Wall clock time and date at job start Tue Mar 31 2020 12:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35591 * 117.00257 * 2 1 4 4 C 1.39128 * 119.89180 * 0.24396 * 3 2 1 5 5 C 1.36418 * 120.45228 * 180.27521 * 4 3 2 6 6 C 1.40943 * 120.21355 * 359.76193 * 5 4 3 7 7 C 1.41251 * 120.10705 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00139 * 24.59906 * 7 6 5 9 9 C 1.39854 * 119.99752 * 204.59770 * 7 6 5 10 10 N 1.30896 * 119.99656 * 17.96557 * 9 7 6 11 11 Si 1.86797 * 119.99863 * 197.96480 * 9 7 6 12 12 H 1.48502 * 109.46966 * 89.99982 * 11 9 7 13 13 H 1.48502 * 109.46998 * 209.99819 * 11 9 7 14 14 H 1.48503 * 109.47439 * 330.00082 * 11 9 7 15 15 C 1.40567 * 119.77829 * 359.97438 * 6 5 4 16 16 C 1.38737 * 119.55795 * 359.97438 * 15 6 5 17 17 C 1.48069 * 120.10730 * 180.02562 * 16 15 6 18 18 C 1.38409 * 120.35724 * 65.01847 * 17 16 15 19 19 C 1.39002 * 120.69338 * 179.97438 * 18 17 16 20 20 C 1.36232 * 121.13982 * 359.97438 * 19 18 17 21 21 C 1.50696 * 119.96671 * 180.02562 * 20 19 18 22 22 C 1.40542 * 120.06798 * 0.04049 * 20 19 18 23 23 C 1.40575 * 121.16551 * 179.97438 * 22 20 19 24 24 C 1.36119 * 119.65639 * 180.22749 * 23 22 20 25 25 C 1.39326 * 120.95501 * 359.45550 * 24 23 22 26 26 C 1.36205 * 120.94262 * 0.57505 * 25 24 23 27 27 C 1.40225 * 119.68629 * 359.70904 * 26 25 24 28 28 H 1.08997 * 109.47459 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46563 * 299.99049 * 1 2 3 30 30 H 1.08998 * 109.47682 * 59.98702 * 1 2 3 31 31 H 1.08006 * 119.77359 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.89251 * 179.74468 * 5 4 3 33 33 H 0.97006 * 120.00059 * 179.97438 * 10 9 7 34 34 H 1.07999 * 120.22260 * 180.02562 * 15 6 5 35 35 H 1.08008 * 119.65534 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.43424 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46969 * 270.03894 * 21 20 19 38 38 H 1.09000 * 109.47372 * 30.03930 * 21 20 19 39 39 H 1.09002 * 109.47651 * 150.04510 * 21 20 19 40 40 H 1.08007 * 120.17722 * 359.95842 * 23 22 20 41 41 H 1.08001 * 119.52284 * 179.75097 * 24 23 22 42 42 H 1.07994 * 119.52526 * 180.28255 * 25 24 23 43 43 H 1.08008 * 120.15515 * 179.68204 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2846 2.3735 0.0051 5 6 1.8921 3.5950 -0.0005 6 6 3.2984 3.6877 -0.0065 7 6 3.9250 4.9536 -0.0117 8 1 3.4041 5.8156 0.3780 9 6 5.2201 5.0907 -0.5215 10 7 5.7185 4.1638 -1.2999 11 14 6.2386 6.5964 -0.0916 12 1 7.0199 6.3296 1.1427 13 1 7.1676 6.9012 -1.2093 14 1 5.3379 7.7555 0.1336 15 6 4.0753 2.5162 -0.0061 16 6 3.4478 1.2789 0.0007 17 6 4.2543 0.0371 0.0017 18 6 5.0627 -0.2711 1.0821 19 6 5.8223 -1.4352 1.0906 20 6 5.7931 -2.3031 0.0410 21 6 6.6270 -3.5578 0.0784 22 6 4.9864 -2.0294 -1.0769 23 6 4.9393 -2.9086 -2.1727 24 6 4.1508 -2.6109 -3.2416 25 6 3.3791 -1.4511 -3.2619 26 6 3.4011 -0.5769 -2.2176 27 6 4.2061 -0.8479 -1.1019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 0.2064 2.3107 0.0087 32 1 1.2934 4.4938 -0.0006 33 1 6.6167 4.2589 -1.6538 34 1 5.1535 2.5789 -0.0103 35 1 5.1031 0.3995 1.9278 36 1 6.4457 -1.6558 1.9445 37 1 7.6080 -3.3550 -0.3513 38 1 6.7435 -3.8860 1.1112 39 1 6.1327 -4.3400 -0.4979 40 1 5.5289 -3.8135 -2.1686 41 1 4.1193 -3.2859 -4.0841 42 1 2.7582 -1.2399 -4.1199 43 1 2.8016 0.3210 -2.2490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241005548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:44 Heat of formation + Delta-G solvation = 4.576921 kcal Electronic energy + Delta-G solvation = -26070.626594 eV Core-core repulsion = 22623.495602 eV Total energy + Delta-G solvation = -3447.130992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49844 -40.27588 -38.14759 -37.35051 -35.55302 -34.78690 -31.58165 -31.17021 -30.96893 -30.64875 -28.35031 -27.26796 -26.37951 -24.20024 -23.82707 -23.05078 -22.42916 -20.88087 -19.19742 -18.54684 -18.24238 -17.62045 -17.18051 -16.78996 -16.37402 -16.26219 -15.53107 -15.27838 -15.00002 -14.87700 -14.82975 -14.36165 -14.25093 -14.14397 -13.83423 -13.58443 -13.47882 -13.23118 -12.90147 -12.77979 -12.75513 -12.74630 -12.44261 -12.34996 -11.98772 -11.79721 -11.76780 -11.63578 -11.59335 -11.12184 -10.89936 -10.51543 -9.47943 -9.44381 -8.95202 -8.60640 -8.40590 -6.23967 -0.34355 0.19350 0.80445 0.99151 1.26536 1.37335 1.50294 1.50448 2.16245 2.21048 2.68344 2.81047 3.26348 3.63663 3.74116 3.96981 3.99957 4.09676 4.18849 4.26007 4.27488 4.43524 4.45991 4.52955 4.56590 4.62585 4.68071 4.72895 4.77077 4.87354 4.91555 5.04458 5.14416 5.18148 5.23157 5.26284 5.32160 5.40755 5.41862 5.52749 5.57296 5.63184 5.72944 5.83736 5.87710 6.03963 6.07452 6.22908 6.24646 6.55588 6.80165 6.94212 7.07895 8.36128 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.004891 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.216621 B = 5722.878841 C = 6818.133045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.333 6.333 3 C 0.020 3.980 4 C -0.170 4.170 5 C -0.201 4.201 6 C 0.056 3.944 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.035 3.965 10 N -0.831 5.831 11 Si 0.979 3.021 12 H -0.264 1.264 13 H -0.270 1.270 14 H -0.257 1.257 15 C -0.134 4.134 16 C -0.071 4.071 17 C -0.025 4.025 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.107 4.107 22 C -0.067 4.067 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.103 4.103 27 C -0.053 4.053 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.285 0.715 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -14.264 -0.541 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.248 6.248 3 C -0.024 4.024 4 C -0.189 4.189 5 C -0.220 4.220 6 C 0.054 3.946 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.458 5.458 11 Si 0.800 3.200 12 H -0.189 1.189 13 H -0.195 1.195 14 H -0.180 1.180 15 C -0.153 4.153 16 C -0.072 4.072 17 C -0.025 4.025 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.067 4.067 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.121 4.121 27 C -0.053 4.053 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.154 0.846 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.197 -14.508 -0.689 14.526 hybrid contribution -0.122 1.717 0.194 1.732 sum -0.320 -12.791 -0.496 12.805 Atomic orbital electron populations 1.23060 0.78571 1.04106 1.01036 1.85906 1.21507 1.26918 1.90465 1.18642 0.90628 0.84081 1.09023 1.20656 0.99091 0.91992 1.07167 1.20832 0.94273 0.96415 1.10494 1.17833 0.91784 0.93713 0.91316 1.19674 1.00154 0.95046 1.38021 0.90554 1.26688 0.98561 1.00763 0.91852 1.69921 1.16922 1.35610 1.23305 0.85256 0.78001 0.77948 0.78836 1.18852 1.19491 1.18036 1.21163 0.98922 0.90147 1.05084 1.18059 0.90005 0.92438 1.06700 1.18973 0.96164 0.93128 0.94210 1.21274 0.97655 0.98285 0.97710 1.20827 0.99622 0.93618 0.99727 1.20112 0.97668 0.98352 0.92798 1.20846 0.98646 0.92779 1.04013 1.18224 0.97605 0.94371 0.96516 1.21372 0.99824 0.99546 0.92395 1.21166 0.96047 0.96868 0.99331 1.21107 1.00399 0.95062 0.98230 1.20968 0.97935 0.99282 0.93908 1.18208 0.97868 0.94778 0.94412 0.87073 0.93001 0.93160 0.85225 0.87617 0.90467 0.87632 0.86979 0.83513 0.90091 0.89967 0.89923 0.82238 0.82569 0.84608 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.80 113.37 1.11 1.92 16 2 O -0.33 -13.64 8.99 -89.00 -0.80 -14.44 16 3 C 0.02 0.95 5.53 23.04 0.13 1.08 16 4 C -0.17 -7.64 8.95 22.06 0.20 -7.44 16 5 C -0.20 -9.98 9.72 22.51 0.22 -9.76 16 6 C 0.06 3.08 5.57 -21.31 -0.12 2.96 16 7 C -0.50 -27.47 9.03 23.40 0.21 -27.25 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.04 1.83 5.13 85.22 0.44 2.26 16 10 N -0.83 -45.33 10.97 21.81 0.24 -45.09 16 11 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 15 C -0.13 -7.36 8.37 22.96 0.19 -7.16 16 16 C -0.07 -3.56 4.50 -20.00 -0.09 -3.65 16 17 C -0.02 -1.12 4.96 -19.81 -0.10 -1.22 16 18 C -0.13 -5.28 9.69 22.49 0.22 -5.07 16 19 C -0.12 -3.85 9.56 21.99 0.21 -3.64 16 20 C -0.09 -2.64 5.89 -19.77 -0.12 -2.75 16 21 C -0.11 -2.00 9.52 71.23 0.68 -1.32 16 22 C -0.07 -2.28 5.74 -21.31 -0.12 -2.40 16 23 C -0.11 -3.00 9.27 22.35 0.21 -2.80 16 24 C -0.12 -2.97 9.95 22.04 0.22 -2.75 16 25 C -0.13 -4.08 9.95 22.06 0.22 -3.86 16 26 C -0.10 -4.13 8.53 22.28 0.19 -3.94 16 27 C -0.05 -2.18 5.56 -21.15 -0.12 -2.30 16 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.44 7.64 -2.38 -0.02 1.42 16 30 H 0.05 1.41 7.66 -2.39 -0.02 1.39 16 31 H 0.13 4.84 6.26 -2.91 -0.02 4.82 16 32 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 33 H 0.28 14.23 8.30 -92.70 -0.77 13.46 16 34 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 39 H 0.08 1.28 6.40 -2.39 -0.02 1.26 16 40 H 0.16 2.91 6.34 -2.91 -0.02 2.89 16 41 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 43 H 0.10 4.36 6.35 -2.91 -0.02 4.34 16 Total: -1.00 -67.98 353.76 6.27 -61.70 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 1.03 Total: 35.45 kcal Atomic # 6 Polarization: -82.88 SS G_CDS: 3.77 Total: -79.10 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.24 Total: -45.09 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.80 Total: -14.44 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -67.98 6.27 -61.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241005548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.280 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds