Wall clock time and date at job start Tue Mar 31 2020 12:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38017 * 120.06528 * 2 1 4 4 C 1.38318 * 120.12744 * 180.22942 * 3 2 1 5 5 C 1.38357 * 120.27031 * 359.78717 * 4 3 2 6 6 C 1.50702 * 119.93671 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46614 * 270.01809 * 6 5 4 8 8 C 1.37970 * 120.12911 * 359.97438 * 5 4 3 9 9 C 1.39418 * 120.06962 * 179.75954 * 2 1 3 10 10 C 1.48175 * 120.13079 * 0.03135 * 9 2 1 11 11 C 1.36679 * 120.33937 * 244.74335 * 10 9 2 12 12 C 1.41125 * 120.58867 * 179.97438 * 11 10 9 13 13 C 1.41220 * 119.49120 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99674 * 333.76278 * 13 12 11 15 15 C 1.39928 * 120.00207 * 153.76130 * 13 12 11 16 16 N 1.30836 * 120.00009 * 342.17119 * 15 13 12 17 17 Si 1.86801 * 120.00037 * 162.16812 * 15 13 12 18 18 H 1.48497 * 109.47072 * 59.99979 * 17 15 13 19 19 H 1.48502 * 109.47210 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46846 * 300.00132 * 17 15 13 21 21 C 1.39966 * 121.01945 * 359.67597 * 12 11 10 22 22 C 1.39888 * 120.10839 * 0.59917 * 21 12 11 23 23 C 1.40854 * 121.13593 * 179.70784 * 22 21 12 24 24 C 1.36186 * 119.60932 * 179.70427 * 23 22 21 25 25 C 1.39250 * 120.94006 * 359.97438 * 24 23 22 26 26 C 1.36538 * 120.97876 * 0.02562 * 25 24 23 27 27 C 1.39813 * 119.73759 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47058 * 270.23512 * 1 2 3 29 29 H 1.08996 * 109.47028 * 30.24156 * 1 2 3 30 30 H 1.09003 * 109.46711 * 150.23598 * 1 2 3 31 31 H 1.07994 * 119.93471 * 359.97280 * 3 2 1 32 32 H 1.08004 * 119.86126 * 179.76891 * 4 3 2 33 33 H 1.09000 * 109.46912 * 30.01458 * 6 5 4 34 34 H 1.08998 * 109.47396 * 150.01768 * 6 5 4 35 35 H 0.96696 * 113.99842 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.06334 * 180.02562 * 8 5 4 37 37 H 1.07993 * 119.70717 * 359.97431 * 11 10 9 38 38 H 0.96999 * 119.99666 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.93998 * 180.02562 * 21 12 11 40 40 H 1.08003 * 120.19910 * 359.70663 * 23 22 21 41 41 H 1.07999 * 119.53637 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.51042 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.13202 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1945 0.0000 4 6 3.5816 1.1960 -0.0048 5 6 4.2804 0.0018 -0.0052 6 6 5.7873 0.0122 -0.0110 7 8 6.2584 0.0133 -1.3601 8 6 3.6002 -1.1986 -0.0002 9 6 2.2056 -1.2065 0.0051 10 6 1.4692 -2.4923 0.0098 11 6 1.5623 -3.3374 1.0800 12 6 0.8628 -4.5630 1.0902 13 6 0.9761 -5.4188 2.2078 14 1 1.8597 -5.3831 2.8279 15 6 -0.0563 -6.3130 2.5119 16 7 -1.2483 -6.1333 2.0034 17 14 0.2673 -7.7633 3.6439 18 1 0.7135 -7.2662 4.9701 19 1 -0.9797 -8.5535 3.8049 20 1 1.3255 -8.6235 3.0560 21 6 0.0536 -4.9407 0.0125 22 6 -0.0630 -4.1058 -1.1038 23 6 -0.8664 -4.4673 -2.2029 24 6 -0.9624 -3.6280 -3.2711 25 6 -0.2775 -2.4158 -3.2930 26 6 0.5098 -2.0344 -2.2447 27 6 0.6332 -2.8696 -1.1302 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6585 2.1297 -0.0004 32 1 4.1184 2.1332 -0.0085 33 1 6.1464 0.9056 0.5000 34 1 6.1588 -0.8743 0.5028 35 1 7.2220 0.0203 -1.4403 36 1 4.1467 -2.1301 -0.0001 37 1 2.1767 -3.0648 1.9253 38 1 -1.9639 -6.7534 2.2139 39 1 -0.4743 -5.8826 0.0389 40 1 -1.4033 -5.4045 -2.1985 41 1 -1.5791 -3.9062 -4.1130 42 1 -0.3705 -1.7677 -4.1519 43 1 1.0352 -1.0914 -2.2763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242670132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:19 Heat of formation + Delta-G solvation = -1.743711 kcal Electronic energy + Delta-G solvation = -25594.149536 eV Core-core repulsion = 22146.744460 eV Total energy + Delta-G solvation = -3447.405075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.74341 -38.46864 -36.70430 -35.69687 -33.79579 -32.80261 -31.69824 -29.97491 -29.52888 -28.37336 -27.44421 -25.31818 -24.21584 -22.94338 -21.81564 -21.40271 -20.74579 -19.41621 -17.56056 -17.44898 -16.11869 -16.07115 -15.61531 -15.54163 -14.99762 -14.74058 -14.29444 -13.87828 -13.70456 -13.33170 -13.26311 -13.03228 -12.64205 -12.52228 -12.42421 -12.08136 -12.02401 -11.73175 -11.60368 -11.44282 -11.24857 -10.97611 -10.84952 -10.78977 -10.68483 -10.46253 -10.13638 -10.03350 -9.66949 -9.55552 -9.14161 -8.68036 -8.48952 -8.13360 -7.50089 -6.88979 -6.71000 -4.41338 1.42871 1.59692 1.85256 2.29050 2.95724 3.00631 3.03759 3.24443 3.82973 3.86096 4.02115 4.52952 4.78199 4.93957 5.03862 5.18071 5.24591 5.31042 5.40869 5.57036 5.63214 5.74424 5.76991 5.77837 5.91103 6.00176 6.07808 6.16535 6.25448 6.30668 6.39797 6.60129 6.60675 6.63818 6.70755 6.78745 6.89437 6.95099 6.99334 7.05729 7.23713 7.30784 7.39737 7.45911 7.53563 7.54437 7.68900 7.88295 8.05969 8.14111 8.49521 8.71366 8.78207 10.05232 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.004442 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.123543 B = 6302.345288 C = 7694.513931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.106 4.106 6 C 0.121 3.879 7 O -0.567 6.567 8 C -0.084 4.084 9 C -0.021 4.021 10 C -0.050 4.050 11 C -0.126 4.126 12 C 0.102 3.898 13 C -0.450 4.450 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.778 5.778 17 Si 0.908 3.092 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.204 4.204 22 C 0.001 3.999 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.191 4.191 26 C -0.076 4.076 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.376 0.624 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.283 0.717 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 9.007 -2.363 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.125 4.125 5 C -0.106 4.106 6 C 0.043 3.957 7 O -0.372 6.372 8 C -0.102 4.102 9 C -0.021 4.021 10 C -0.050 4.050 11 C -0.144 4.144 12 C 0.099 3.901 13 C -0.478 4.478 14 H 0.097 0.903 15 C -0.145 4.145 16 N -0.402 5.402 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.225 4.225 22 C 0.001 3.999 23 C -0.156 4.156 24 C -0.136 4.136 25 C -0.209 4.209 26 C -0.094 4.094 27 C -0.118 4.118 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.222 0.778 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.015 8.903 -2.448 11.020 hybrid contribution 0.612 -0.615 0.729 1.133 sum 6.627 8.289 -1.719 10.750 Atomic orbital electron populations 1.21058 0.91040 1.03750 1.02596 1.20072 0.96299 0.92051 0.97851 1.20888 0.93894 0.97319 1.02512 1.20897 0.94070 0.96993 1.00534 1.19410 0.93896 0.93486 1.03788 1.20956 0.91142 1.00062 0.83494 1.86613 1.26337 1.97695 1.26572 1.21136 0.93304 0.97293 0.98507 1.18787 0.92353 0.92583 0.98366 1.19104 0.98426 0.92608 0.94909 1.21117 1.02287 0.94468 0.96575 1.17376 0.90404 0.89824 0.92492 1.19609 1.02958 1.15787 1.09489 0.90258 1.25908 0.94180 0.98202 0.96219 1.69830 1.01015 1.33132 1.36224 0.86359 0.78934 0.80883 0.80595 1.18937 1.20190 1.18688 1.21153 1.08170 1.00761 0.92379 1.17918 0.94512 0.93215 0.94265 1.20902 1.00748 0.99607 0.94334 1.20487 1.00189 0.95069 0.97889 1.20343 1.03268 0.98116 0.99208 1.20683 0.97535 0.98004 0.93205 1.18421 1.02504 0.96212 0.94689 0.91354 0.92254 0.89179 0.86241 0.86611 0.93108 0.92834 0.77791 0.85972 0.88086 0.90544 0.86131 0.87354 0.88170 0.88259 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.19 36.01 0.33 -1.76 16 2 C -0.06 -1.06 4.96 -104.26 -0.52 -1.58 16 3 C -0.13 -1.86 9.69 -39.63 -0.38 -2.24 16 4 C -0.11 -1.49 9.69 -39.51 -0.38 -1.87 16 5 C -0.11 -1.57 5.50 -104.68 -0.58 -2.15 16 6 C 0.12 1.41 7.17 36.01 0.26 1.67 16 7 O -0.57 -6.87 13.64 -35.23 -0.48 -7.35 16 8 C -0.08 -1.45 9.38 -39.22 -0.37 -1.82 16 9 C -0.02 -0.39 4.56 -104.92 -0.48 -0.87 16 10 C -0.05 -1.08 4.71 -103.13 -0.49 -1.57 16 11 C -0.13 -2.90 9.32 -39.05 -0.36 -3.26 16 12 C 0.10 2.57 5.55 -107.02 -0.59 1.98 16 13 C -0.45 -11.28 8.99 -37.82 -0.34 -11.62 16 14 H 0.08 1.89 7.91 -52.49 -0.41 1.47 16 15 C 0.07 1.78 5.09 -17.34 -0.09 1.69 16 16 N -0.78 -19.37 11.00 55.55 0.61 -18.76 16 17 Si 0.91 17.88 29.59 -169.99 -5.03 12.84 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 C -0.20 -5.20 8.38 -38.32 -0.32 -5.52 16 22 C 0.00 0.03 5.74 -106.89 -0.61 -0.58 16 23 C -0.14 -2.93 9.78 -39.33 -0.38 -3.31 16 24 C -0.12 -2.25 9.95 -39.94 -0.40 -2.65 16 25 C -0.19 -3.60 9.96 -39.82 -0.40 -4.00 16 26 C -0.08 -1.53 7.51 -39.61 -0.30 -1.83 16 27 C -0.12 -2.62 4.83 -104.66 -0.51 -3.13 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.09 1.69 4.31 -51.93 -0.22 1.47 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.38 2.50 9.12 45.56 0.42 2.91 16 36 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 39 H 0.12 3.18 6.17 -52.48 -0.32 2.86 16 40 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.10 1.99 6.34 -52.49 -0.33 1.66 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -28.48 356.46 -11.09 -39.57 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.66 Total: 12.73 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: -6.91 Total: -44.41 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.61 Total: -18.76 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.48 Total: -7.35 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.48 -11.09 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242670132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.829 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds