Wall clock time and date at job start Tue Mar 31 2020 12:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38362 * 119.86952 * 2 1 4 4 C 1.37971 * 120.13459 * 180.25111 * 3 2 1 5 5 C 1.39465 * 119.86415 * 359.74903 * 4 3 2 6 6 C 1.48179 * 120.12991 * 179.97438 * 5 4 3 7 7 C 1.36673 * 120.34093 * 129.74510 * 6 5 4 8 8 C 1.41127 * 120.58642 * 179.78908 * 7 6 5 9 9 C 1.41212 * 119.48971 * 180.24274 * 8 7 6 10 10 H 1.08002 * 120.00193 * 330.05555 * 9 8 7 11 11 C 1.39926 * 120.00222 * 150.06282 * 9 8 7 12 12 N 1.30838 * 120.00097 * 161.61986 * 11 9 8 13 13 Si 1.86797 * 119.99883 * 341.61172 * 11 9 8 14 14 H 1.48500 * 109.46989 * 95.42131 * 13 11 9 15 15 H 1.48499 * 109.47387 * 215.41901 * 13 11 9 16 16 H 1.48504 * 109.47318 * 335.42346 * 13 11 9 17 17 C 1.39960 * 121.02020 * 0.44238 * 8 7 6 18 18 C 1.39892 * 120.10985 * 359.82405 * 17 8 7 19 19 C 1.40862 * 121.14193 * 179.97438 * 18 17 8 20 20 C 1.36191 * 119.60608 * 180.02562 * 19 18 17 21 21 C 1.39246 * 120.94293 * 0.02562 * 20 19 18 22 22 C 1.36537 * 120.98113 * 0.02562 * 21 20 19 23 23 C 1.39816 * 119.73573 * 359.95039 * 22 21 20 24 24 C 1.39431 * 119.73724 * 359.97438 * 5 4 3 25 25 C 1.38007 * 119.86667 * 0.02562 * 24 5 4 26 26 C 1.50703 * 119.93484 * 179.97438 * 25 24 5 27 27 O 1.42907 * 109.46844 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47359 * 270.25869 * 1 2 3 29 29 H 1.09004 * 109.47486 * 30.25480 * 1 2 3 30 30 H 1.09004 * 109.47289 * 150.25540 * 1 2 3 31 31 H 1.08008 * 119.93484 * 0.02562 * 3 2 1 32 32 H 1.07992 * 120.06490 * 179.76808 * 4 3 2 33 33 H 1.08005 * 119.70852 * 359.97438 * 7 6 5 34 34 H 0.97004 * 119.99516 * 179.97438 * 12 11 9 35 35 H 1.07996 * 119.94347 * 179.79048 * 17 8 7 36 36 H 1.08002 * 120.19751 * 0.04355 * 19 18 17 37 37 H 1.07996 * 119.52712 * 179.97438 * 20 19 18 38 38 H 1.07996 * 119.51005 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.13539 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.06309 * 179.97438 * 24 5 4 41 41 H 1.08993 * 109.47212 * 240.00262 * 26 25 24 42 42 H 1.08997 * 109.47054 * 119.99719 * 26 25 24 43 43 H 0.96696 * 113.99785 * 60.00014 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5757 1.2062 -0.0052 5 6 4.2758 0.0000 -0.0052 6 6 5.7576 0.0000 -0.0114 7 6 6.4517 -0.7520 0.8945 8 6 7.8630 -0.7593 0.8904 9 6 8.5568 -1.5488 1.8336 10 1 8.1189 -1.7431 2.8015 11 6 9.8116 -2.0792 1.5141 12 7 10.6086 -2.4926 2.4658 13 14 10.3487 -2.1972 -0.2710 14 1 11.1658 -1.0079 -0.6217 15 1 11.1572 -3.4277 -0.4644 16 1 9.1501 -2.2498 -1.1462 17 6 8.5856 0.0070 -0.0313 18 6 7.9115 0.7941 -0.9710 19 6 8.6169 1.5741 -1.9081 20 6 7.9289 2.3293 -2.8087 21 6 6.5366 2.3425 -2.8168 22 6 5.8215 1.5994 -1.9220 23 6 6.4925 0.8109 -0.9823 24 6 3.5758 -1.2059 0.0006 25 6 2.1958 -1.1995 0.0058 26 6 1.4377 -2.5019 0.0115 27 8 2.3626 -3.5913 0.0098 28 1 -0.3634 0.0046 1.0276 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6528 2.1334 0.0004 32 1 4.1124 2.1433 -0.0090 33 1 5.9155 -1.3483 1.6180 34 1 11.4783 -2.8606 2.2443 35 1 9.6653 -0.0090 -0.0166 36 1 9.6969 1.5730 -1.9126 37 1 8.4710 2.9272 -3.5264 38 1 6.0145 2.9502 -3.5409 39 1 4.7418 1.6195 -1.9407 40 1 4.1126 -2.1430 0.0002 41 1 0.8076 -2.5595 -0.8759 42 1 0.8143 -2.5555 0.9040 43 1 2.9570 -3.6038 0.7724 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242388793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:13 Heat of formation + Delta-G solvation = -20.023809 kcal Electronic energy + Delta-G solvation = -25483.631952 eV Core-core repulsion = 22035.434192 eV Total energy + Delta-G solvation = -3448.197760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20263 -40.20295 -37.68600 -37.48858 -35.64564 -34.53341 -32.34396 -32.20727 -31.62353 -30.28678 -27.76160 -27.20690 -26.57842 -24.10285 -23.16903 -22.96363 -22.23091 -21.35036 -19.52945 -18.32488 -17.93980 -17.68141 -16.97962 -16.89938 -16.53742 -16.08739 -15.79935 -15.34545 -15.11629 -15.06528 -14.74750 -14.40612 -14.36943 -14.16750 -14.09268 -13.97805 -13.47930 -13.13366 -13.02708 -12.91579 -12.79268 -12.72357 -12.56461 -12.22407 -12.01822 -11.95258 -11.73124 -11.55512 -11.40400 -11.17182 -10.99424 -10.50960 -9.71055 -9.45063 -9.37737 -9.01821 -8.48804 -6.54180 -0.29236 0.38092 0.42123 0.45977 1.19639 1.27292 1.33385 1.46226 2.05743 2.10259 2.76888 2.88135 3.47374 3.55024 3.70414 3.77978 3.98488 4.01699 4.09367 4.21115 4.25365 4.34921 4.46215 4.50684 4.53425 4.54703 4.68566 4.71366 4.76849 4.86386 4.87086 4.90787 4.95246 5.01299 5.12641 5.26522 5.32270 5.38525 5.44108 5.47795 5.62051 5.64500 5.65970 5.73485 5.85737 5.90358 6.01095 6.12166 6.29109 6.30712 6.60183 6.70534 6.73046 8.05115 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.004681 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.305216 B = 5980.765778 C = 7652.751966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.113 4.113 5 C -0.053 4.053 6 C -0.027 4.027 7 C -0.144 4.144 8 C 0.079 3.921 9 C -0.465 4.465 10 H 0.067 0.933 11 C 0.056 3.944 12 N -0.834 5.834 13 Si 0.963 3.037 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.262 1.262 17 C -0.301 4.301 18 C -0.006 4.006 19 C -0.170 4.170 20 C -0.097 4.097 21 C -0.172 4.172 22 C -0.085 4.085 23 C -0.133 4.133 24 C -0.112 4.112 25 C -0.132 4.132 26 C 0.122 3.878 27 O -0.585 6.585 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.297 0.703 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.639 5.724 -7.288 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.131 4.131 5 C -0.053 4.053 6 C -0.027 4.027 7 C -0.163 4.163 8 C 0.076 3.924 9 C -0.493 4.493 10 H 0.086 0.914 11 C -0.160 4.160 12 N -0.460 5.460 13 Si 0.788 3.212 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.321 4.321 18 C -0.006 4.006 19 C -0.189 4.189 20 C -0.115 4.115 21 C -0.190 4.190 22 C -0.103 4.103 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.133 4.133 26 C 0.045 3.955 27 O -0.392 6.392 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.169 0.831 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -17.718 5.432 -7.662 20.054 hybrid contribution 1.643 -0.221 0.574 1.755 sum -16.075 5.212 -7.087 18.325 Atomic orbital electron populations 1.20894 0.88489 1.04142 1.03486 1.20088 0.97744 0.91671 0.98916 1.21237 0.92974 0.98878 1.00332 1.21360 0.94971 0.96749 1.00027 1.18781 0.90609 0.94474 1.01402 1.19618 0.91825 0.96081 0.95219 1.21157 0.93472 1.01319 1.00336 1.17650 0.92268 0.90949 0.91543 1.19565 1.01165 1.27707 1.00896 0.91438 1.26709 0.94654 0.91838 1.02844 1.69707 1.08859 1.30860 1.36530 0.85465 0.79147 0.77700 0.78877 1.18960 1.20184 1.18609 1.20848 0.97516 1.08012 1.05757 1.18048 0.92880 0.95198 0.94494 1.21131 0.99461 1.00499 0.97779 1.21007 0.94811 0.97887 0.97799 1.20949 0.94028 1.02798 1.01231 1.21088 0.99937 0.95204 0.94046 1.18876 0.91971 1.02655 0.99862 1.21081 0.94329 0.97091 1.00500 1.20668 0.93364 0.97249 1.01975 1.21334 0.89988 0.80686 1.03542 1.86494 1.52154 1.49069 1.51506 0.89811 0.90032 0.90351 0.83107 0.85876 0.86877 0.89258 0.88861 0.86594 0.83844 0.83747 0.85008 0.86363 0.86989 0.89905 0.76197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 71.23 0.68 -0.68 16 2 C -0.08 -1.70 5.88 -19.82 -0.12 -1.82 16 3 C -0.12 -2.54 9.68 22.24 0.22 -2.33 16 4 C -0.11 -3.21 7.67 22.50 0.17 -3.04 16 5 C -0.05 -1.79 5.09 -20.05 -0.10 -1.90 16 6 C -0.03 -1.14 5.59 -18.90 -0.11 -1.25 16 7 C -0.14 -6.73 9.11 22.61 0.21 -6.53 16 8 C 0.08 4.10 5.10 -21.42 -0.11 4.00 16 9 C -0.46 -25.97 9.51 23.41 0.22 -25.75 16 10 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 11 C 0.06 3.03 5.38 85.25 0.46 3.49 16 12 N -0.83 -45.38 13.93 21.82 0.30 -45.08 16 13 Si 0.96 44.90 24.51 68.60 1.68 46.58 16 14 H -0.26 -11.90 6.71 99.48 0.67 -11.24 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.26 -12.87 6.88 99.48 0.68 -12.18 16 17 C -0.30 -15.32 6.86 23.09 0.16 -15.17 16 18 C -0.01 -0.28 5.74 -21.33 -0.12 -0.40 16 19 C -0.17 -6.69 9.78 22.44 0.22 -6.47 16 20 C -0.10 -3.10 9.95 22.04 0.22 -2.88 16 21 C -0.17 -5.23 9.96 22.11 0.22 -5.01 16 22 C -0.09 -2.95 8.68 22.25 0.19 -2.76 16 23 C -0.13 -5.64 5.88 -19.89 -0.12 -5.76 16 24 C -0.11 -3.44 8.66 22.50 0.19 -3.25 16 25 C -0.13 -3.14 5.87 -19.90 -0.12 -3.26 16 26 C 0.12 2.29 6.16 71.24 0.44 2.73 16 27 O -0.58 -13.86 12.69 -148.98 -1.89 -15.75 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.78 8.09 -2.38 -0.02 0.76 16 30 H 0.08 0.77 6.61 -2.38 -0.02 0.75 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.12 3.46 7.30 -2.91 -0.02 3.44 16 33 H 0.11 4.97 8.01 -2.91 -0.02 4.94 16 34 H 0.30 14.50 8.30 -92.71 -0.77 13.73 16 35 H 0.09 4.81 4.69 -2.91 -0.01 4.80 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.13 4.02 5.69 -2.91 -0.02 4.00 16 40 H 0.12 3.81 6.57 -2.91 -0.02 3.79 16 41 H 0.11 1.80 7.47 -2.39 -0.02 1.78 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.39 7.63 8.11 -74.06 -0.60 7.02 16 Total: -1.00 -65.92 349.37 3.29 -62.63 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.39 Total: 29.63 kcal Atomic # 6 Polarization: -80.82 SS G_CDS: 2.81 Total: -78.01 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.30 Total: -45.08 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.89 Total: -15.75 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.68 Total: 46.58 kcal Total: -65.92 3.29 -62.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242388793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.605 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds