Wall clock time and date at job start Tue Mar 31 2020 12:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38362 * 119.86952 * 2 1 4 4 C 1.37971 * 120.13459 * 180.25111 * 3 2 1 5 5 C 1.39465 * 119.86415 * 359.74903 * 4 3 2 6 6 C 1.48179 * 120.12991 * 179.97438 * 5 4 3 7 7 C 1.36673 * 120.34093 * 129.74510 * 6 5 4 8 8 C 1.41127 * 120.58642 * 179.78908 * 7 6 5 9 9 C 1.41212 * 119.48971 * 180.24274 * 8 7 6 10 10 H 1.08002 * 120.00193 * 330.05555 * 9 8 7 11 11 C 1.39926 * 120.00222 * 150.06282 * 9 8 7 12 12 N 1.30838 * 120.00097 * 161.61986 * 11 9 8 13 13 Si 1.86797 * 119.99883 * 341.61172 * 11 9 8 14 14 H 1.48500 * 109.46989 * 95.42131 * 13 11 9 15 15 H 1.48499 * 109.47387 * 215.41901 * 13 11 9 16 16 H 1.48504 * 109.47318 * 335.42346 * 13 11 9 17 17 C 1.39960 * 121.02020 * 0.44238 * 8 7 6 18 18 C 1.39892 * 120.10985 * 359.82405 * 17 8 7 19 19 C 1.40862 * 121.14193 * 179.97438 * 18 17 8 20 20 C 1.36191 * 119.60608 * 180.02562 * 19 18 17 21 21 C 1.39246 * 120.94293 * 0.02562 * 20 19 18 22 22 C 1.36537 * 120.98113 * 0.02562 * 21 20 19 23 23 C 1.39816 * 119.73573 * 359.95039 * 22 21 20 24 24 C 1.39431 * 119.73724 * 359.97438 * 5 4 3 25 25 C 1.38007 * 119.86667 * 0.02562 * 24 5 4 26 26 C 1.50703 * 119.93484 * 179.97438 * 25 24 5 27 27 O 1.42907 * 109.46844 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47359 * 270.25869 * 1 2 3 29 29 H 1.09004 * 109.47486 * 30.25480 * 1 2 3 30 30 H 1.09004 * 109.47289 * 150.25540 * 1 2 3 31 31 H 1.08008 * 119.93484 * 0.02562 * 3 2 1 32 32 H 1.07992 * 120.06490 * 179.76808 * 4 3 2 33 33 H 1.08005 * 119.70852 * 359.97438 * 7 6 5 34 34 H 0.97004 * 119.99516 * 179.97438 * 12 11 9 35 35 H 1.07996 * 119.94347 * 179.79048 * 17 8 7 36 36 H 1.08002 * 120.19751 * 0.04355 * 19 18 17 37 37 H 1.07996 * 119.52712 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.51005 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.13539 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.06309 * 179.97438 * 24 5 4 41 41 H 1.08993 * 109.47212 * 240.00262 * 26 25 24 42 42 H 1.08997 * 109.47054 * 119.99719 * 26 25 24 43 43 H 0.96696 * 113.99785 * 60.00014 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5757 1.2062 -0.0052 5 6 4.2758 0.0000 -0.0052 6 6 5.7576 0.0000 -0.0114 7 6 6.4517 -0.7520 0.8945 8 6 7.8630 -0.7593 0.8904 9 6 8.5568 -1.5488 1.8336 10 1 8.1189 -1.7431 2.8015 11 6 9.8116 -2.0792 1.5141 12 7 10.6086 -2.4926 2.4658 13 14 10.3487 -2.1972 -0.2710 14 1 11.1658 -1.0079 -0.6217 15 1 11.1572 -3.4277 -0.4644 16 1 9.1501 -2.2498 -1.1462 17 6 8.5856 0.0070 -0.0313 18 6 7.9115 0.7941 -0.9710 19 6 8.6169 1.5741 -1.9081 20 6 7.9289 2.3293 -2.8087 21 6 6.5366 2.3425 -2.8168 22 6 5.8215 1.5994 -1.9220 23 6 6.4925 0.8109 -0.9823 24 6 3.5758 -1.2059 0.0006 25 6 2.1958 -1.1995 0.0058 26 6 1.4377 -2.5019 0.0115 27 8 2.3626 -3.5913 0.0098 28 1 -0.3634 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6528 2.1334 0.0004 32 1 4.1124 2.1433 -0.0090 33 1 5.9155 -1.3483 1.6180 34 1 11.4783 -2.8606 2.2443 35 1 9.6653 -0.0090 -0.0166 36 1 9.6969 1.5730 -1.9126 37 1 8.4710 2.9272 -3.5264 38 1 6.0145 2.9502 -3.5409 39 1 4.7418 1.6195 -1.9407 40 1 4.1126 -2.1430 0.0002 41 1 0.8076 -2.5595 -0.8759 42 1 0.8143 -2.5555 0.9040 43 1 2.9570 -3.6038 0.7724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242388793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:14 Heat of formation + Delta-G solvation = -5.467607 kcal Electronic energy + Delta-G solvation = -25483.000748 eV Core-core repulsion = 22035.434192 eV Total energy + Delta-G solvation = -3447.566556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92130 -38.83005 -36.66121 -35.89705 -34.17427 -32.96953 -31.15307 -30.99208 -29.94947 -28.84278 -26.68595 -25.97944 -25.05107 -22.62218 -21.81227 -21.61465 -20.80286 -20.00687 -17.90691 -17.23887 -16.29678 -16.17602 -15.80375 -15.51155 -15.22861 -14.89599 -14.31912 -14.25652 -13.86769 -13.60473 -13.41476 -13.34945 -12.93467 -12.63412 -12.59410 -12.44628 -12.29192 -12.03115 -11.83263 -11.62161 -11.43903 -11.21098 -11.02811 -10.91544 -10.77900 -10.38799 -10.19470 -10.09265 -9.90988 -9.66906 -9.29490 -8.89207 -8.62628 -8.26940 -7.70986 -7.14298 -6.89360 -4.61668 1.14896 1.50694 1.70910 2.06952 2.94670 3.03335 3.14176 3.27579 3.73752 3.91258 3.92414 4.33609 4.64003 4.70057 4.87593 4.95353 5.13462 5.23156 5.26799 5.33007 5.43448 5.49600 5.54052 5.59933 5.62466 5.69604 5.73514 5.84065 5.99838 6.13269 6.17163 6.19487 6.37630 6.41457 6.48036 6.59705 6.64094 6.64665 6.81365 6.91331 7.08371 7.13450 7.14719 7.26904 7.28710 7.45584 7.51736 7.70832 7.79880 7.88795 8.15863 8.41042 8.59695 9.85869 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004681 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.305216 B = 5980.765778 C = 7652.751966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.107 4.107 5 C -0.020 4.020 6 C -0.044 4.044 7 C -0.114 4.114 8 C 0.088 3.912 9 C -0.425 4.425 10 H 0.094 0.906 11 C 0.083 3.917 12 N -0.795 5.795 13 Si 0.917 3.083 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.242 1.242 17 C -0.288 4.288 18 C 0.024 3.976 19 C -0.153 4.153 20 C -0.108 4.108 21 C -0.190 4.190 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.100 4.100 25 C -0.131 4.131 26 C 0.122 3.878 27 O -0.565 6.565 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.289 0.711 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 3.441 -4.308 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.125 4.125 5 C -0.020 4.020 6 C -0.044 4.044 7 C -0.132 4.132 8 C 0.085 3.915 9 C -0.452 4.452 10 H 0.112 0.888 11 C -0.138 4.138 12 N -0.417 5.417 13 Si 0.743 3.257 14 H -0.194 1.194 15 H -0.220 1.220 16 H -0.165 1.165 17 C -0.308 4.308 18 C 0.024 3.976 19 C -0.171 4.171 20 C -0.126 4.126 21 C -0.208 4.208 22 C -0.097 4.097 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.132 4.132 26 C 0.044 3.956 27 O -0.371 6.371 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.124 3.146 -4.685 15.210 hybrid contribution 0.857 0.218 -0.126 0.893 sum -13.267 3.363 -4.811 14.508 Atomic orbital electron populations 1.20786 0.91581 1.02582 1.02087 1.19607 0.95575 0.92550 1.01717 1.20888 0.94011 0.97149 1.01676 1.21332 0.93738 0.97847 0.99599 1.18872 0.92525 0.92784 0.97795 1.19262 0.89657 0.98341 0.97153 1.21134 0.94255 0.99158 0.98689 1.17503 0.91016 0.91240 0.91752 1.19634 0.99856 1.24721 1.00984 0.88790 1.26250 0.94831 0.92194 1.00517 1.69694 1.08021 1.28489 1.35498 0.86157 0.80209 0.77071 0.82269 1.19429 1.21954 1.16486 1.20764 0.97852 1.07244 1.04957 1.17727 0.91742 0.94411 0.93715 1.20904 0.98740 1.00042 0.97421 1.20534 0.94274 0.99221 0.98556 1.20386 0.93981 1.04449 1.02031 1.20818 0.98703 0.95658 0.94565 1.18457 0.92154 1.02182 0.99127 1.21084 0.92953 0.98047 0.99666 1.20377 0.94376 0.95442 1.02963 1.21126 0.90333 0.82400 1.01708 1.86528 1.51526 1.48377 1.50664 0.91325 0.91631 0.91732 0.86215 0.85686 0.87244 0.90028 0.87826 0.87270 0.87842 0.87935 0.87085 0.85188 0.88411 0.92423 0.77070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.59 36.00 0.35 -0.63 16 2 C -0.09 -1.13 5.88 -104.55 -0.62 -1.75 16 3 C -0.12 -1.52 9.68 -39.63 -0.38 -1.90 16 4 C -0.11 -1.62 7.67 -39.22 -0.30 -1.93 16 5 C -0.02 -0.34 5.09 -104.91 -0.53 -0.87 16 6 C -0.04 -0.89 5.59 -103.14 -0.58 -1.47 16 7 C -0.11 -2.47 9.11 -39.05 -0.36 -2.83 16 8 C 0.09 2.13 5.10 -107.03 -0.55 1.59 16 9 C -0.43 -10.83 9.51 -37.82 -0.36 -11.19 16 10 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 11 C 0.08 2.09 5.38 -17.34 -0.09 1.99 16 12 N -0.79 -20.22 13.93 55.55 0.77 -19.45 16 13 Si 0.92 20.65 24.51 -169.99 -4.17 16.49 16 14 H -0.27 -5.95 6.71 56.52 0.38 -5.57 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.24 -5.68 6.88 56.52 0.39 -5.29 16 17 C -0.29 -6.96 6.86 -38.32 -0.26 -7.22 16 18 C 0.02 0.55 5.74 -106.88 -0.61 -0.06 16 19 C -0.15 -3.10 9.78 -39.33 -0.38 -3.48 16 20 C -0.11 -1.93 9.95 -39.94 -0.40 -2.33 16 21 C -0.19 -3.33 9.96 -39.82 -0.40 -3.73 16 22 C -0.08 -1.49 8.68 -39.61 -0.34 -1.83 16 23 C -0.12 -2.52 5.88 -104.66 -0.62 -3.14 16 24 C -0.10 -1.54 8.66 -39.22 -0.34 -1.88 16 25 C -0.13 -1.71 5.87 -104.67 -0.61 -2.32 16 26 C 0.12 1.32 6.16 36.01 0.22 1.54 16 27 O -0.57 -6.96 12.69 -35.23 -0.45 -7.41 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.06 0.48 6.61 -51.93 -0.34 0.14 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.87 7.30 -52.49 -0.38 1.49 16 33 H 0.11 2.17 8.01 -52.48 -0.42 1.75 16 34 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.10 2.53 4.69 -52.49 -0.25 2.28 16 36 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.88 5.69 -52.48 -0.30 1.58 16 40 H 0.13 2.00 6.57 -52.49 -0.34 1.65 16 41 H 0.10 0.96 7.47 -51.93 -0.39 0.58 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.38 3.70 8.11 45.56 0.37 4.07 16 LS Contribution 349.37 15.07 5.27 5.27 Total: -1.00 -28.14 349.37 -10.34 -38.48 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.60 Total: 10.06 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: -7.17 Total: -43.44 kcal Atomic # 7 Polarization: -20.22 SS G_CDS: 0.77 Total: -19.45 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.45 Total: -7.41 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.14 -10.34 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242388793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds