Wall clock time and date at job start Tue Mar 31 2020 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35650 * 116.99478 * 2 1 4 4 C 1.37946 * 119.79285 * 359.97438 * 3 2 1 5 5 C 1.38449 * 121.61232 * 179.97438 * 4 3 2 6 6 C 1.39148 * 120.67522 * 0.02562 * 5 4 3 7 7 C 1.47407 * 120.57120 * 180.02562 * 6 5 4 8 8 C 1.40249 * 119.91077 * 129.97490 * 7 6 5 9 9 C 1.36065 * 120.09829 * 179.76495 * 8 7 6 10 10 C 1.41039 * 119.89983 * 0.53195 * 9 8 7 11 11 C 1.40871 * 120.09122 * 179.73911 * 10 9 8 12 12 H 1.08004 * 119.99862 * 154.18469 * 11 10 9 13 13 C 1.39903 * 120.00222 * 334.18191 * 11 10 9 14 14 N 1.30862 * 120.00404 * 334.57044 * 13 11 10 15 15 Si 1.86802 * 119.99841 * 154.56666 * 13 11 10 16 16 H 1.48504 * 109.47188 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47166 * 300.00057 * 15 13 11 18 18 H 1.48501 * 109.47389 * 60.00336 * 15 13 11 19 19 C 1.41005 * 119.81328 * 359.47039 * 10 9 8 20 20 C 1.50703 * 120.04958 * 180.22410 * 19 10 9 21 21 C 1.36095 * 119.90330 * 0.24957 * 19 10 9 22 22 C 1.46176 * 118.86765 * 0.27166 * 6 5 4 23 23 C 1.39982 * 121.41669 * 180.38794 * 22 6 5 24 24 C 1.36408 * 119.63132 * 179.65791 * 23 22 6 25 25 C 1.39202 * 120.88728 * 359.65714 * 24 23 22 26 26 C 1.36278 * 120.96036 * 0.02562 * 25 24 23 27 27 C 1.40382 * 119.64620 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47373 * 299.99887 * 1 2 3 29 29 H 1.09003 * 109.47000 * 60.00156 * 1 2 3 30 30 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.18814 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.66176 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94901 * 0.02562 * 8 7 6 34 34 H 1.08006 * 120.04757 * 180.25392 * 9 8 7 35 35 H 0.97003 * 119.99100 * 354.15396 * 14 13 11 36 36 H 1.09001 * 109.46597 * 89.99684 * 20 19 10 37 37 H 1.08997 * 109.47592 * 209.99613 * 20 19 10 38 38 H 1.09001 * 109.47051 * 330.00687 * 20 19 10 39 39 H 1.08001 * 119.95710 * 180.02562 * 21 19 10 40 40 H 1.08003 * 120.18550 * 359.31357 * 23 22 6 41 41 H 1.07994 * 119.55960 * 179.67129 * 24 23 22 42 42 H 1.07998 * 119.51911 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.17482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2891 2.3628 -0.0005 5 6 1.8781 3.6158 0.0000 6 6 3.2632 3.7492 0.0005 7 6 3.8878 5.0843 0.0016 8 6 4.8913 5.3862 0.9338 9 6 5.4738 6.6159 0.9351 10 6 5.0592 7.5912 0.0045 11 6 5.6557 8.8674 0.0059 12 1 5.6734 9.4562 -0.8993 13 6 6.2251 9.3722 1.1799 14 7 5.8046 8.9503 2.3451 15 14 7.5859 10.6484 1.0842 16 1 8.0161 11.0172 2.4568 17 1 8.7404 10.0861 0.3384 18 1 7.0833 11.8561 0.3812 19 6 4.0499 7.2835 -0.9309 20 6 3.6064 8.3201 -1.9309 21 6 3.4766 6.0492 -0.9290 22 6 4.0883 2.5426 -0.0055 23 6 5.4863 2.6146 0.0028 24 6 6.2208 1.4652 0.0038 25 6 5.5990 0.2198 0.0039 26 6 4.2403 0.1146 0.0023 27 6 3.4538 1.2774 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2119 2.2870 -0.0014 32 1 1.2561 4.4987 -0.0001 33 1 5.2051 4.6401 1.6488 34 1 6.2494 6.8461 1.6506 35 1 5.0424 8.3527 2.3982 36 1 4.2132 8.2378 -2.8326 37 1 2.5583 8.1575 -2.1821 38 1 3.7271 9.3145 -1.5012 39 1 2.7038 5.8125 -1.6453 40 1 5.9806 3.5749 0.0028 41 1 7.2992 1.5221 0.0049 42 1 6.2021 -0.6761 0.0051 43 1 3.7712 -0.8582 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241977905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:52 Heat of formation + Delta-G solvation = 6.524681 kcal Electronic energy + Delta-G solvation = -25299.145730 eV Core-core repulsion = 21852.099199 eV Total energy + Delta-G solvation = -3447.046531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.34550 -38.55617 -37.91572 -35.64478 -34.03624 -32.44982 -31.13911 -30.11889 -29.79026 -28.03077 -27.21850 -26.11257 -24.71979 -23.05050 -22.57186 -21.69780 -20.37159 -19.58898 -17.94446 -17.82715 -17.10343 -16.45990 -15.71120 -15.36480 -14.92677 -14.56534 -14.53528 -13.99582 -13.90495 -13.65956 -13.12217 -13.02071 -12.87191 -12.71601 -12.60296 -12.23986 -11.98115 -11.75728 -11.71077 -11.56479 -11.32922 -11.29499 -11.08393 -10.80036 -10.54576 -10.50328 -10.35627 -10.29521 -9.65233 -9.48793 -9.18415 -9.06088 -8.39971 -7.78367 -7.68437 -7.31007 -6.83501 -4.51051 0.84780 1.30780 2.19801 2.71123 2.84369 3.08708 3.15863 3.28668 3.30745 3.37579 3.91568 4.33154 4.50330 4.90578 4.94926 5.07996 5.09153 5.14830 5.26539 5.35832 5.38964 5.40794 5.54819 5.74598 5.78650 5.85089 6.03835 6.09356 6.23493 6.27323 6.33915 6.40394 6.51413 6.55295 6.55591 6.72971 6.75182 6.81410 6.87097 6.99515 7.05466 7.13040 7.23728 7.32629 7.53423 7.63823 7.68382 7.79783 7.86873 8.06990 8.20976 8.63769 8.76041 9.89638 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003342 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.435943 B = 8376.912057 C = 9231.738173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.100 3.900 4 C -0.197 4.197 5 C -0.114 4.114 6 C 0.005 3.995 7 C -0.208 4.208 8 C -0.060 4.060 9 C -0.224 4.224 10 C 0.106 3.894 11 C -0.502 4.502 12 H 0.081 0.919 13 C 0.037 3.963 14 N -0.784 5.784 15 Si 1.063 2.937 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.204 4.204 20 C -0.084 4.084 21 C -0.050 4.050 22 C -0.028 4.028 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.100 4.100 27 C -0.057 4.057 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.302 0.698 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -11.694 -3.212 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.055 3.945 4 C -0.216 4.216 5 C -0.132 4.132 6 C 0.004 3.996 7 C -0.210 4.210 8 C -0.078 4.078 9 C -0.243 4.243 10 C 0.103 3.897 11 C -0.528 4.528 12 H 0.099 0.901 13 C -0.187 4.187 14 N -0.406 5.406 15 Si 0.887 3.113 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.205 4.205 20 C -0.141 4.141 21 C -0.069 4.069 22 C -0.028 4.028 23 C -0.111 4.111 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.118 4.118 27 C -0.057 4.057 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.156 0.844 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.723 -11.010 -2.222 11.833 hybrid contribution -1.475 -0.870 -0.885 1.928 sum -5.198 -11.880 -3.108 13.335 Atomic orbital electron populations 1.22990 0.78892 1.03369 1.01326 1.85911 1.20869 1.27336 1.89013 1.18804 0.91042 0.84034 1.00598 1.20830 0.99272 0.92241 1.09215 1.20894 0.94064 0.96081 1.02140 1.19957 0.91699 0.91513 0.96389 1.17804 1.06320 0.92456 1.04371 1.20430 0.94947 0.95981 0.96440 1.20811 1.04286 0.93842 1.05324 1.17600 0.88867 0.92881 0.90389 1.20617 1.31635 1.01353 0.99228 0.90080 1.27104 0.99999 0.99990 0.91560 1.70466 1.20211 1.23159 1.26773 0.83653 0.75277 0.75100 0.77317 1.19740 1.19836 1.19984 1.19348 1.01711 0.95440 1.03978 1.20397 0.98212 0.98609 0.96889 1.20243 0.97741 0.92501 0.96381 1.18952 0.93411 0.91069 0.99355 1.21242 0.92659 0.99412 0.97779 1.20888 0.99900 0.92419 1.01230 1.20760 0.94602 0.97494 1.01680 1.20849 0.93647 0.97348 0.99950 1.17307 0.89875 0.93599 1.04914 0.92808 0.92824 0.88635 0.86246 0.86046 0.89025 0.87607 0.88414 0.93963 0.94288 0.92089 0.89156 0.84385 0.86244 0.86452 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.79 101.05 0.99 1.27 16 2 O -0.32 -4.37 9.67 -18.65 -0.18 -4.55 16 3 C 0.10 1.59 6.70 -38.62 -0.26 1.33 16 4 C -0.20 -3.03 8.96 -39.61 -0.35 -3.39 16 5 C -0.11 -1.99 9.49 -39.17 -0.37 -2.36 16 6 C 0.00 0.09 5.63 -102.64 -0.58 -0.49 16 7 C -0.21 -4.49 5.14 -104.67 -0.54 -5.03 16 8 C -0.06 -1.33 7.62 -39.61 -0.30 -1.63 16 9 C -0.22 -5.45 7.88 -39.30 -0.31 -5.76 16 10 C 0.11 2.64 5.29 -106.79 -0.57 2.08 16 11 C -0.50 -12.48 8.03 -37.96 -0.30 -12.78 16 12 H 0.08 1.95 6.91 -52.48 -0.36 1.59 16 13 C 0.04 0.89 4.92 -17.34 -0.09 0.80 16 14 N -0.78 -19.90 12.31 55.55 0.68 -19.22 16 15 Si 1.06 20.49 30.00 -169.99 -5.10 15.39 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 19 C -0.20 -4.71 5.90 -104.34 -0.62 -5.32 16 20 C -0.08 -1.69 9.39 36.01 0.34 -1.36 16 21 C -0.05 -1.10 9.08 -39.61 -0.36 -1.46 16 22 C -0.03 -0.51 5.87 -104.80 -0.62 -1.13 16 23 C -0.09 -1.63 8.69 -39.59 -0.34 -1.97 16 24 C -0.13 -1.87 9.96 -39.88 -0.40 -2.27 16 25 C -0.13 -1.74 9.95 -39.93 -0.40 -2.14 16 26 C -0.10 -1.49 9.56 -39.48 -0.38 -1.87 16 27 C -0.06 -0.97 5.75 -106.76 -0.61 -1.58 16 28 H 0.05 0.47 7.63 -51.93 -0.40 0.07 16 29 H 0.05 0.46 7.63 -51.93 -0.40 0.07 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.12 1.49 6.15 -52.49 -0.32 1.17 16 32 H 0.12 2.02 8.03 -52.49 -0.42 1.60 16 33 H 0.09 1.93 7.31 -52.48 -0.38 1.54 16 34 H 0.11 2.67 6.50 -52.48 -0.34 2.33 16 35 H 0.30 7.91 6.70 -40.82 -0.27 7.63 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.06 1.25 6.76 -51.93 -0.35 0.90 16 39 H 0.09 1.80 8.04 -52.49 -0.42 1.38 16 40 H 0.14 2.54 5.75 -52.48 -0.30 2.24 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.64 7.60 -52.49 -0.40 1.24 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -27.16 352.38 -10.62 -37.78 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.28 Total: 10.34 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: -6.06 Total: -45.06 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.68 Total: -19.22 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.18 Total: -4.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.10 Total: 15.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.16 -10.62 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241977905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.309 kcal (2) G-P(sol) polarization free energy of solvation -27.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds