Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35708 * 116.99633 * 2 1 4 4 C 1.39391 * 119.79656 * 0.02562 * 3 2 1 5 5 C 1.35955 * 121.77705 * 180.02562 * 4 3 2 6 6 C 1.40665 * 120.78649 * 359.96682 * 5 4 3 7 7 C 1.40498 * 121.24392 * 180.02562 * 6 5 4 8 8 C 1.36245 * 119.65104 * 179.16252 * 7 6 5 9 9 C 1.39216 * 120.99004 * 0.82693 * 8 7 6 10 10 C 1.36394 * 120.88805 * 359.45198 * 9 8 7 11 11 C 1.39975 * 119.62102 * 359.97438 * 10 9 8 12 12 C 1.39619 * 119.78757 * 179.97438 * 3 2 1 13 13 C 1.47361 * 120.72808 * 0.02562 * 12 3 2 14 14 C 1.40264 * 119.90644 * 89.99463 * 13 12 3 15 15 C 1.36076 * 120.09293 * 180.25592 * 14 13 12 16 16 C 1.41043 * 119.90166 * 359.50871 * 15 14 13 17 17 C 1.40871 * 120.08989 * 180.25081 * 16 15 14 18 18 H 1.08003 * 119.99580 * 204.92459 * 17 16 15 19 19 C 1.39930 * 120.00231 * 24.92608 * 17 16 15 20 20 N 1.30855 * 119.99604 * 17.86776 * 19 17 16 21 21 Si 1.86793 * 120.00111 * 197.87376 * 19 17 16 22 22 H 1.48497 * 109.47262 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47415 * 119.99712 * 21 19 17 24 24 H 1.48505 * 109.47229 * 239.99621 * 21 19 17 25 25 C 1.41008 * 119.81624 * 0.51110 * 16 15 14 26 26 C 1.36099 * 119.90316 * 359.74069 * 25 16 15 27 27 C 1.50703 * 119.95200 * 179.97438 * 26 25 16 28 28 H 1.09005 * 109.46806 * 60.00388 * 1 2 3 29 29 H 1.09004 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47662 * 299.99959 * 1 2 3 31 31 H 1.08003 * 119.11328 * 359.97432 * 4 3 2 32 32 H 1.08003 * 119.60909 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.16806 * 359.97438 * 7 6 5 34 34 H 1.07996 * 119.50476 * 180.29741 * 8 7 6 35 35 H 1.08003 * 119.55654 * 179.42455 * 9 8 7 36 36 H 1.08003 * 120.18951 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.95443 * 359.97438 * 14 13 12 38 38 H 1.08000 * 120.04531 * 179.74442 * 15 14 13 39 39 H 0.97001 * 119.99811 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.04619 * 179.71363 * 25 16 15 41 41 H 1.08995 * 109.47134 * 270.02369 * 27 26 25 42 42 H 1.09000 * 109.46555 * 30.02776 * 27 26 25 43 43 H 1.08996 * 109.46717 * 150.01822 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2817 2.3755 0.0005 5 6 1.8566 3.6075 0.0000 6 6 3.2561 3.7489 -0.0003 7 6 3.8604 5.0173 -0.0003 8 6 5.2191 5.1166 0.0166 9 6 6.0210 3.9787 0.0167 10 6 5.4676 2.7321 0.0110 11 6 4.0747 2.5935 0.0056 12 6 3.4396 1.2772 0.0005 13 6 4.2533 0.0486 0.0005 14 6 4.6399 -0.5342 -1.2153 15 6 5.3869 -1.6715 -1.2197 16 6 5.7812 -2.2585 0.0006 17 6 6.5591 -3.4330 0.0006 18 1 6.5313 -4.0990 0.8504 19 6 7.3678 -3.7366 -1.1002 20 7 7.6814 -2.8009 -1.9595 21 14 7.9994 -5.4777 -1.3432 22 1 7.5064 -6.3415 -0.2405 23 1 7.5101 -6.0051 -2.6423 24 1 9.4844 -5.4705 -1.3396 25 6 5.3901 -1.6695 1.2206 26 6 4.6386 -0.5348 1.2161 27 6 4.2194 0.0952 2.5193 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2044 2.2984 0.0005 32 1 1.2313 4.4881 0.0001 33 1 3.2508 5.9089 -0.0004 34 1 5.6810 6.0928 0.0215 35 1 7.0959 4.0844 0.0209 36 1 6.1005 1.8569 0.0108 37 1 4.3404 -0.0821 -2.1493 38 1 5.6807 -2.1219 -2.1564 39 1 8.2417 -3.0115 -2.7228 40 1 5.6860 -2.1184 2.1572 41 1 3.2618 -0.3206 2.8325 42 1 4.9716 -0.1107 3.2809 43 1 4.1219 1.1727 2.3871 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242332577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = 4.114275 kcal Electronic energy + Delta-G solvation = -25875.725362 eV Core-core repulsion = 22428.574308 eV Total energy + Delta-G solvation = -3447.151054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.42475 -39.65308 -39.45317 -36.35776 -35.87395 -33.74778 -32.97072 -31.54971 -30.67215 -30.02617 -27.88656 -27.55270 -26.70909 -24.29955 -23.28278 -23.13469 -22.09806 -21.25206 -19.14783 -18.82099 -18.10287 -17.72193 -17.13957 -16.55447 -16.43611 -15.98792 -15.63088 -15.44870 -15.32960 -14.78139 -14.61049 -14.30489 -14.18679 -14.01070 -13.81671 -13.73280 -13.58708 -13.30859 -13.15161 -12.75284 -12.70233 -12.59948 -12.37408 -12.22240 -12.19956 -11.96870 -11.69039 -11.46371 -11.38167 -11.20248 -10.99227 -10.38224 -9.33859 -9.26151 -9.03308 -8.65526 -8.37306 -6.31911 -0.33595 0.20606 0.91380 1.15582 1.19348 1.36284 1.48276 1.52334 2.12317 2.19587 2.52532 2.69232 3.22973 3.69350 3.76970 3.94369 4.08512 4.11036 4.28389 4.32954 4.38317 4.39758 4.41532 4.43270 4.52306 4.57084 4.65264 4.72471 4.83528 4.85414 5.03741 5.04894 5.07930 5.13988 5.14992 5.30790 5.33242 5.34216 5.42621 5.53090 5.66285 5.70020 5.76242 5.92530 6.08018 6.12923 6.16021 6.25777 6.39020 6.65900 6.70252 6.93086 7.06334 8.31622 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.004104 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.225788 B = 6820.280605 C = 7869.792915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.110 3.890 4 C -0.187 4.187 5 C -0.070 4.070 6 C -0.097 4.097 7 C -0.093 4.093 8 C -0.132 4.132 9 C -0.114 4.114 10 C -0.128 4.128 11 C -0.028 4.028 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.086 4.086 15 C -0.191 4.191 16 C 0.088 3.912 17 C -0.497 4.497 18 H 0.075 0.925 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.983 3.017 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.264 1.264 25 C -0.243 4.243 26 C -0.046 4.046 27 C -0.092 4.092 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.288 0.712 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 13.996 2.815 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.064 3.936 4 C -0.205 4.205 5 C -0.088 4.088 6 C -0.097 4.097 7 C -0.111 4.111 8 C -0.150 4.150 9 C -0.132 4.132 10 C -0.146 4.146 11 C -0.028 4.028 12 C -0.069 4.069 13 C -0.155 4.155 14 C -0.104 4.104 15 C -0.210 4.210 16 C 0.086 3.914 17 C -0.526 4.526 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.449 5.449 21 Si 0.803 3.197 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.188 1.188 25 C -0.263 4.263 26 C -0.046 4.046 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.998 13.850 2.616 17.878 hybrid contribution 0.582 -1.290 -0.441 1.482 sum -10.416 12.561 2.175 16.462 Atomic orbital electron populations 1.23317 0.77061 1.04977 1.02331 1.86169 1.22913 1.27272 1.88487 1.19377 0.91252 0.85058 0.97871 1.21113 1.01219 0.91465 1.06713 1.21152 0.92935 0.98040 0.96659 1.18328 0.94174 0.93069 1.04169 1.21377 0.95437 0.96075 0.98167 1.21128 0.93999 0.98963 1.00863 1.21154 1.01054 0.92059 0.98934 1.20905 0.94031 0.98125 1.01573 1.19030 0.93435 0.91377 0.98959 1.19161 0.89894 0.91666 1.06173 1.17756 1.07791 0.98079 0.91868 1.20544 0.98072 0.95894 0.95913 1.20814 1.03363 0.98932 0.97938 1.17928 0.89797 0.92124 0.91537 1.19770 1.23031 1.06476 1.03363 0.90687 1.26799 0.94450 1.02813 0.93886 1.69921 1.27898 1.35460 1.11660 0.85156 0.78398 0.76776 0.79348 1.18093 1.18858 1.18827 1.20670 1.09404 0.99649 0.96565 1.19475 0.96113 0.94527 0.94448 1.20591 1.00772 0.99600 0.93877 0.91460 0.87632 0.91129 0.82526 0.81437 0.81946 0.82851 0.84877 0.88667 0.89613 0.88492 0.90144 0.88734 0.91749 0.91854 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.80 113.37 1.11 1.50 16 2 O -0.33 -11.92 9.94 -90.28 -0.90 -12.81 16 3 C 0.11 3.83 6.70 22.88 0.15 3.99 16 4 C -0.19 -4.75 8.90 22.02 0.20 -4.56 16 5 C -0.07 -1.60 9.70 22.33 0.22 -1.38 16 6 C -0.10 -2.73 5.74 -21.30 -0.12 -2.85 16 7 C -0.09 -2.01 9.77 22.36 0.22 -1.79 16 8 C -0.13 -2.93 9.95 22.04 0.22 -2.71 16 9 C -0.11 -3.27 9.96 22.07 0.22 -3.05 16 10 C -0.13 -4.74 9.46 22.26 0.21 -4.53 16 11 C -0.03 -1.01 5.65 -19.97 -0.11 -1.13 16 12 C -0.07 -2.76 4.00 -18.49 -0.07 -2.83 16 13 C -0.15 -7.37 3.76 -19.90 -0.07 -7.44 16 14 C -0.09 -4.50 9.72 22.26 0.22 -4.29 16 15 C -0.19 -10.93 8.62 22.45 0.19 -10.74 16 16 C 0.09 5.11 5.57 -21.27 -0.12 4.99 16 17 C -0.50 -28.23 9.02 23.32 0.21 -28.02 16 18 H 0.07 4.11 7.91 -2.91 -0.02 4.09 16 19 C 0.04 1.87 5.13 85.25 0.44 2.31 16 20 N -0.82 -45.08 10.97 21.83 0.24 -44.84 16 21 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 C -0.24 -12.93 9.36 22.45 0.21 -12.72 16 26 C -0.05 -2.19 5.87 -19.88 -0.12 -2.31 16 27 C -0.09 -3.60 9.60 71.24 0.68 -2.91 16 28 H 0.07 1.22 7.64 -2.38 -0.02 1.20 16 29 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.07 1.24 7.63 -2.39 -0.02 1.22 16 31 H 0.16 2.80 6.18 -2.91 -0.02 2.78 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.10 4.16 7.30 -2.91 -0.02 4.14 16 37 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 39 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 40 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 43 H 0.06 2.15 6.86 -2.39 -0.02 2.14 16 Total: -1.00 -70.85 358.79 6.27 -64.58 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 1.02 Total: 31.88 kcal Atomic # 6 Polarization: -84.37 SS G_CDS: 3.88 Total: -80.49 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.24 Total: -44.84 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.90 Total: -12.81 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -70.85 6.27 -64.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242332577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.692 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds