Wall clock time and date at job start Tue Mar 31 2020 12:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35584 * 116.99834 * 2 1 4 4 C 1.38559 * 120.07345 * 359.97438 * 3 2 1 5 5 C 1.37980 * 120.32167 * 180.02562 * 4 3 2 6 6 C 1.40062 * 120.46083 * 359.97438 * 5 4 3 7 7 C 1.48103 * 119.93517 * 180.02562 * 6 5 4 8 8 C 1.38392 * 120.35452 * 114.72178 * 7 6 5 9 9 C 1.50704 * 119.65791 * 359.97438 * 8 7 6 10 10 C 1.39014 * 120.68443 * 179.81422 * 8 7 6 11 11 C 1.36224 * 121.14453 * 0.42081 * 10 8 7 12 12 C 1.40539 * 120.06892 * 359.81317 * 11 10 8 13 13 C 1.40583 * 121.17704 * 179.91417 * 12 11 10 14 14 C 1.36117 * 119.65254 * 180.02562 * 13 12 11 15 15 C 1.39321 * 120.96213 * 0.04454 * 14 13 12 16 16 C 1.36214 * 120.94730 * 359.97437 * 15 14 13 17 17 C 1.40230 * 119.67718 * 0.02562 * 16 15 14 18 18 C 1.38756 * 120.13141 * 0.02562 * 6 5 4 19 19 C 1.40477 * 119.68032 * 359.97438 * 18 6 5 20 20 C 1.41187 * 120.22297 * 180.02562 * 19 18 6 21 21 H 1.07996 * 120.00079 * 154.43644 * 20 19 18 22 22 C 1.39895 * 120.00041 * 334.42875 * 20 19 18 23 23 N 1.30881 * 120.00157 * 343.17719 * 22 20 19 24 24 Si 1.86805 * 119.99862 * 163.17397 * 22 20 19 25 25 H 1.48499 * 109.46987 * 60.00329 * 24 22 20 26 26 H 1.48499 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47191 * 300.00358 * 24 22 20 28 28 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46644 * 299.99884 * 1 2 3 30 30 H 1.08999 * 109.47276 * 60.00155 * 1 2 3 31 31 H 1.07997 * 119.83444 * 359.74998 * 4 3 2 32 32 H 1.07995 * 119.76690 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46680 * 89.99614 * 9 8 7 34 34 H 1.08996 * 109.47453 * 209.99612 * 9 8 7 35 35 H 1.08999 * 109.47178 * 330.00475 * 9 8 7 36 36 H 1.08006 * 119.42241 * 180.23495 * 10 8 7 37 37 H 1.07998 * 119.96460 * 179.84399 * 11 10 8 38 38 H 1.07997 * 120.16966 * 0.05450 * 13 12 11 39 39 H 1.08002 * 119.51656 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.53052 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.16010 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.15574 * 179.97438 * 18 6 5 43 43 H 0.97001 * 119.99917 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2914 2.3711 -0.0005 5 6 1.9124 3.6032 -0.0011 6 6 3.3101 3.6938 -0.0005 7 6 3.9646 5.0224 -0.0005 8 6 4.7212 5.4293 1.0844 9 6 4.8771 4.5129 2.2706 10 6 5.3416 6.6733 1.0901 11 6 5.2167 7.5278 0.0365 12 6 4.4536 7.1571 -1.0840 13 6 4.3076 8.0213 -2.1832 14 6 3.5609 7.6309 -3.2523 15 6 2.9367 6.3856 -3.2741 16 6 3.0565 5.5235 -2.2263 17 6 3.8180 5.8917 -1.1078 18 6 4.0829 2.5414 0.0000 19 6 3.4565 1.2839 0.0005 20 6 4.2317 0.1039 0.0016 21 1 3.8228 -0.8104 0.4056 22 6 5.5293 0.1189 -0.5208 23 7 5.9114 1.1018 -1.2959 24 14 6.7168 -1.2639 -0.1118 25 1 6.1549 -2.5548 -0.5842 26 1 8.0175 -1.0144 -0.7836 27 1 6.9223 -1.3217 1.3577 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2130 2.3128 -0.0050 32 1 1.3166 4.5039 -0.0019 33 1 5.7522 3.8789 2.1273 34 1 5.0035 5.1076 3.1752 35 1 3.9885 3.8891 2.3670 36 1 5.9305 6.9687 1.9460 37 1 5.7049 8.4907 0.0621 38 1 4.7858 8.9896 -2.1796 39 1 3.4506 8.2963 -4.0957 40 1 2.3493 6.0995 -4.1341 41 1 2.5675 4.5611 -2.2568 42 1 5.1606 2.6108 0.0000 43 1 6.8113 1.1124 -1.6578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242981502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:55 Heat of formation + Delta-G solvation = 14.543640 kcal Electronic energy + Delta-G solvation = -25954.951320 eV Core-core repulsion = 22508.252517 eV Total energy + Delta-G solvation = -3446.698803 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.09263 -38.61233 -36.78513 -35.83667 -33.86318 -32.47445 -31.20347 -29.88303 -29.61228 -27.92868 -26.66761 -26.07535 -25.05392 -22.95985 -21.76270 -21.52605 -20.97803 -19.59387 -17.48948 -16.81432 -16.60540 -16.22329 -15.62299 -15.26248 -14.70709 -14.58551 -14.34676 -13.96779 -13.54509 -13.43153 -13.23860 -12.99563 -12.75975 -12.51114 -12.39256 -12.37365 -11.82951 -11.73445 -11.55202 -11.25784 -11.18406 -11.11264 -10.91058 -10.60252 -10.59594 -10.49484 -10.47023 -9.84302 -9.79435 -9.57230 -9.27911 -9.14241 -8.10745 -7.54031 -7.39877 -6.86675 -6.66908 -4.26405 0.93123 1.42213 2.38550 2.74713 2.87053 3.09462 3.12301 3.18968 3.39296 3.96655 4.46619 4.50960 4.60094 4.98152 5.18414 5.21575 5.32889 5.39825 5.52330 5.57967 5.69188 5.73279 5.77944 5.80002 5.83627 5.95268 6.04996 6.10183 6.17489 6.23374 6.29368 6.38341 6.45886 6.55124 6.63382 6.74038 6.82364 6.86450 6.94393 7.06337 7.15460 7.23838 7.28158 7.35766 7.42778 7.64401 7.69952 7.94990 8.15343 8.35721 8.66785 8.83018 9.02642 10.21683 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.004848 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.077275 B = 5774.335685 C = 6677.882392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.019 3.981 4 C -0.179 4.179 5 C -0.190 4.190 6 C -0.069 4.069 7 C 0.011 3.989 8 C -0.091 4.091 9 C -0.110 4.110 10 C -0.102 4.102 11 C -0.130 4.130 12 C -0.052 4.052 13 C -0.120 4.120 14 C -0.118 4.118 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.042 4.042 18 C -0.117 4.117 19 C 0.096 3.904 20 C -0.446 4.446 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.795 5.795 24 Si 0.907 3.093 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 8.842 0.827 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.026 4.026 4 C -0.198 4.198 5 C -0.210 4.210 6 C -0.070 4.070 7 C 0.011 3.989 8 C -0.091 4.091 9 C -0.166 4.166 10 C -0.120 4.120 11 C -0.148 4.148 12 C -0.052 4.052 13 C -0.138 4.138 14 C -0.136 4.136 15 C -0.156 4.156 16 C -0.097 4.097 17 C -0.042 4.042 18 C -0.137 4.137 19 C 0.093 3.907 20 C -0.475 4.475 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.421 5.421 24 Si 0.732 3.268 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.189 1.189 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.153 8.720 0.678 9.007 hybrid contribution 0.301 -0.334 -0.069 0.455 sum -1.852 8.386 0.609 8.610 Atomic orbital electron populations 1.22740 0.81718 1.01751 0.99941 1.85958 1.18230 1.28323 1.90068 1.19346 0.92377 0.82593 1.08276 1.20520 0.97411 0.92670 1.09225 1.20086 0.92663 0.95297 1.12956 1.18254 0.92699 0.90494 1.05533 1.19005 0.95010 0.93147 0.91780 1.19928 0.98044 0.95000 0.96172 1.20778 1.03488 0.98253 0.94085 1.20612 0.99286 0.93750 0.98390 1.20819 1.00547 0.99707 0.93740 1.18004 0.98294 0.93896 0.94987 1.20893 1.00198 0.98999 0.93668 1.20741 0.98133 0.96588 0.98167 1.20800 1.01341 0.94521 0.98912 1.21259 0.96429 0.99735 0.92240 1.18102 0.98029 0.93266 0.94781 1.21147 0.99338 0.89191 1.03990 1.16952 0.87245 0.93867 0.92637 1.19357 0.96992 0.96677 1.34511 0.90007 1.25869 0.98764 0.96900 0.92794 1.69821 1.19382 1.30685 1.22223 0.86374 0.78996 0.81583 0.79855 1.19020 1.20437 1.18852 0.90040 0.94211 0.94127 0.88453 0.89099 0.91192 0.92685 0.90612 0.86511 0.86355 0.86296 0.86706 0.86508 0.84791 0.85461 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.08 9.77 -18.45 -0.18 -7.26 16 3 C 0.02 0.45 6.72 -38.26 -0.26 0.19 16 4 C -0.18 -3.90 9.01 -39.56 -0.36 -4.25 16 5 C -0.19 -4.10 8.42 -38.99 -0.33 -4.43 16 6 C -0.07 -1.55 3.27 -104.97 -0.34 -1.89 16 7 C 0.01 0.22 5.33 -104.54 -0.56 -0.34 16 8 C -0.09 -1.67 5.90 -104.28 -0.61 -2.28 16 9 C -0.11 -1.86 9.00 36.01 0.32 -1.54 16 10 C -0.10 -1.60 9.57 -40.02 -0.38 -1.98 16 11 C -0.13 -1.97 9.75 -39.44 -0.38 -2.36 16 12 C -0.05 -0.88 5.74 -106.85 -0.61 -1.49 16 13 C -0.12 -1.73 9.77 -39.46 -0.39 -2.11 16 14 C -0.12 -1.65 9.95 -39.94 -0.40 -2.05 16 15 C -0.14 -2.14 9.95 -39.91 -0.40 -2.54 16 16 C -0.08 -1.46 9.14 -39.56 -0.36 -1.82 16 17 C -0.04 -0.80 5.75 -106.60 -0.61 -1.42 16 18 C -0.12 -2.90 7.39 -38.55 -0.28 -3.19 16 19 C 0.10 2.50 5.57 -106.73 -0.59 1.90 16 20 C -0.45 -11.79 8.70 -37.84 -0.33 -12.12 16 21 H 0.08 2.16 7.65 -52.49 -0.40 1.75 16 22 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 23 N -0.80 -20.43 10.97 55.55 0.61 -19.82 16 24 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 1.41 6.87 -51.93 -0.36 1.06 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.13 2.65 6.39 -52.49 -0.34 2.31 16 42 H 0.13 3.33 6.20 -52.49 -0.33 3.00 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -28.34 355.24 -10.70 -39.05 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.48 Total: 9.27 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: -5.98 Total: -40.38 kcal Atomic # 7 Polarization: -20.43 SS G_CDS: 0.61 Total: -19.82 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.18 Total: -7.26 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.34 -10.70 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242981502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.591 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds