Wall clock time and date at job start Tue Mar 31 2020 12:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35647 * 117.00194 * 2 1 4 4 C 1.37948 * 119.78735 * 0.02562 * 3 2 1 5 5 C 1.38453 * 121.61305 * 180.02562 * 4 3 2 6 6 C 1.39153 * 120.66894 * 359.97410 * 5 4 3 7 7 C 1.47413 * 120.56319 * 179.97438 * 6 5 4 8 8 C 1.40250 * 119.90537 * 65.22091 * 7 6 5 9 9 C 1.36071 * 120.09471 * 180.27714 * 8 7 6 10 10 C 1.41044 * 119.89858 * 359.50259 * 9 8 7 11 11 C 1.40869 * 120.08958 * 180.27626 * 10 9 8 12 12 H 1.08004 * 119.99820 * 150.06303 * 11 10 9 13 13 C 1.39910 * 120.00188 * 330.05981 * 11 10 9 14 14 N 1.30860 * 119.99977 * 161.73269 * 13 11 10 15 15 Si 1.86803 * 119.99784 * 341.73207 * 13 11 10 16 16 H 1.48499 * 109.47068 * 95.41693 * 15 13 11 17 17 H 1.48503 * 109.46877 * 215.41652 * 15 13 11 18 18 H 1.48494 * 109.47191 * 335.41784 * 15 13 11 19 19 C 1.41009 * 119.81685 * 0.25150 * 10 9 8 20 20 C 1.36097 * 119.89811 * 0.02562 * 19 10 9 21 21 C 1.50706 * 119.94855 * 180.02562 * 20 19 10 22 22 C 1.46178 * 118.87197 * 0.25413 * 6 5 4 23 23 C 1.39980 * 121.41229 * 180.36698 * 22 6 5 24 24 C 1.36413 * 119.62308 * 179.70698 * 23 22 6 25 25 C 1.39194 * 120.88877 * 359.71017 * 24 23 22 26 26 C 1.36282 * 120.96330 * 359.97438 * 25 24 23 27 27 C 1.40375 * 119.64402 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47203 * 299.99924 * 1 2 3 29 29 H 1.09001 * 109.47233 * 60.00110 * 1 2 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.19151 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.66453 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.95197 * 0.03517 * 8 7 6 34 34 H 1.07999 * 120.04884 * 179.78320 * 9 8 7 35 35 H 0.96998 * 119.99618 * 180.02562 * 14 13 11 36 36 H 1.07994 * 120.04947 * 179.97438 * 19 10 9 37 37 H 1.08998 * 109.46839 * 89.99817 * 21 20 19 38 38 H 1.09002 * 109.46933 * 209.99495 * 21 20 19 39 39 H 1.08991 * 109.47267 * 329.99873 * 21 20 19 40 40 H 1.08000 * 120.18990 * 359.39360 * 23 22 6 41 41 H 1.07999 * 119.55315 * 179.73881 * 24 23 22 42 42 H 1.08001 * 119.51789 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.17295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2893 2.3628 0.0005 5 6 1.8782 3.6158 0.0000 6 6 3.2634 3.7490 -0.0005 7 6 3.8880 5.0842 -0.0016 8 6 3.7231 5.9342 1.1017 9 6 4.2933 7.1697 1.1024 10 6 5.0597 7.5909 -0.0042 11 6 5.6567 8.8669 -0.0053 12 1 6.5788 9.0312 -0.5430 13 6 5.0550 9.9213 0.6902 14 7 5.7523 10.9855 0.9964 15 14 3.2562 9.8100 1.1816 16 1 3.1542 9.3118 2.5768 17 1 2.6338 11.1552 1.0896 18 1 2.5508 8.8747 0.2692 19 6 5.2272 6.7311 -1.1092 20 6 4.6488 5.4992 -1.1039 21 6 4.8275 4.5791 -2.2840 22 6 4.0885 2.5423 -0.0062 23 6 5.4864 2.6144 0.0006 24 6 6.2208 1.4648 0.0011 25 6 5.5990 0.2195 0.0008 26 6 4.2402 0.1144 0.0006 27 6 3.4538 1.2772 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2119 2.2871 0.0005 32 1 1.2563 4.4987 0.0001 33 1 3.1395 5.6092 1.9503 34 1 4.1629 7.8250 1.9509 35 1 5.3352 11.7163 1.4789 36 1 5.8130 7.0499 -1.9586 37 1 5.7140 3.9631 -2.1334 38 1 3.9515 3.9376 -2.3806 39 1 4.9463 5.1709 -3.1915 40 1 5.9807 3.5746 0.0005 41 1 7.2993 1.5217 0.0021 42 1 6.2020 -0.6764 0.0015 43 1 3.7711 -0.8584 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241978120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:57 Heat of formation + Delta-G solvation = 15.568255 kcal Electronic energy + Delta-G solvation = -25623.282179 eV Core-core repulsion = 22176.627807 eV Total energy + Delta-G solvation = -3446.654372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.45568 -38.68303 -37.89986 -35.60374 -33.97961 -32.33288 -31.49842 -30.41512 -30.13638 -28.30943 -27.37818 -26.24598 -24.80789 -22.99403 -22.63118 -21.45854 -20.67055 -19.83697 -17.91372 -17.43479 -17.04041 -16.53411 -15.88355 -15.77879 -15.07950 -14.97209 -14.30450 -14.11119 -13.86313 -13.57554 -13.23447 -13.08097 -13.04921 -12.83236 -12.79162 -12.50188 -12.27550 -11.83585 -11.77701 -11.62414 -11.53746 -11.39499 -10.90893 -10.80071 -10.70380 -10.58597 -10.43331 -10.16784 -9.86250 -9.63205 -9.18735 -9.14242 -8.46003 -7.77090 -7.56631 -7.05697 -7.00745 -4.54512 0.79191 1.24508 2.18242 2.53415 2.68680 3.06267 3.17597 3.23142 3.24003 3.28806 3.91998 4.29589 4.40285 4.84150 4.88978 5.02826 5.04817 5.08842 5.20887 5.30481 5.33224 5.34170 5.48544 5.68421 5.70901 5.76424 5.85501 5.88130 6.11705 6.16731 6.22753 6.29026 6.33667 6.46498 6.48524 6.52055 6.66006 6.69673 6.77023 6.83670 6.88351 7.04636 7.11474 7.17675 7.42247 7.46618 7.64268 7.76316 7.83651 8.05132 8.26699 8.59737 8.71463 9.95786 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003780 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.591664 B = 7406.383043 C = 8366.466700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.110 3.890 4 C -0.203 4.203 5 C -0.102 4.102 6 C 0.000 4.000 7 C -0.200 4.200 8 C -0.048 4.048 9 C -0.245 4.245 10 C 0.101 3.899 11 C -0.438 4.438 12 H 0.092 0.908 13 C 0.083 3.917 14 N -0.801 5.801 15 Si 0.914 3.086 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.243 1.243 19 C -0.211 4.211 20 C -0.027 4.027 21 C -0.110 4.110 22 C -0.021 4.021 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.098 4.098 27 C -0.061 4.061 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.287 0.713 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 -17.148 -1.616 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.065 3.935 4 C -0.222 4.222 5 C -0.120 4.120 6 C 0.000 4.000 7 C -0.201 4.201 8 C -0.066 4.066 9 C -0.264 4.264 10 C 0.098 3.902 11 C -0.466 4.466 12 H 0.110 0.890 13 C -0.137 4.137 14 N -0.425 5.425 15 Si 0.740 3.260 16 H -0.196 1.196 17 H -0.218 1.218 18 H -0.166 1.166 19 C -0.230 4.230 20 C -0.028 4.028 21 C -0.167 4.167 22 C -0.021 4.021 23 C -0.107 4.107 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.116 4.116 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.732 -17.058 -1.534 18.402 hybrid contribution -1.033 0.377 0.396 1.169 sum -7.765 -16.681 -1.137 18.435 Atomic orbital electron populations 1.23007 0.78754 1.03468 1.01394 1.85919 1.20987 1.27319 1.88816 1.18863 0.91091 0.84062 0.99469 1.20852 0.99380 0.92219 1.09773 1.20990 0.94166 0.96127 1.00736 1.19860 0.91592 0.91450 0.97122 1.17711 1.10960 0.93600 0.97810 1.20358 0.97099 0.93508 0.95670 1.20661 1.09082 0.97112 0.99522 1.17760 0.89274 0.93265 0.89885 1.19493 1.08605 0.92542 1.25941 0.89014 1.26236 1.01046 0.94630 0.91758 1.69713 1.38205 1.06558 1.27984 0.86264 0.81979 0.77354 0.80377 1.19552 1.21833 1.16571 1.20537 1.08072 0.95531 0.98886 1.19186 0.95602 0.94262 0.93708 1.20827 1.01235 0.98398 0.96247 1.18977 0.93407 0.90958 0.98754 1.21123 0.92575 0.99222 0.97760 1.20903 0.99946 0.92414 1.00914 1.20760 0.94589 0.97529 1.01711 1.20855 0.93664 0.97350 0.99729 1.17319 0.89826 0.93679 1.05303 0.92746 0.92741 0.88565 0.86155 0.85932 0.88857 0.88218 0.90267 0.88094 0.92074 0.92659 0.92646 0.84588 0.86205 0.86433 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.79 101.05 0.99 1.24 16 2 O -0.32 -4.06 9.67 -18.64 -0.18 -4.24 16 3 C 0.11 1.63 6.70 -38.62 -0.26 1.37 16 4 C -0.20 -2.92 8.96 -39.61 -0.35 -3.27 16 5 C -0.10 -1.67 9.71 -39.16 -0.38 -2.05 16 6 C 0.00 0.00 4.24 -102.64 -0.44 -0.44 16 7 C -0.20 -4.05 4.61 -104.66 -0.48 -4.53 16 8 C -0.05 -1.03 9.67 -39.60 -0.38 -1.41 16 9 C -0.24 -5.76 7.09 -39.30 -0.28 -6.04 16 10 C 0.10 2.49 5.10 -106.79 -0.54 1.95 16 11 C -0.44 -11.52 9.54 -37.96 -0.36 -11.88 16 12 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 13 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 14 N -0.80 -20.86 13.93 55.55 0.77 -20.08 16 15 Si 0.91 20.43 24.51 -169.99 -4.17 16.27 16 16 H -0.27 -5.87 6.70 56.52 0.38 -5.49 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.24 -5.57 6.87 56.52 0.39 -5.18 16 19 C -0.21 -4.75 9.36 -39.30 -0.37 -5.12 16 20 C -0.03 -0.56 4.96 -104.65 -0.52 -1.08 16 21 C -0.11 -1.89 8.51 36.01 0.31 -1.58 16 22 C -0.02 -0.35 5.30 -104.80 -0.56 -0.91 16 23 C -0.09 -1.42 7.63 -39.59 -0.30 -1.73 16 24 C -0.12 -1.68 9.96 -39.88 -0.40 -2.07 16 25 C -0.13 -1.61 9.95 -39.93 -0.40 -2.01 16 26 C -0.10 -1.35 9.56 -39.48 -0.38 -1.73 16 27 C -0.06 -0.96 5.75 -106.76 -0.61 -1.58 16 28 H 0.05 0.43 7.63 -51.93 -0.40 0.04 16 29 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.39 6.15 -52.48 -0.32 1.07 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.10 2.35 4.73 -52.49 -0.25 2.11 16 35 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 38 H 0.05 0.94 6.92 -51.93 -0.36 0.58 16 39 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.14 2.32 6.21 -52.49 -0.33 2.00 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.52 7.60 -52.49 -0.40 1.12 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -27.69 347.02 -9.50 -37.19 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.35 Total: 6.46 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: -5.81 Total: -40.83 kcal Atomic # 7 Polarization: -20.86 SS G_CDS: 0.77 Total: -20.08 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.18 Total: -4.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.17 Total: 16.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.69 -9.50 -37.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241978120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds