0.81193 1.01719 1.00212 1.85913 1.18816 1.28098 1.90818 1.18510 0.90605 0.83134 1.10895 1.20355 0.97449 0.92821 1.08219 1.20638 0.94812 0.95141 1.10138 1.17492 0.90543 0.93287 0.90261 1.19441 0.98669 0.94917 1.36283 0.90440 1.25858 0.97973 0.97710 0.92627 1.69829 1.16449 1.33576 1.22263 0.86345 0.79761 0.81799 0.79027 1.19300 1.20368 1.18697 1.21333 0.99973 0.89003 1.02756 1.17816 0.88845 0.92048 1.08341 1.18913 0.93975 0.92744 0.92151 1.21126 0.97578 0.97132 0.98442 1.20543 0.99286 0.94468 0.97985 1.19551 0.99095 0.97405 0.94325 1.20730 0.98819 0.94837 1.02096 1.17821 0.97286 0.94572 0.94619 1.20909 1.00398 0.99220 0.93727 1.20726 0.97257 0.97277 0.98096 1.20759 1.00915 0.95348 0.99010 1.21123 0.96103 0.98839 0.91999 1.18026 0.96903 0.93792 0.94700 0.90104 0.94009 0.93973 0.88402 0.88600 0.90823 0.85278 0.86088 0.86619 0.91610 0.91893 0.91757 0.86151 0.86807 0.86690 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.32 -6.49 8.99 -18.47 -0.17 -6.65 16 3 C 0.01 0.27 5.53 -38.40 -0.21 0.06 16 4 C -0.17 -3.69 8.95 -39.91 -0.36 -4.05 16 5 C -0.19 -4.44 9.72 -39.21 -0.38 -4.82 16 6 C 0.09 2.23 5.57 -106.85 -0.60 1.64 16 7 C -0.46 -11.97 9.03 -37.83 -0.34 -12.31 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.08 1.87 5.13 -17.35 -0.09 1.78 16 10 N -0.80 -20.38 10.97 55.54 0.61 -19.77 16 11 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 14 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 15 C -0.11 -2.82 8.37 -38.52 -0.32 -3.14 16 16 C -0.07 -1.62 4.50 -104.82 -0.47 -2.10 16 17 C 0.02 0.47 4.96 -104.54 -0.52 -0.04 16 18 C -0.12 -2.39 9.69 -39.24 -0.38 -2.77 16 19 C -0.10 -1.72 9.56 -40.02 -0.38 -2.10 16 20 C -0.10 -1.65 5.89 -104.48 -0.62 -2.27 16 21 C -0.11 -1.27 9.52 36.00 0.34 -0.92 16 22 C -0.04 -0.76 5.74 -106.86 -0.61 -1.37 16 23 C -0.12 -1.88 9.27 -39.46 -0.37 -2.25 16 24 C -0.12 -1.69 9.95 -39.94 -0.40 -2.08 16 25 C -0.14 -2.32 9.95 -39.91 -0.40 -2.72 16 26 C -0.06 -1.22 8.53 -39.57 -0.34 -1.56 16 27 C -0.03 -0.69 5.56 -106.60 -0.59 -1.28 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 30 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.10 1.85 6.26 -52.48 -0.33 1.52 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 34 H 0.13 3.43 6.16 -52.49 -0.32 3.11 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.06 0.68 6.40 -51.93 -0.33 0.35 16 40 H 0.12 1.46 6.34 -52.48 -0.33 1.13 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.71 6.35 -52.48 -0.33 2.37 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -28.30 353.76 -10.67 -38.96 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.37 Total: 9.38 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: -6.04 Total: -40.74 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.61 Total: -19.77 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.17 Total: -6.65 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.30 -10.67 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241005548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.314 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds