Wall clock time and date at job start Tue Mar 31 2020 12:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35650 * 116.99478 * 2 1 4 4 C 1.37946 * 119.79285 * 359.97438 * 3 2 1 5 5 C 1.38449 * 121.61232 * 179.97438 * 4 3 2 6 6 C 1.39148 * 120.67522 * 0.02562 * 5 4 3 7 7 C 1.47407 * 120.57120 * 180.02562 * 6 5 4 8 8 C 1.40249 * 119.91077 * 129.97490 * 7 6 5 9 9 C 1.36065 * 120.09829 * 179.76495 * 8 7 6 10 10 C 1.41039 * 119.89983 * 0.53195 * 9 8 7 11 11 C 1.40871 * 120.09122 * 179.73911 * 10 9 8 12 12 H 1.08004 * 119.99862 * 154.18469 * 11 10 9 13 13 C 1.39903 * 120.00222 * 334.18191 * 11 10 9 14 14 N 1.30862 * 120.00404 * 334.57044 * 13 11 10 15 15 Si 1.86802 * 119.99841 * 154.56666 * 13 11 10 16 16 H 1.48504 * 109.47188 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47166 * 300.00057 * 15 13 11 18 18 H 1.48501 * 109.47389 * 60.00336 * 15 13 11 19 19 C 1.41005 * 119.81328 * 359.47039 * 10 9 8 20 20 C 1.50703 * 120.04958 * 180.22410 * 19 10 9 21 21 C 1.36095 * 119.90330 * 0.24957 * 19 10 9 22 22 C 1.46176 * 118.86765 * 0.27166 * 6 5 4 23 23 C 1.39982 * 121.41669 * 180.38794 * 22 6 5 24 24 C 1.36408 * 119.63132 * 179.65791 * 23 22 6 25 25 C 1.39202 * 120.88728 * 359.65714 * 24 23 22 26 26 C 1.36278 * 120.96036 * 0.02562 * 25 24 23 27 27 C 1.40382 * 119.64620 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47373 * 299.99887 * 1 2 3 29 29 H 1.09003 * 109.47000 * 60.00156 * 1 2 3 30 30 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.18814 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.66176 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94901 * 0.02562 * 8 7 6 34 34 H 1.08006 * 120.04757 * 180.25392 * 9 8 7 35 35 H 0.97003 * 119.99100 * 354.15396 * 14 13 11 36 36 H 1.09001 * 109.46597 * 89.99684 * 20 19 10 37 37 H 1.08997 * 109.47592 * 209.99613 * 20 19 10 38 38 H 1.09001 * 109.47051 * 330.00687 * 20 19 10 39 39 H 1.08001 * 119.95710 * 180.02562 * 21 19 10 40 40 H 1.08003 * 120.18550 * 359.31357 * 23 22 6 41 41 H 1.07994 * 119.55960 * 179.67129 * 24 23 22 42 42 H 1.07998 * 119.51911 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.17482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2891 2.3628 -0.0005 5 6 1.8781 3.6158 0.0000 6 6 3.2632 3.7492 0.0005 7 6 3.8878 5.0843 0.0016 8 6 4.8913 5.3862 0.9338 9 6 5.4738 6.6159 0.9351 10 6 5.0592 7.5912 0.0045 11 6 5.6557 8.8674 0.0059 12 1 5.6734 9.4562 -0.8993 13 6 6.2251 9.3722 1.1799 14 7 5.8046 8.9503 2.3451 15 14 7.5859 10.6484 1.0842 16 1 8.0161 11.0172 2.4568 17 1 8.7404 10.0861 0.3384 18 1 7.0833 11.8561 0.3812 19 6 4.0499 7.2835 -0.9309 20 6 3.6064 8.3201 -1.9309 21 6 3.4766 6.0492 -0.9290 22 6 4.0883 2.5426 -0.0055 23 6 5.4863 2.6146 0.0028 24 6 6.2208 1.4652 0.0038 25 6 5.5990 0.2198 0.0039 26 6 4.2403 0.1146 0.0023 27 6 3.4538 1.2774 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2119 2.2870 -0.0014 32 1 1.2561 4.4987 -0.0001 33 1 5.2051 4.6401 1.6488 34 1 6.2494 6.8461 1.6506 35 1 5.0424 8.3527 2.3982 36 1 4.2132 8.2378 -2.8326 37 1 2.5583 8.1575 -2.1821 38 1 3.7271 9.3145 -1.5012 39 1 2.7038 5.8125 -1.6453 40 1 5.9806 3.5749 0.0028 41 1 7.2992 1.5221 0.0049 42 1 6.2021 -0.6761 0.0051 43 1 3.7712 -0.8582 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241977905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:51 Heat of formation + Delta-G solvation = -3.688992 kcal Electronic energy + Delta-G solvation = -25299.588628 eV Core-core repulsion = 21852.099199 eV Total energy + Delta-G solvation = -3447.489429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.57424 -40.01752 -39.31149 -36.99924 -35.70276 -33.99023 -32.63419 -31.39191 -31.34243 -29.37448 -28.32292 -27.71967 -26.37764 -24.34136 -23.82722 -23.22236 -22.03657 -21.12844 -19.70051 -18.98416 -18.34019 -17.66544 -16.91724 -16.68344 -16.33503 -16.21405 -15.92013 -15.50067 -15.24973 -14.94184 -14.59582 -14.32630 -14.30746 -14.11642 -13.96739 -13.78201 -13.60323 -13.39011 -12.90481 -12.88199 -12.66527 -12.57051 -12.50284 -12.33308 -11.98996 -11.88835 -11.71270 -11.66194 -11.38932 -11.19115 -10.86857 -10.39124 -9.64198 -9.52882 -9.46448 -9.12738 -8.24475 -6.38046 -0.43552 0.05985 0.70585 1.00385 1.18704 1.50891 1.64051 1.79195 2.08116 2.29004 2.32022 2.64773 3.13147 3.50573 3.74512 3.84716 3.92160 4.08481 4.12301 4.24125 4.30418 4.33673 4.40424 4.43890 4.51354 4.54617 4.60376 4.65948 4.74548 4.79937 4.94908 4.97858 5.05080 5.12422 5.14790 5.20333 5.24932 5.31895 5.46570 5.47299 5.51872 5.61030 5.75800 5.77581 5.86589 6.01079 6.02495 6.11344 6.24944 6.39023 6.43338 6.80470 6.94823 8.00897 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003342 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.435943 B = 8376.912057 C = 9231.738173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.118 3.882 4 C -0.209 4.209 5 C -0.101 4.101 6 C -0.045 4.045 7 C -0.186 4.186 8 C -0.066 4.066 9 C -0.239 4.239 10 C 0.077 3.923 11 C -0.535 4.535 12 H 0.081 0.919 13 C 0.003 3.997 14 N -0.812 5.812 15 Si 1.113 2.887 16 H -0.274 1.274 17 H -0.264 1.264 18 H -0.255 1.255 19 C -0.215 4.215 20 C -0.079 4.079 21 C -0.063 4.063 22 C -0.037 4.037 23 C -0.128 4.128 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.097 4.097 27 C -0.083 4.083 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.284 0.716 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -14.612 -4.288 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.073 3.927 4 C -0.228 4.228 5 C -0.119 4.119 6 C -0.045 4.045 7 C -0.187 4.187 8 C -0.084 4.084 9 C -0.258 4.258 10 C 0.075 3.925 11 C -0.562 4.562 12 H 0.099 0.901 13 C -0.214 4.214 14 N -0.435 5.435 15 Si 0.930 3.070 16 H -0.198 1.198 17 H -0.189 1.189 18 H -0.179 1.179 19 C -0.216 4.216 20 C -0.136 4.136 21 C -0.081 4.081 22 C -0.037 4.037 23 C -0.146 4.146 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.174 0.826 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.894 -13.948 -3.314 15.148 hybrid contribution -1.321 -0.438 -0.611 1.520 sum -6.215 -14.385 -3.925 16.155 Atomic orbital electron populations 1.23382 0.76324 1.05752 1.02234 1.85917 1.23429 1.26032 1.88224 1.18944 0.90922 0.85036 0.97820 1.21045 1.00927 0.91142 1.09697 1.21055 0.93267 0.97415 1.00131 1.19908 0.92852 0.90791 1.00958 1.18103 1.04505 0.93583 1.02495 1.20517 0.95529 0.95345 0.97057 1.20755 1.04666 0.94810 1.05586 1.17915 0.89914 0.93338 0.91370 1.20728 1.34005 1.01842 0.99657 0.90098 1.28429 1.01154 1.00957 0.90849 1.70579 1.20661 1.24722 1.27527 0.83051 0.72949 0.73540 0.77415 1.19835 1.18917 1.17904 1.19782 1.01032 0.96762 1.04030 1.20377 0.99757 0.97096 0.96332 1.20521 0.98367 0.92279 0.96935 1.19033 0.93739 0.91421 0.99557 1.21182 0.92828 0.99667 1.00888 1.21239 1.01119 0.92075 0.98587 1.21161 0.94646 0.98234 1.00115 1.21173 0.94147 0.97447 0.98682 1.17594 0.91016 0.93727 1.06007 0.91939 0.91784 0.85686 0.83054 0.85603 0.88494 0.89543 0.90374 0.92855 0.91929 0.93074 0.87026 0.86584 0.83869 0.82582 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.79 113.37 1.11 1.36 16 2 O -0.32 -7.65 9.67 -89.65 -0.87 -8.52 16 3 C 0.12 3.46 6.70 22.90 0.15 3.61 16 4 C -0.21 -5.94 8.96 22.25 0.20 -5.74 16 5 C -0.10 -3.42 9.49 22.54 0.21 -3.20 16 6 C -0.04 -1.76 5.63 -18.58 -0.10 -1.86 16 7 C -0.19 -8.27 5.14 -19.89 -0.10 -8.37 16 8 C -0.07 -3.14 7.62 22.25 0.17 -2.97 16 9 C -0.24 -12.50 7.88 22.45 0.18 -12.33 16 10 C 0.08 4.09 5.29 -21.27 -0.11 3.98 16 11 C -0.53 -28.02 8.03 23.32 0.19 -27.83 16 12 H 0.08 4.08 6.91 -2.91 -0.02 4.06 16 13 C 0.00 0.15 4.92 85.24 0.42 0.57 16 14 N -0.81 -43.82 12.31 21.82 0.27 -43.55 16 15 Si 1.11 42.51 30.00 68.60 2.06 44.57 16 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 19 C -0.21 -10.23 5.90 -19.68 -0.12 -10.35 16 20 C -0.08 -3.18 9.39 71.24 0.67 -2.52 16 21 C -0.06 -2.79 9.08 22.25 0.20 -2.59 16 22 C -0.04 -1.38 5.87 -19.98 -0.12 -1.49 16 23 C -0.13 -4.51 8.69 22.27 0.19 -4.31 16 24 C -0.11 -3.13 9.96 22.07 0.22 -2.91 16 25 C -0.12 -2.97 9.95 22.04 0.22 -2.75 16 26 C -0.10 -2.57 9.56 22.33 0.21 -2.36 16 27 C -0.08 -2.68 5.75 -21.25 -0.12 -2.80 16 28 H 0.06 0.83 7.63 -2.39 -0.02 0.82 16 29 H 0.06 0.83 7.63 -2.39 -0.02 0.81 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.15 3.22 6.15 -2.91 -0.02 3.20 16 32 H 0.13 4.05 8.03 -2.91 -0.02 4.03 16 33 H 0.10 4.37 7.31 -2.91 -0.02 4.35 16 34 H 0.09 4.76 6.50 -2.91 -0.02 4.74 16 35 H 0.28 16.06 6.70 -92.71 -0.62 15.44 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.05 2.14 6.76 -2.39 -0.02 2.12 16 39 H 0.11 4.39 8.04 -2.91 -0.02 4.37 16 40 H 0.12 4.53 5.75 -2.91 -0.02 4.51 16 41 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.15 3.23 7.60 -2.91 -0.02 3.20 16 Total: -1.00 -62.80 352.38 6.31 -56.49 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 1.18 Total: 35.89 kcal Atomic # 6 Polarization: -88.55 SS G_CDS: 3.67 Total: -84.88 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.27 Total: -43.55 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.87 Total: -8.52 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.06 Total: 44.57 kcal Total: -62.80 6.31 -56.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241977905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.802 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds