Wall clock time and date at job start Tue Mar 31 2020 12:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35596 * 116.99522 * 2 1 4 4 C 1.39120 * 119.89179 * 0.02562 * 3 2 1 5 5 C 1.36426 * 120.44943 * 179.76125 * 4 3 2 6 6 C 1.40931 * 120.21558 * 0.47482 * 5 4 3 7 7 C 1.41254 * 120.11451 * 179.77998 * 6 5 4 8 8 H 1.08000 * 119.99834 * 334.25455 * 7 6 5 9 9 C 1.39848 * 120.00093 * 154.25128 * 7 6 5 10 10 N 1.30893 * 120.00110 * 343.06385 * 9 7 6 11 11 Si 1.86799 * 119.99782 * 163.05935 * 9 7 6 12 12 H 1.48499 * 109.47016 * 60.00335 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47263 * 300.00321 * 11 9 7 15 15 C 1.40571 * 119.77820 * 359.50953 * 6 5 4 16 16 C 1.38736 * 119.55757 * 0.24744 * 15 6 5 17 17 C 1.48070 * 120.11234 * 179.97438 * 16 15 6 18 18 C 1.38410 * 120.35246 * 269.72834 * 17 16 15 19 19 C 1.50700 * 119.65917 * 359.97438 * 18 17 16 20 20 C 1.39005 * 120.68069 * 179.79443 * 18 17 16 21 21 C 1.36231 * 121.14873 * 0.48037 * 20 18 17 22 22 C 1.40537 * 120.07120 * 359.74795 * 21 20 18 23 23 C 1.40577 * 121.18169 * 179.97438 * 22 21 20 24 24 C 1.36116 * 119.65533 * 180.02562 * 23 22 21 25 25 C 1.39320 * 120.96443 * 359.96373 * 24 23 22 26 26 C 1.36215 * 120.94182 * 0.03940 * 25 24 23 27 27 C 1.40231 * 119.67986 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47569 * 59.99991 * 1 2 3 29 29 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47552 * 299.99778 * 1 2 3 31 31 H 1.08001 * 119.77682 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.89400 * 180.25292 * 5 4 3 33 33 H 0.97001 * 119.99953 * 179.97438 * 10 9 7 34 34 H 1.08000 * 120.22309 * 180.22967 * 15 6 5 35 35 H 1.08997 * 109.46885 * 90.00534 * 19 18 17 36 36 H 1.09010 * 109.47023 * 210.00495 * 19 18 17 37 37 H 1.09000 * 109.47237 * 330.00117 * 19 18 17 38 38 H 1.08008 * 119.42797 * 180.22863 * 20 18 17 39 39 H 1.08006 * 119.96893 * 179.78002 * 21 20 18 40 40 H 1.08000 * 120.17174 * 0.03809 * 23 22 21 41 41 H 1.08009 * 119.51850 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.52796 * 180.02562 * 25 24 23 43 43 H 1.07994 * 120.15819 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2844 2.3735 0.0005 5 6 1.8918 3.5951 0.0054 6 6 3.2981 3.6880 -0.0001 7 6 3.9247 4.9539 0.0003 8 1 3.4076 5.8125 -0.4018 9 6 5.2147 5.0954 0.5216 10 7 5.7131 4.1658 1.2966 11 14 6.2265 6.6112 0.1116 12 1 5.5135 7.8250 0.5842 13 1 7.5483 6.5203 0.7824 14 1 6.4224 6.6930 -1.3582 15 6 4.0751 2.5165 -0.0002 16 6 3.4478 1.2791 -0.0001 17 6 4.2543 0.0374 -0.0009 18 6 4.6298 -0.5520 -1.1956 19 6 4.2131 0.0763 -2.5004 20 6 5.3905 -1.7154 -1.2042 21 6 5.7787 -2.3122 -0.0428 22 6 5.4156 -1.7504 1.1932 23 6 5.8029 -2.3470 2.4058 24 6 5.4336 -1.7766 3.5852 25 6 4.6763 -0.6074 3.6098 26 6 4.2837 -0.0028 2.4541 27 6 4.6455 -0.5621 1.2202 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.2063 2.3106 0.0005 32 1 1.2931 4.4940 0.0100 33 1 6.6080 4.2638 1.6578 34 1 5.1533 2.5794 -0.0007 35 1 4.9743 0.7877 -2.8205 36 1 4.0998 -0.6998 -3.2575 37 1 3.2639 0.5951 -2.3671 38 1 5.6754 -2.1562 -2.1482 39 1 6.3665 -3.2178 -0.0717 40 1 6.3907 -3.2530 2.4015 41 1 5.7321 -2.2370 4.5155 42 1 4.3965 -0.1744 4.5589 43 1 3.6965 0.9030 2.4880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242981130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:05 Heat of formation + Delta-G solvation = 3.958280 kcal Electronic energy + Delta-G solvation = -26365.314233 eV Core-core repulsion = 22918.156415 eV Total energy + Delta-G solvation = -3447.157819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45245 -40.23730 -38.15234 -37.57752 -35.29888 -34.26717 -32.47187 -31.45887 -30.96103 -29.72597 -28.32092 -27.55911 -26.42493 -24.31631 -23.47621 -22.75765 -22.50426 -21.29452 -19.14986 -18.54787 -17.94687 -17.68306 -17.08951 -16.81601 -16.40048 -16.26055 -15.73842 -15.13968 -14.96369 -14.81979 -14.80336 -14.42947 -14.20142 -14.07473 -13.79166 -13.78737 -13.50332 -13.22472 -13.03253 -12.82042 -12.75291 -12.53367 -12.45440 -12.34442 -11.89509 -11.84265 -11.77747 -11.71526 -11.57332 -11.10289 -10.86923 -10.58600 -9.38481 -9.33219 -8.87683 -8.58525 -8.51977 -6.22644 -0.29183 0.19092 0.87477 1.01410 1.22405 1.37143 1.47673 1.51263 2.15311 2.21435 2.69928 2.82140 3.27129 3.64519 3.75809 3.99047 4.02974 4.09942 4.21836 4.27921 4.32539 4.43562 4.45541 4.47223 4.59414 4.63290 4.64526 4.72495 4.79863 4.81977 4.93361 5.06644 5.10256 5.19658 5.24565 5.26604 5.29614 5.38477 5.45953 5.56007 5.58316 5.65200 5.72374 5.86870 5.90662 6.04286 6.08247 6.23270 6.27299 6.57565 6.81682 6.96253 7.09553 8.37837 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.005496 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.052949 B = 5093.039929 C = 5986.276015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C 0.017 3.983 4 C -0.171 4.171 5 C -0.202 4.202 6 C 0.057 3.943 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.036 3.964 10 N -0.829 5.829 11 Si 0.975 3.025 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.261 1.261 15 C -0.129 4.129 16 C -0.055 4.055 17 C -0.027 4.027 18 C -0.095 4.095 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.075 4.075 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.113 4.113 27 C -0.057 4.057 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.284 0.716 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -12.543 -0.688 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.028 4.028 4 C -0.189 4.189 5 C -0.222 4.222 6 C 0.055 3.945 7 C -0.530 4.530 8 H 0.093 0.907 9 C -0.178 4.178 10 N -0.456 5.456 11 Si 0.797 3.203 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.186 1.186 15 C -0.148 4.148 16 C -0.055 4.055 17 C -0.027 4.027 18 C -0.095 4.095 19 C -0.160 4.160 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.075 4.075 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.131 4.131 27 C -0.057 4.057 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.173 0.827 42 H 0.149 0.851 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.113 -12.781 -0.541 12.793 hybrid contribution -0.148 1.616 0.096 1.626 sum -0.035 -11.165 -0.444 11.173 Atomic orbital electron populations 1.23060 0.78492 1.04150 1.00997 1.85876 1.21621 1.27213 1.90590 1.18678 0.90742 0.83917 1.09422 1.20638 0.99004 0.92051 1.07226 1.20810 0.94341 0.96305 1.10749 1.17810 0.91699 0.93712 0.91236 1.19621 1.00503 0.95196 1.37640 0.90684 1.26643 0.98448 1.00736 0.91990 1.69908 1.16978 1.35390 1.23283 0.85353 0.77312 0.78099 0.79576 1.18324 1.19583 1.18570 1.21050 0.98612 0.90069 1.05088 1.17849 0.89583 0.92246 1.05867 1.18866 0.97202 0.93817 0.92776 1.20201 0.98533 0.96266 0.94504 1.20702 1.00786 1.00623 0.93874 1.20929 0.97743 0.94607 0.99891 1.21317 1.00391 1.00783 0.90501 1.18393 0.98647 0.94480 0.95968 1.21367 0.99927 1.00604 0.90676 1.21132 0.97947 0.95272 0.99535 1.21080 0.99019 0.96880 0.97671 1.20962 0.99953 0.99012 0.93161 1.18284 0.98699 0.95746 0.92987 0.92818 0.86975 0.93432 0.85439 0.87794 0.90591 0.88084 0.91880 0.89209 0.93528 0.82960 0.82017 0.82075 0.82709 0.85069 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.80 113.37 1.11 1.94 16 2 O -0.34 -13.93 9.93 -89.06 -0.88 -14.82 16 3 C 0.02 0.76 6.38 23.04 0.15 0.91 16 4 C -0.17 -7.63 8.95 22.06 0.20 -7.43 16 5 C -0.20 -10.04 9.72 22.51 0.22 -9.82 16 6 C 0.06 3.16 5.56 -21.31 -0.12 3.04 16 7 C -0.50 -27.38 9.04 23.40 0.21 -27.16 16 8 H 0.08 3.95 7.90 -2.91 -0.02 3.92 16 9 C 0.04 1.85 5.14 85.22 0.44 2.29 16 10 N -0.83 -45.01 10.96 21.81 0.24 -44.77 16 11 Si 0.98 39.49 29.59 68.60 2.03 41.52 16 12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 14 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 15 C -0.13 -6.97 8.41 22.96 0.19 -6.78 16 16 C -0.05 -2.67 2.51 -19.99 -0.05 -2.72 16 17 C -0.03 -1.18 4.85 -19.81 -0.10 -1.27 16 18 C -0.10 -3.59 5.91 -19.64 -0.12 -3.71 16 19 C -0.10 -3.58 9.59 71.24 0.68 -2.89 16 20 C -0.11 -3.41 9.57 21.99 0.21 -3.20 16 21 C -0.11 -3.16 9.75 22.36 0.22 -2.94 16 22 C -0.07 -2.53 5.74 -21.31 -0.12 -2.65 16 23 C -0.11 -2.90 9.77 22.35 0.22 -2.69 16 24 C -0.12 -3.27 9.95 22.04 0.22 -3.05 16 25 C -0.13 -4.34 9.95 22.06 0.22 -4.12 16 26 C -0.11 -4.79 9.39 22.28 0.21 -4.58 16 27 C -0.06 -2.40 5.76 -21.14 -0.12 -2.52 16 28 H 0.05 1.47 7.65 -2.38 -0.02 1.46 16 29 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.05 1.36 7.65 -2.38 -0.02 1.34 16 31 H 0.13 4.78 6.25 -2.91 -0.02 4.76 16 32 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 34 H 0.10 5.92 6.19 -2.91 -0.02 5.90 16 35 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.41 8.08 -2.38 -0.02 2.39 16 37 H 0.05 1.83 6.76 -2.39 -0.02 1.82 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.09 4.42 7.17 -2.91 -0.02 4.40 16 Total: -1.00 -67.54 358.13 6.28 -61.27 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 1.02 Total: 36.17 kcal Atomic # 6 Polarization: -83.24 SS G_CDS: 3.87 Total: -79.37 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.24 Total: -44.77 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.88 Total: -14.82 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -67.54 6.28 -61.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242981130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.228 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds