Wall clock time and date at job start Tue Mar 31 2020 12:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 116.99633 * 2 1 4 4 C 1.39391 * 119.79656 * 0.02562 * 3 2 1 5 5 C 1.35955 * 121.77705 * 180.02562 * 4 3 2 6 6 C 1.40665 * 120.78649 * 359.96682 * 5 4 3 7 7 C 1.40498 * 121.24392 * 180.02562 * 6 5 4 8 8 C 1.36245 * 119.65104 * 179.16252 * 7 6 5 9 9 C 1.39216 * 120.99004 * 0.82693 * 8 7 6 10 10 C 1.36394 * 120.88805 * 359.45198 * 9 8 7 11 11 C 1.39975 * 119.62102 * 359.97438 * 10 9 8 12 12 C 1.39619 * 119.78757 * 179.97438 * 3 2 1 13 13 C 1.47361 * 120.72808 * 0.02562 * 12 3 2 14 14 C 1.40264 * 119.90644 * 89.99463 * 13 12 3 15 15 C 1.36076 * 120.09293 * 180.25592 * 14 13 12 16 16 C 1.41043 * 119.90166 * 359.50871 * 15 14 13 17 17 C 1.40871 * 120.08989 * 180.25081 * 16 15 14 18 18 H 1.08003 * 119.99580 * 204.92459 * 17 16 15 19 19 C 1.39930 * 120.00231 * 24.92608 * 17 16 15 20 20 N 1.30855 * 119.99604 * 17.86776 * 19 17 16 21 21 Si 1.86793 * 120.00111 * 197.87376 * 19 17 16 22 22 H 1.48497 * 109.47262 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47415 * 119.99712 * 21 19 17 24 24 H 1.48505 * 109.47229 * 239.99621 * 21 19 17 25 25 C 1.41008 * 119.81624 * 0.51110 * 16 15 14 26 26 C 1.36099 * 119.90316 * 359.74069 * 25 16 15 27 27 C 1.50703 * 119.95200 * 179.97438 * 26 25 16 28 28 H 1.09005 * 109.46806 * 60.00388 * 1 2 3 29 29 H 1.09004 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47662 * 299.99959 * 1 2 3 31 31 H 1.08003 * 119.11328 * 359.97432 * 4 3 2 32 32 H 1.08003 * 119.60909 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.16806 * 359.97438 * 7 6 5 34 34 H 1.07996 * 119.50476 * 180.29741 * 8 7 6 35 35 H 1.08003 * 119.55654 * 179.42455 * 9 8 7 36 36 H 1.08003 * 120.18951 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.95443 * 359.97438 * 14 13 12 38 38 H 1.08000 * 120.04531 * 179.74442 * 15 14 13 39 39 H 0.97001 * 119.99811 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.04619 * 179.71363 * 25 16 15 41 41 H 1.08995 * 109.47134 * 270.02369 * 27 26 25 42 42 H 1.09000 * 109.46555 * 30.02776 * 27 26 25 43 43 H 1.08996 * 109.46717 * 150.01822 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2817 2.3755 0.0005 5 6 1.8566 3.6075 0.0000 6 6 3.2561 3.7489 -0.0003 7 6 3.8604 5.0173 -0.0003 8 6 5.2191 5.1166 0.0166 9 6 6.0210 3.9787 0.0167 10 6 5.4676 2.7321 0.0110 11 6 4.0747 2.5935 0.0056 12 6 3.4396 1.2772 0.0005 13 6 4.2533 0.0486 0.0005 14 6 4.6399 -0.5342 -1.2153 15 6 5.3869 -1.6715 -1.2197 16 6 5.7812 -2.2585 0.0006 17 6 6.5591 -3.4330 0.0006 18 1 6.5313 -4.0990 0.8504 19 6 7.3678 -3.7366 -1.1002 20 7 7.6814 -2.8009 -1.9595 21 14 7.9994 -5.4777 -1.3432 22 1 7.5064 -6.3415 -0.2405 23 1 7.5101 -6.0051 -2.6423 24 1 9.4844 -5.4705 -1.3396 25 6 5.3901 -1.6695 1.2206 26 6 4.6386 -0.5348 1.2161 27 6 4.2194 0.0952 2.5193 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2044 2.2984 0.0005 32 1 1.2313 4.4881 0.0001 33 1 3.2508 5.9089 -0.0004 34 1 5.6810 6.0928 0.0215 35 1 7.0959 4.0844 0.0209 36 1 6.1005 1.8569 0.0108 37 1 4.3404 -0.0821 -2.1493 38 1 5.6807 -2.1219 -2.1564 39 1 8.2417 -3.0115 -2.7228 40 1 5.6860 -2.1184 2.1572 41 1 3.2618 -0.3206 2.8325 42 1 4.9716 -0.1107 3.2809 43 1 4.1219 1.1727 2.3871 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242332577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:03 Heat of formation + Delta-G solvation = 16.832143 kcal Electronic energy + Delta-G solvation = -25875.173874 eV Core-core repulsion = 22428.574308 eV Total energy + Delta-G solvation = -3446.599566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.18159 -38.45725 -37.63745 -35.12800 -34.12943 -32.29191 -31.15618 -30.01242 -29.49560 -28.63768 -26.72840 -25.75665 -25.06866 -23.03929 -22.12169 -21.61099 -20.26660 -19.60465 -17.99791 -16.95763 -16.78559 -16.50804 -15.44845 -15.30077 -15.16894 -14.57765 -14.20449 -13.87795 -13.72456 -13.44490 -13.32575 -12.96950 -12.73269 -12.63825 -12.48748 -12.36564 -11.88430 -11.61958 -11.57791 -11.45895 -11.21694 -11.06748 -10.95898 -10.86526 -10.72272 -10.36246 -10.34948 -10.16105 -9.62543 -9.41607 -9.16669 -9.03864 -8.10885 -7.39028 -7.14539 -7.09351 -6.76824 -4.32533 0.83935 1.37883 2.35772 2.72523 3.07385 3.12510 3.15588 3.18703 3.28917 3.65443 3.92845 4.42431 4.58016 4.84417 5.03938 5.12461 5.17763 5.28924 5.29835 5.44674 5.48679 5.59406 5.61885 5.68119 5.75039 6.04225 6.09837 6.20423 6.21502 6.27269 6.41516 6.42359 6.45576 6.60353 6.64208 6.69909 6.78796 6.86410 7.01086 7.07385 7.18060 7.25993 7.31217 7.42209 7.69239 7.78313 8.01790 8.10174 8.18578 8.32242 8.66394 8.90548 9.02059 10.16684 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.004104 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.225788 B = 6820.280605 C = 7869.792915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.103 3.897 4 C -0.177 4.177 5 C -0.096 4.096 6 C -0.076 4.076 7 C -0.110 4.110 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.084 4.084 11 C -0.018 4.018 12 C -0.006 4.006 13 C -0.182 4.182 14 C -0.071 4.071 15 C -0.171 4.171 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.788 5.788 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.228 4.228 26 C -0.034 4.034 27 C -0.104 4.104 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 10.749 2.239 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.209 6.209 3 C 0.058 3.942 4 C -0.195 4.195 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.128 4.128 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.102 4.102 11 C -0.018 4.018 12 C -0.007 4.007 13 C -0.183 4.183 14 C -0.090 4.090 15 C -0.190 4.190 16 C 0.118 3.882 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.413 5.413 21 Si 0.730 3.270 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.247 4.247 26 C -0.034 4.034 27 C -0.161 4.161 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.715 10.590 2.032 13.865 hybrid contribution 0.031 -0.553 -0.276 0.619 sum -8.684 10.037 1.755 13.388 Atomic orbital electron populations 1.22987 0.79968 1.03490 1.00418 1.86229 1.19673 1.26346 1.88618 1.19172 0.91735 0.83816 0.99449 1.20820 0.99687 0.92548 1.06453 1.20608 0.93445 0.96721 1.00628 1.17965 0.93193 0.93045 1.03457 1.20880 0.94964 0.95779 1.01208 1.20735 0.93827 0.98310 1.01625 1.20867 0.99817 0.92443 1.01313 1.21105 0.93911 0.98052 0.97095 1.18975 0.93220 0.91003 0.98628 1.19264 0.88915 0.92253 1.00289 1.17474 1.10095 0.97781 0.92976 1.20363 0.97887 0.96113 0.94633 1.20903 1.01820 0.97694 0.98601 1.17627 0.88666 0.91148 0.90797 1.19563 1.21327 1.05770 1.02058 0.90405 1.25928 0.94844 0.98590 0.94809 1.69859 1.27131 1.33328 1.10976 0.86300 0.78716 0.82602 0.79358 1.18364 1.19685 1.19990 1.20475 1.08606 0.98671 0.96959 1.19022 0.96871 0.95115 0.92356 1.20676 1.00079 0.99632 0.95684 0.93324 0.88638 0.93332 0.86050 0.86112 0.86294 0.86639 0.86280 0.84694 0.89819 0.86639 0.90899 0.89082 0.92870 0.93004 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.80 101.05 0.99 1.32 16 2 O -0.30 -5.32 9.94 -18.83 -0.19 -5.50 16 3 C 0.10 1.85 6.70 -38.64 -0.26 1.59 16 4 C -0.18 -2.57 8.90 -39.97 -0.36 -2.92 16 5 C -0.10 -1.33 9.70 -39.48 -0.38 -1.71 16 6 C -0.08 -1.20 5.74 -106.84 -0.61 -1.81 16 7 C -0.11 -1.47 9.77 -39.45 -0.39 -1.85 16 8 C -0.13 -1.66 9.95 -39.94 -0.40 -2.06 16 9 C -0.13 -1.87 9.96 -39.88 -0.40 -2.27 16 10 C -0.08 -1.49 9.46 -39.60 -0.37 -1.86 16 11 C -0.02 -0.33 5.65 -104.79 -0.59 -0.92 16 12 C -0.01 -0.12 4.00 -102.50 -0.41 -0.53 16 13 C -0.18 -4.11 3.76 -104.68 -0.39 -4.50 16 14 C -0.07 -1.73 9.72 -39.60 -0.38 -2.11 16 15 C -0.17 -4.48 8.62 -39.30 -0.34 -4.82 16 16 C 0.12 3.21 5.57 -106.79 -0.59 2.61 16 17 C -0.46 -12.14 9.02 -37.95 -0.34 -12.48 16 18 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 19 C 0.08 1.91 5.13 -17.33 -0.09 1.83 16 20 N -0.79 -20.27 10.97 55.55 0.61 -19.66 16 21 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.23 -5.64 9.36 -39.30 -0.37 -6.01 16 26 C -0.03 -0.76 5.87 -104.64 -0.61 -1.38 16 27 C -0.10 -2.00 9.60 36.01 0.35 -1.66 16 28 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.50 7.63 -51.93 -0.40 0.11 16 31 H 0.12 1.39 6.18 -52.48 -0.32 1.07 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.14 2.65 7.30 -52.48 -0.38 2.27 16 37 H 0.08 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.05 0.96 6.86 -51.93 -0.36 0.61 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -29.07 358.79 -10.69 -39.76 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.53 Total: 7.99 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: -5.96 Total: -41.55 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.61 Total: -19.66 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.19 Total: -5.50 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.07 -10.69 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242332577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.596 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds