Wall clock time and date at job start Tue Mar 31 2020 12:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38017 * 120.06528 * 2 1 4 4 C 1.38318 * 120.12744 * 180.22942 * 3 2 1 5 5 C 1.38357 * 120.27031 * 359.78717 * 4 3 2 6 6 C 1.50702 * 119.93671 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46614 * 270.01809 * 6 5 4 8 8 C 1.37970 * 120.12911 * 359.97438 * 5 4 3 9 9 C 1.39418 * 120.06962 * 179.75954 * 2 1 3 10 10 C 1.48175 * 120.13079 * 0.03135 * 9 2 1 11 11 C 1.36679 * 120.33937 * 244.74335 * 10 9 2 12 12 C 1.41125 * 120.58867 * 179.97438 * 11 10 9 13 13 C 1.41220 * 119.49120 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99674 * 333.76278 * 13 12 11 15 15 C 1.39928 * 120.00207 * 153.76130 * 13 12 11 16 16 N 1.30836 * 120.00009 * 342.17119 * 15 13 12 17 17 Si 1.86801 * 120.00037 * 162.16812 * 15 13 12 18 18 H 1.48497 * 109.47072 * 59.99979 * 17 15 13 19 19 H 1.48502 * 109.47210 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46846 * 300.00132 * 17 15 13 21 21 C 1.39966 * 121.01945 * 359.67597 * 12 11 10 22 22 C 1.39888 * 120.10839 * 0.59917 * 21 12 11 23 23 C 1.40854 * 121.13593 * 179.70784 * 22 21 12 24 24 C 1.36186 * 119.60932 * 179.70427 * 23 22 21 25 25 C 1.39250 * 120.94006 * 359.97438 * 24 23 22 26 26 C 1.36538 * 120.97876 * 0.02562 * 25 24 23 27 27 C 1.39813 * 119.73759 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47058 * 270.23512 * 1 2 3 29 29 H 1.08996 * 109.47028 * 30.24156 * 1 2 3 30 30 H 1.09003 * 109.46711 * 150.23598 * 1 2 3 31 31 H 1.07994 * 119.93471 * 359.97280 * 3 2 1 32 32 H 1.08004 * 119.86126 * 179.76891 * 4 3 2 33 33 H 1.09000 * 109.46912 * 30.01458 * 6 5 4 34 34 H 1.08998 * 109.47396 * 150.01768 * 6 5 4 35 35 H 0.96696 * 113.99842 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.06334 * 180.02562 * 8 5 4 37 37 H 1.07993 * 119.70717 * 359.97431 * 11 10 9 38 38 H 0.96999 * 119.99666 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.93998 * 180.02562 * 21 12 11 40 40 H 1.08003 * 120.19910 * 359.70663 * 23 22 21 41 41 H 1.07999 * 119.53637 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.51042 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.13202 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1945 0.0000 4 6 3.5816 1.1960 -0.0048 5 6 4.2804 0.0018 -0.0052 6 6 5.7873 0.0122 -0.0110 7 8 6.2584 0.0133 -1.3601 8 6 3.6002 -1.1986 -0.0002 9 6 2.2056 -1.2065 0.0051 10 6 1.4692 -2.4923 0.0098 11 6 1.5623 -3.3374 1.0800 12 6 0.8628 -4.5630 1.0902 13 6 0.9761 -5.4188 2.2078 14 1 1.8597 -5.3831 2.8279 15 6 -0.0563 -6.3130 2.5119 16 7 -1.2483 -6.1333 2.0034 17 14 0.2673 -7.7633 3.6439 18 1 0.7135 -7.2662 4.9701 19 1 -0.9797 -8.5535 3.8049 20 1 1.3255 -8.6235 3.0560 21 6 0.0536 -4.9407 0.0125 22 6 -0.0630 -4.1058 -1.1038 23 6 -0.8664 -4.4673 -2.2029 24 6 -0.9624 -3.6280 -3.2711 25 6 -0.2775 -2.4158 -3.2930 26 6 0.5098 -2.0344 -2.2447 27 6 0.6332 -2.8696 -1.1302 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6585 2.1297 -0.0004 32 1 4.1184 2.1332 -0.0085 33 1 6.1464 0.9056 0.5000 34 1 6.1588 -0.8743 0.5028 35 1 7.2220 0.0203 -1.4403 36 1 4.1467 -2.1301 -0.0001 37 1 2.1767 -3.0648 1.9253 38 1 -1.9639 -6.7534 2.2139 39 1 -0.4743 -5.8826 0.0389 40 1 -1.4033 -5.4045 -2.1985 41 1 -1.5791 -3.9062 -4.1130 42 1 -0.3705 -1.7677 -4.1519 43 1 1.0352 -1.0914 -2.2763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242670132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:18 Heat of formation + Delta-G solvation = -15.687838 kcal Electronic energy + Delta-G solvation = -25594.754198 eV Core-core repulsion = 22146.744460 eV Total energy + Delta-G solvation = -3448.009738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.16465 -39.91469 -37.68247 -37.39887 -35.38803 -34.18685 -33.16596 -31.51594 -31.19681 -29.68501 -28.87050 -27.10304 -25.33108 -24.39200 -23.37951 -23.07214 -22.15351 -20.89553 -19.20462 -18.33497 -17.81666 -17.67523 -16.86246 -16.80781 -16.59145 -16.15716 -15.78469 -15.14410 -14.94718 -14.80273 -14.46074 -14.41376 -14.22276 -14.12494 -14.03621 -13.59391 -13.31218 -13.16414 -13.03795 -12.88693 -12.69522 -12.63546 -12.48890 -12.17737 -11.99734 -11.90635 -11.69072 -11.37586 -11.24803 -10.95442 -10.89699 -10.33052 -9.73037 -9.43979 -9.25023 -8.68113 -8.43218 -6.31624 -0.06895 0.34711 0.46952 0.58687 1.34457 1.39094 1.47876 1.54866 2.16355 2.29664 2.69867 3.02380 3.59169 3.72784 3.77182 3.98310 4.03787 4.11721 4.12595 4.27289 4.28648 4.32693 4.46757 4.54224 4.61148 4.67225 4.74113 4.78406 4.79392 4.88017 4.94309 4.97401 5.08225 5.17008 5.23579 5.29564 5.35085 5.44649 5.54021 5.61406 5.68096 5.74124 5.76982 5.85792 5.98588 6.06484 6.07525 6.25189 6.43187 6.64610 6.85957 6.94308 6.94374 8.28556 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.004442 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.123543 B = 6302.345288 C = 7694.513931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.122 4.122 4 C -0.099 4.099 5 C -0.109 4.109 6 C 0.121 3.879 7 O -0.589 6.589 8 C -0.101 4.101 9 C -0.051 4.051 10 C -0.033 4.033 11 C -0.154 4.154 12 C 0.079 3.921 13 C -0.488 4.488 14 H 0.079 0.921 15 C 0.035 3.965 16 N -0.814 5.814 17 Si 0.981 3.019 18 H -0.257 1.257 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.234 4.234 22 C -0.022 4.022 23 C -0.161 4.161 24 C -0.105 4.105 25 C -0.181 4.181 26 C -0.077 4.077 27 C -0.133 4.133 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 11.876 -3.736 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.044 3.956 7 O -0.398 6.398 8 C -0.119 4.119 9 C -0.051 4.051 10 C -0.033 4.033 11 C -0.173 4.173 12 C 0.077 3.923 13 C -0.517 4.517 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.439 5.439 17 Si 0.801 3.199 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.186 1.186 21 C -0.254 4.254 22 C -0.022 4.022 23 C -0.179 4.179 24 C -0.123 4.123 25 C -0.199 4.199 26 C -0.095 4.095 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.030 11.786 -3.835 14.249 hybrid contribution 0.348 -1.284 0.938 1.628 sum 7.378 10.501 -2.897 13.157 Atomic orbital electron populations 1.21014 0.91085 1.03739 1.02341 1.20164 0.96433 0.92263 0.98564 1.21245 0.94433 0.97457 1.00808 1.21352 0.94049 0.97971 0.98310 1.19817 0.95955 0.92833 1.02326 1.20998 0.89008 1.01856 0.83736 1.86533 1.28758 1.97802 1.26723 1.21159 0.92819 0.98219 0.99728 1.18745 0.93024 0.91868 1.01454 1.19413 0.96911 0.93334 0.93653 1.21158 1.03570 0.94766 0.97800 1.17691 0.90977 0.90854 0.92782 1.19859 1.03784 1.17717 1.10307 0.90269 1.26753 0.93473 1.00308 0.97558 1.69907 1.01893 1.34298 1.37806 0.85272 0.78934 0.77138 0.78534 1.18115 1.19162 1.18555 1.21042 1.09655 1.00875 0.93870 1.18217 0.95511 0.93837 0.94618 1.21063 1.01340 1.00730 0.94787 1.20911 0.99305 0.94261 0.97788 1.20838 1.01262 0.98142 0.99631 1.20834 0.97880 0.98079 0.92719 1.18738 1.02568 0.96155 0.95886 0.91872 0.89245 0.92008 0.82976 0.83028 0.89988 0.92415 0.75104 0.87173 0.87948 0.90060 0.88296 0.87107 0.84324 0.84359 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.19 71.24 0.65 -3.32 16 2 C -0.07 -2.40 4.96 -19.63 -0.10 -2.50 16 3 C -0.12 -3.11 9.69 22.24 0.22 -2.89 16 4 C -0.10 -2.37 9.69 22.32 0.22 -2.16 16 5 C -0.11 -3.01 5.50 -19.90 -0.11 -3.12 16 6 C 0.12 2.48 7.17 71.24 0.51 2.99 16 7 O -0.59 -12.63 13.64 -148.98 -2.03 -14.66 16 8 C -0.10 -3.48 9.38 22.50 0.21 -3.27 16 9 C -0.05 -1.93 4.56 -20.06 -0.09 -2.02 16 10 C -0.03 -1.49 4.71 -18.90 -0.09 -1.58 16 11 C -0.15 -7.69 9.32 22.61 0.21 -7.48 16 12 C 0.08 4.36 5.55 -21.42 -0.12 4.25 16 13 C -0.49 -26.40 8.99 23.41 0.21 -26.19 16 14 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 15 C 0.04 1.78 5.09 85.25 0.43 2.21 16 16 N -0.81 -43.24 11.00 21.82 0.24 -43.00 16 17 Si 0.98 38.27 29.59 68.60 2.03 40.30 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 19 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 C -0.23 -12.92 8.38 23.09 0.19 -12.73 16 22 C -0.02 -1.08 5.74 -21.33 -0.12 -1.20 16 23 C -0.16 -6.98 9.78 22.43 0.22 -6.76 16 24 C -0.10 -3.78 9.95 22.04 0.22 -3.56 16 25 C -0.18 -6.30 9.96 22.12 0.22 -6.08 16 26 C -0.08 -3.02 7.51 22.25 0.17 -2.85 16 27 C -0.13 -6.11 4.83 -19.89 -0.10 -6.21 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 30 H 0.06 2.32 4.31 -2.39 -0.01 2.31 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 34 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.40 4.14 9.12 -74.06 -0.68 3.47 16 36 H 0.11 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.10 5.73 6.17 -2.91 -0.02 5.72 16 40 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.12 4.28 6.34 -2.91 -0.02 4.26 16 Total: -1.00 -67.03 356.46 3.56 -63.47 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.37 Total: 38.35 kcal Atomic # 6 Polarization: -87.42 SS G_CDS: 2.96 Total: -84.46 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.24 Total: -43.00 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -2.03 Total: -14.66 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -67.03 3.56 -63.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242670132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.786 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds