Wall clock time and date at job start Tue Mar 31 2020 12:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35596 * 116.99522 * 2 1 4 4 C 1.39120 * 119.89179 * 0.02562 * 3 2 1 5 5 C 1.36426 * 120.44943 * 179.76125 * 4 3 2 6 6 C 1.40931 * 120.21558 * 0.47482 * 5 4 3 7 7 C 1.41254 * 120.11451 * 179.77998 * 6 5 4 8 8 H 1.08000 * 119.99834 * 334.25455 * 7 6 5 9 9 C 1.39848 * 120.00093 * 154.25128 * 7 6 5 10 10 N 1.30893 * 120.00110 * 343.06385 * 9 7 6 11 11 Si 1.86799 * 119.99782 * 163.05935 * 9 7 6 12 12 H 1.48499 * 109.47016 * 60.00335 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47263 * 300.00321 * 11 9 7 15 15 C 1.40571 * 119.77820 * 359.50953 * 6 5 4 16 16 C 1.38736 * 119.55757 * 0.24744 * 15 6 5 17 17 C 1.48070 * 120.11234 * 179.97438 * 16 15 6 18 18 C 1.38410 * 120.35246 * 269.72834 * 17 16 15 19 19 C 1.50700 * 119.65917 * 359.97438 * 18 17 16 20 20 C 1.39005 * 120.68069 * 179.79443 * 18 17 16 21 21 C 1.36231 * 121.14873 * 0.48037 * 20 18 17 22 22 C 1.40537 * 120.07120 * 359.74795 * 21 20 18 23 23 C 1.40577 * 121.18169 * 179.97438 * 22 21 20 24 24 C 1.36116 * 119.65533 * 180.02562 * 23 22 21 25 25 C 1.39320 * 120.96443 * 359.96373 * 24 23 22 26 26 C 1.36215 * 120.94182 * 0.03940 * 25 24 23 27 27 C 1.40231 * 119.67986 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47569 * 59.99991 * 1 2 3 29 29 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47552 * 299.99778 * 1 2 3 31 31 H 1.08001 * 119.77682 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.89400 * 180.25292 * 5 4 3 33 33 H 0.97001 * 119.99953 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.22309 * 180.22967 * 15 6 5 35 35 H 1.08997 * 109.46885 * 90.00534 * 19 18 17 36 36 H 1.09010 * 109.47023 * 210.00495 * 19 18 17 37 37 H 1.09000 * 109.47237 * 330.00117 * 19 18 17 38 38 H 1.08008 * 119.42797 * 180.22863 * 20 18 17 39 39 H 1.08006 * 119.96893 * 179.78002 * 21 20 18 40 40 H 1.08000 * 120.17174 * 0.03809 * 23 22 21 41 41 H 1.08009 * 119.51850 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.52796 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.15819 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2844 2.3735 0.0005 5 6 1.8918 3.5951 0.0054 6 6 3.2981 3.6880 -0.0001 7 6 3.9247 4.9539 0.0003 8 1 3.4076 5.8125 -0.4018 9 6 5.2147 5.0954 0.5216 10 7 5.7131 4.1658 1.2966 11 14 6.2265 6.6112 0.1116 12 1 5.5135 7.8250 0.5842 13 1 7.5483 6.5203 0.7824 14 1 6.4224 6.6930 -1.3582 15 6 4.0751 2.5165 -0.0002 16 6 3.4478 1.2791 -0.0001 17 6 4.2543 0.0374 -0.0009 18 6 4.6298 -0.5520 -1.1956 19 6 4.2131 0.0763 -2.5004 20 6 5.3905 -1.7154 -1.2042 21 6 5.7787 -2.3122 -0.0428 22 6 5.4156 -1.7504 1.1932 23 6 5.8029 -2.3470 2.4058 24 6 5.4336 -1.7766 3.5852 25 6 4.6763 -0.6074 3.6098 26 6 4.2837 -0.0028 2.4541 27 6 4.6455 -0.5621 1.2202 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.2063 2.3106 0.0005 32 1 1.2931 4.4940 0.0100 33 1 6.6080 4.2638 1.6578 34 1 5.1533 2.5794 -0.0007 35 1 4.9743 0.7877 -2.8205 36 1 4.0998 -0.6998 -3.2575 37 1 3.2639 0.5951 -2.3671 38 1 5.6754 -2.1562 -2.1482 39 1 6.3665 -3.2178 -0.0717 40 1 6.3907 -3.2530 2.4015 41 1 5.7321 -2.2370 4.5155 42 1 4.3965 -0.1744 4.5589 43 1 3.6965 0.9030 2.4880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242981130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:06 Heat of formation + Delta-G solvation = 15.412496 kcal Electronic energy + Delta-G solvation = -26364.817541 eV Core-core repulsion = 22918.156415 eV Total energy + Delta-G solvation = -3446.661126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.04735 -38.64790 -36.56382 -36.12218 -33.56135 -32.73867 -31.12997 -29.97166 -29.12866 -28.30790 -26.86928 -26.14246 -24.64209 -22.93882 -21.97725 -21.44081 -20.73199 -19.72255 -17.43006 -16.87798 -16.59277 -16.27961 -15.49202 -15.31235 -14.81758 -14.75930 -14.18667 -13.88514 -13.47253 -13.36157 -13.14825 -13.11280 -12.61396 -12.57212 -12.43714 -12.16271 -12.02484 -11.73454 -11.57778 -11.25165 -11.14727 -11.08290 -10.83573 -10.69073 -10.51355 -10.49173 -10.45548 -10.03137 -9.87168 -9.41787 -9.20039 -9.04224 -8.01471 -7.58081 -7.18935 -7.05278 -6.72611 -4.29091 1.04131 1.51952 2.57556 2.66711 2.82364 3.07860 3.09485 3.17933 3.45853 3.94193 4.31580 4.54397 4.62482 5.05380 5.26153 5.28498 5.39478 5.46126 5.55289 5.62802 5.63223 5.69462 5.75730 5.85043 5.87375 5.91750 6.07583 6.09173 6.18895 6.20902 6.42599 6.47890 6.54491 6.60389 6.74009 6.80051 6.91649 6.96448 7.00287 7.05311 7.14426 7.24809 7.33595 7.37744 7.47450 7.52957 7.71958 7.92356 8.14288 8.41484 8.59045 8.86488 8.91546 10.21002 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.005496 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.052949 B = 5093.039929 C = 5986.276015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.012 3.988 4 C -0.170 4.170 5 C -0.188 4.188 6 C 0.088 3.912 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.905 3.095 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.264 1.264 15 C -0.111 4.111 16 C -0.063 4.063 17 C 0.022 3.978 18 C -0.089 4.089 19 C -0.107 4.107 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.052 4.052 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.069 4.069 27 C -0.036 4.036 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.281 0.719 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -9.518 -0.616 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.239 6.239 3 C -0.031 4.031 4 C -0.189 4.189 5 C -0.208 4.208 6 C 0.085 3.915 7 C -0.494 4.494 8 H 0.094 0.906 9 C -0.141 4.141 10 N -0.422 5.422 11 Si 0.730 3.270 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.130 4.130 16 C -0.064 4.064 17 C 0.022 3.978 18 C -0.089 4.089 19 C -0.164 4.164 20 C -0.122 4.122 21 C -0.146 4.146 22 C -0.052 4.052 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.156 4.156 26 C -0.087 4.087 27 C -0.036 4.036 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.759 -9.748 -0.468 9.789 hybrid contribution 0.238 0.905 0.025 0.936 sum -0.521 -8.843 -0.442 8.870 Atomic orbital electron populations 1.22710 0.81172 1.01705 1.00212 1.85894 1.18849 1.28250 1.90863 1.18510 0.90555 0.83055 1.10998 1.20351 0.97418 0.92831 1.08269 1.20637 0.94855 0.95094 1.10216 1.17473 0.90496 0.93257 0.90236 1.19384 0.99047 0.95016 1.35940 0.90576 1.25832 0.97862 0.97697 0.92722 1.69803 1.16618 1.33440 1.22316 0.86420 0.78873 0.81891 0.79862 1.19119 1.20391 1.18911 1.21273 0.99882 0.88914 1.02945 1.17697 0.88689 0.91944 1.08057 1.18772 0.94634 0.93357 0.91085 1.19873 0.98646 0.95389 0.95026 1.20724 1.02428 0.99931 0.93318 1.20572 0.98261 0.95584 0.97825 1.20808 1.01926 1.00204 0.91711 1.17984 0.98518 0.95033 0.93682 1.20861 1.01263 0.99969 0.91865 1.20724 0.98892 0.96314 0.97588 1.20774 1.00096 0.96463 0.98240 1.21156 0.97278 0.98906 0.91327 1.18078 0.97668 0.94312 0.93506 0.93992 0.90116 0.93991 0.88471 0.88658 0.90813 0.85455 0.91525 0.92620 0.90828 0.86624 0.86423 0.86386 0.86785 0.86574 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.32 -6.59 9.93 -18.49 -0.18 -6.77 16 3 C 0.01 0.27 6.38 -38.40 -0.25 0.03 16 4 C -0.17 -3.67 8.95 -39.91 -0.36 -4.03 16 5 C -0.19 -4.42 9.72 -39.22 -0.38 -4.80 16 6 C 0.09 2.24 5.56 -106.85 -0.59 1.64 16 7 C -0.46 -11.91 9.04 -37.83 -0.34 -12.25 16 8 H 0.08 1.88 7.90 -52.49 -0.41 1.47 16 9 C 0.08 1.87 5.14 -17.35 -0.09 1.78 16 10 N -0.80 -20.23 10.96 55.54 0.61 -19.62 16 11 Si 0.90 18.53 29.59 -169.99 -5.03 13.50 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 14 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 15 C -0.11 -2.76 8.41 -38.52 -0.32 -3.09 16 16 C -0.06 -1.44 2.51 -104.82 -0.26 -1.70 16 17 C 0.02 0.46 4.85 -104.54 -0.51 -0.05 16 18 C -0.09 -1.68 5.91 -104.27 -0.62 -2.30 16 19 C -0.11 -1.84 9.59 36.01 0.35 -1.50 16 20 C -0.10 -1.69 9.57 -40.02 -0.38 -2.08 16 21 C -0.13 -2.04 9.75 -39.44 -0.38 -2.42 16 22 C -0.05 -0.93 5.74 -106.86 -0.61 -1.54 16 23 C -0.12 -1.86 9.77 -39.46 -0.39 -2.25 16 24 C -0.12 -1.76 9.95 -39.94 -0.40 -2.16 16 25 C -0.14 -2.33 9.95 -39.91 -0.40 -2.73 16 26 C -0.07 -1.38 9.39 -39.56 -0.37 -1.75 16 27 C -0.04 -0.73 5.76 -106.60 -0.61 -1.34 16 28 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.62 7.65 -51.92 -0.40 0.22 16 31 H 0.10 1.83 6.25 -52.49 -0.33 1.50 16 32 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.13 3.38 6.19 -52.49 -0.32 3.06 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.79 8.08 -51.92 -0.42 0.37 16 37 H 0.07 1.40 6.76 -51.93 -0.35 1.05 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 43 H 0.13 2.86 7.17 -52.49 -0.38 2.49 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -27.94 358.13 -10.66 -38.60 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.53 Total: 9.84 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: -5.93 Total: -40.95 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.18 Total: -6.77 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.94 -10.66 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242981130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.014 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds