Wall clock time and date at job start Tue Mar 31 2020 12:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35647 * 117.00194 * 2 1 4 4 C 1.37948 * 119.78735 * 0.02562 * 3 2 1 5 5 C 1.38453 * 121.61305 * 180.02562 * 4 3 2 6 6 C 1.39153 * 120.66894 * 359.97410 * 5 4 3 7 7 C 1.47413 * 120.56319 * 179.97438 * 6 5 4 8 8 C 1.40250 * 119.90537 * 65.22091 * 7 6 5 9 9 C 1.36071 * 120.09471 * 180.27714 * 8 7 6 10 10 C 1.41044 * 119.89858 * 359.50259 * 9 8 7 11 11 C 1.40869 * 120.08958 * 180.27626 * 10 9 8 12 12 H 1.08004 * 119.99820 * 150.06303 * 11 10 9 13 13 C 1.39910 * 120.00188 * 330.05981 * 11 10 9 14 14 N 1.30860 * 119.99977 * 161.73269 * 13 11 10 15 15 Si 1.86803 * 119.99784 * 341.73207 * 13 11 10 16 16 H 1.48499 * 109.47068 * 95.41693 * 15 13 11 17 17 H 1.48503 * 109.46877 * 215.41652 * 15 13 11 18 18 H 1.48494 * 109.47191 * 335.41784 * 15 13 11 19 19 C 1.41009 * 119.81685 * 0.25150 * 10 9 8 20 20 C 1.36097 * 119.89811 * 0.02562 * 19 10 9 21 21 C 1.50706 * 119.94855 * 180.02562 * 20 19 10 22 22 C 1.46178 * 118.87197 * 0.25413 * 6 5 4 23 23 C 1.39980 * 121.41229 * 180.36698 * 22 6 5 24 24 C 1.36413 * 119.62308 * 179.70698 * 23 22 6 25 25 C 1.39194 * 120.88877 * 359.71017 * 24 23 22 26 26 C 1.36282 * 120.96330 * 359.97438 * 25 24 23 27 27 C 1.40375 * 119.64402 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47203 * 299.99924 * 1 2 3 29 29 H 1.09001 * 109.47233 * 60.00110 * 1 2 3 30 30 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.19151 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.66453 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.95197 * 0.03517 * 8 7 6 34 34 H 1.07999 * 120.04884 * 179.78320 * 9 8 7 35 35 H 0.96998 * 119.99618 * 180.02562 * 14 13 11 36 36 H 1.07994 * 120.04947 * 179.97438 * 19 10 9 37 37 H 1.08998 * 109.46839 * 89.99817 * 21 20 19 38 38 H 1.09002 * 109.46933 * 209.99495 * 21 20 19 39 39 H 1.08991 * 109.47267 * 329.99873 * 21 20 19 40 40 H 1.08000 * 120.18990 * 359.39360 * 23 22 6 41 41 H 1.07999 * 119.55315 * 179.73881 * 24 23 22 42 42 H 1.08001 * 119.51789 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.17295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2893 2.3628 0.0005 5 6 1.8782 3.6158 0.0000 6 6 3.2634 3.7490 -0.0005 7 6 3.8880 5.0842 -0.0016 8 6 3.7231 5.9342 1.1017 9 6 4.2933 7.1697 1.1024 10 6 5.0597 7.5909 -0.0042 11 6 5.6567 8.8669 -0.0053 12 1 6.5788 9.0312 -0.5430 13 6 5.0550 9.9213 0.6902 14 7 5.7523 10.9855 0.9964 15 14 3.2562 9.8100 1.1816 16 1 3.1542 9.3118 2.5768 17 1 2.6338 11.1552 1.0896 18 1 2.5508 8.8747 0.2692 19 6 5.2272 6.7311 -1.1092 20 6 4.6488 5.4992 -1.1039 21 6 4.8275 4.5791 -2.2840 22 6 4.0885 2.5423 -0.0062 23 6 5.4864 2.6144 0.0006 24 6 6.2208 1.4648 0.0011 25 6 5.5990 0.2195 0.0008 26 6 4.2402 0.1144 0.0006 27 6 3.4538 1.2772 0.0002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2119 2.2871 0.0005 32 1 1.2563 4.4987 0.0001 33 1 3.1395 5.6092 1.9503 34 1 4.1629 7.8250 1.9509 35 1 5.3352 11.7163 1.4789 36 1 5.8130 7.0499 -1.9586 37 1 5.7140 3.9631 -2.1334 38 1 3.9515 3.9376 -2.3806 39 1 4.9463 5.1709 -3.1915 40 1 5.9807 3.5746 0.0005 41 1 7.2993 1.5217 0.0021 42 1 6.2020 -0.6764 0.0015 43 1 3.7711 -0.8584 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241978120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:56 Heat of formation + Delta-G solvation = 3.371026 kcal Electronic energy + Delta-G solvation = -25623.811090 eV Core-core repulsion = 22176.627807 eV Total energy + Delta-G solvation = -3447.183284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.58966 -40.04252 -39.22902 -36.85958 -35.68535 -33.87830 -32.96746 -31.89386 -31.28059 -29.58668 -28.28320 -27.88156 -26.35283 -24.16878 -23.75182 -22.94150 -22.36743 -21.33381 -18.97618 -18.95677 -18.50205 -17.62725 -17.50674 -16.67967 -16.63926 -15.97934 -15.91447 -15.34703 -15.27229 -15.04033 -14.78672 -14.49083 -14.21180 -14.13236 -14.02955 -13.93551 -13.68622 -13.47033 -13.02914 -12.98538 -12.62897 -12.57148 -12.51026 -12.35776 -12.10360 -11.95232 -11.72878 -11.64018 -11.49103 -11.35689 -10.98049 -10.29407 -9.58780 -9.51712 -9.25198 -8.94604 -8.26338 -6.49017 -0.37323 0.11337 0.66028 0.90342 1.13714 1.25363 1.39406 1.47354 2.09533 2.11215 2.31453 2.54207 3.16675 3.45179 3.78521 3.87349 3.95367 4.12058 4.16882 4.22463 4.25502 4.30384 4.42497 4.46297 4.56023 4.58790 4.59119 4.66807 4.72473 4.77378 4.85598 4.98699 5.01635 5.05900 5.10726 5.17365 5.20002 5.32396 5.38142 5.49703 5.54680 5.64245 5.67759 5.81555 5.91390 5.92907 6.06510 6.09707 6.23133 6.38750 6.45461 6.72523 6.82692 8.13425 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003780 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.591664 B = 7406.383043 C = 8366.466700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.125 3.875 4 C -0.214 4.214 5 C -0.092 4.092 6 C -0.044 4.044 7 C -0.168 4.168 8 C -0.061 4.061 9 C -0.253 4.253 10 C 0.083 3.917 11 C -0.479 4.479 12 H 0.059 0.941 13 C 0.050 3.950 14 N -0.845 5.845 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.276 1.276 18 H -0.254 1.254 19 C -0.221 4.221 20 C -0.031 4.031 21 C -0.102 4.102 22 C -0.025 4.025 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.096 4.096 27 C -0.085 4.085 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.295 0.705 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 -21.621 -1.675 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.079 3.921 4 C -0.233 4.233 5 C -0.110 4.110 6 C -0.044 4.044 7 C -0.169 4.169 8 C -0.079 4.079 9 C -0.272 4.272 10 C 0.080 3.920 11 C -0.508 4.508 12 H 0.077 0.923 13 C -0.165 4.165 14 N -0.470 5.470 15 Si 0.788 3.212 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.178 1.178 19 C -0.241 4.241 20 C -0.031 4.031 21 C -0.158 4.158 22 C -0.026 4.026 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.171 0.829 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.878 -21.544 -1.593 23.356 hybrid contribution -0.445 1.246 0.348 1.368 sum -9.323 -20.298 -1.246 22.371 Atomic orbital electron populations 1.23374 0.76357 1.05694 1.02248 1.85923 1.23390 1.26198 1.88101 1.18999 0.91036 0.84945 0.97072 1.21029 1.00887 0.91185 1.10189 1.21103 0.93475 0.97308 0.99160 1.19718 0.92540 0.90533 1.01642 1.18080 1.08084 0.94320 0.96424 1.20652 0.97333 0.92986 0.96906 1.20727 1.09375 0.98050 0.99090 1.17878 0.90054 0.93045 0.91001 1.19427 1.08827 0.94267 1.28272 0.92318 1.26822 1.03997 0.94102 0.91614 1.69736 1.39608 1.07599 1.30104 0.85491 0.77935 0.77616 0.80111 1.18507 1.20283 1.17770 1.20709 1.08465 0.96334 0.98560 1.19553 0.94642 0.93844 0.95035 1.20784 1.02009 0.97939 0.95069 1.18966 0.93619 0.91035 0.98939 1.21040 0.92613 0.99390 1.00601 1.21231 1.01128 0.92056 0.98418 1.21133 0.94592 0.98297 1.00206 1.21143 0.94161 0.97430 0.98681 1.17577 0.90807 0.93847 1.06260 0.91878 0.91812 0.85829 0.83285 0.85734 0.86857 0.88645 0.89482 0.88010 0.90758 0.92161 0.91577 0.86610 0.83932 0.82931 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.79 113.37 1.11 1.33 16 2 O -0.32 -6.94 9.67 -89.61 -0.87 -7.80 16 3 C 0.13 3.28 6.70 22.89 0.15 3.43 16 4 C -0.21 -5.46 8.96 22.25 0.20 -5.26 16 5 C -0.09 -2.82 9.71 22.54 0.22 -2.60 16 6 C -0.04 -1.53 4.24 -18.58 -0.08 -1.61 16 7 C -0.17 -6.74 4.61 -19.89 -0.09 -6.84 16 8 C -0.06 -2.60 9.67 22.25 0.22 -2.39 16 9 C -0.25 -12.22 7.09 22.45 0.16 -12.07 16 10 C 0.08 4.27 5.10 -21.27 -0.11 4.16 16 11 C -0.48 -27.04 9.54 23.32 0.22 -26.82 16 12 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 13 C 0.05 2.69 5.40 85.24 0.46 3.15 16 14 N -0.84 -46.47 13.93 21.82 0.30 -46.16 16 15 Si 0.96 43.38 24.51 68.60 1.68 45.06 16 16 H -0.26 -11.11 6.70 99.48 0.67 -10.44 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.25 -11.72 6.87 99.48 0.68 -11.03 16 19 C -0.22 -10.33 9.36 22.45 0.21 -10.12 16 20 C -0.03 -1.25 4.96 -19.88 -0.10 -1.35 16 21 C -0.10 -3.36 8.51 71.24 0.61 -2.75 16 22 C -0.03 -0.82 5.30 -19.98 -0.11 -0.92 16 23 C -0.12 -3.62 7.63 22.27 0.17 -3.45 16 24 C -0.11 -2.67 9.96 22.07 0.22 -2.45 16 25 C -0.12 -2.62 9.95 22.04 0.22 -2.40 16 26 C -0.10 -2.28 9.56 22.33 0.21 -2.07 16 27 C -0.08 -2.42 5.75 -21.25 -0.12 -2.55 16 28 H 0.06 0.73 7.63 -2.39 -0.02 0.71 16 29 H 0.06 0.73 7.63 -2.39 -0.02 0.71 16 30 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.15 2.84 6.15 -2.91 -0.02 2.82 16 32 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.10 4.62 4.73 -2.91 -0.01 4.60 16 35 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 36 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.07 2.27 6.72 -2.39 -0.02 2.26 16 38 H 0.06 1.95 6.92 -2.39 -0.02 1.93 16 39 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 40 H 0.12 3.94 6.21 -2.91 -0.02 3.93 16 41 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.14 2.83 7.60 -2.91 -0.02 2.81 16 Total: -1.00 -63.33 347.02 5.86 -57.47 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.97 Total: 24.99 kcal Atomic # 6 Polarization: -77.33 SS G_CDS: 3.77 Total: -73.56 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.30 Total: -46.16 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.87 Total: -7.80 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.68 Total: 45.06 kcal Total: -63.33 5.86 -57.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241978120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.845 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds