Wall clock time and date at job start Tue Mar 31 2020 12:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35584 * 116.99834 * 2 1 4 4 C 1.38559 * 120.07345 * 359.97438 * 3 2 1 5 5 C 1.37980 * 120.32167 * 180.02562 * 4 3 2 6 6 C 1.40062 * 120.46083 * 359.97438 * 5 4 3 7 7 C 1.48103 * 119.93517 * 180.02562 * 6 5 4 8 8 C 1.38392 * 120.35452 * 114.72178 * 7 6 5 9 9 C 1.50704 * 119.65791 * 359.97438 * 8 7 6 10 10 C 1.39014 * 120.68443 * 179.81422 * 8 7 6 11 11 C 1.36224 * 121.14453 * 0.42081 * 10 8 7 12 12 C 1.40539 * 120.06892 * 359.81317 * 11 10 8 13 13 C 1.40583 * 121.17704 * 179.91417 * 12 11 10 14 14 C 1.36117 * 119.65254 * 180.02562 * 13 12 11 15 15 C 1.39321 * 120.96213 * 0.04454 * 14 13 12 16 16 C 1.36214 * 120.94730 * 359.97437 * 15 14 13 17 17 C 1.40230 * 119.67718 * 0.02562 * 16 15 14 18 18 C 1.38756 * 120.13141 * 0.02562 * 6 5 4 19 19 C 1.40477 * 119.68032 * 359.97438 * 18 6 5 20 20 C 1.41187 * 120.22297 * 180.02562 * 19 18 6 21 21 H 1.07996 * 120.00079 * 154.43644 * 20 19 18 22 22 C 1.39895 * 120.00041 * 334.42875 * 20 19 18 23 23 N 1.30881 * 120.00157 * 343.17719 * 22 20 19 24 24 Si 1.86805 * 119.99862 * 163.17397 * 22 20 19 25 25 H 1.48499 * 109.46987 * 60.00329 * 24 22 20 26 26 H 1.48499 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47191 * 300.00358 * 24 22 20 28 28 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46644 * 299.99884 * 1 2 3 30 30 H 1.08999 * 109.47276 * 60.00155 * 1 2 3 31 31 H 1.07997 * 119.83444 * 359.74998 * 4 3 2 32 32 H 1.07995 * 119.76690 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46680 * 89.99614 * 9 8 7 34 34 H 1.08996 * 109.47453 * 209.99612 * 9 8 7 35 35 H 1.08999 * 109.47178 * 330.00475 * 9 8 7 36 36 H 1.08006 * 119.42241 * 180.23495 * 10 8 7 37 37 H 1.07998 * 119.96460 * 179.84399 * 11 10 8 38 38 H 1.07997 * 120.16966 * 0.05450 * 13 12 11 39 39 H 1.08002 * 119.51656 * 180.02562 * 14 13 12 40 40 H 1.08004 * 119.53052 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.16010 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.15574 * 179.97438 * 18 6 5 43 43 H 0.97001 * 119.99917 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2914 2.3711 -0.0005 5 6 1.9124 3.6032 -0.0011 6 6 3.3101 3.6938 -0.0005 7 6 3.9646 5.0224 -0.0005 8 6 4.7212 5.4293 1.0844 9 6 4.8771 4.5129 2.2706 10 6 5.3416 6.6733 1.0901 11 6 5.2167 7.5278 0.0365 12 6 4.4536 7.1571 -1.0840 13 6 4.3076 8.0213 -2.1832 14 6 3.5609 7.6309 -3.2523 15 6 2.9367 6.3856 -3.2741 16 6 3.0565 5.5235 -2.2263 17 6 3.8180 5.8917 -1.1078 18 6 4.0829 2.5414 0.0000 19 6 3.4565 1.2839 0.0005 20 6 4.2317 0.1039 0.0016 21 1 3.8228 -0.8104 0.4056 22 6 5.5293 0.1189 -0.5208 23 7 5.9114 1.1018 -1.2959 24 14 6.7168 -1.2639 -0.1118 25 1 6.1549 -2.5548 -0.5842 26 1 8.0175 -1.0144 -0.7836 27 1 6.9223 -1.3217 1.3577 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2130 2.3128 -0.0050 32 1 1.3166 4.5039 -0.0019 33 1 5.7522 3.8789 2.1273 34 1 5.0035 5.1076 3.1752 35 1 3.9885 3.8891 2.3670 36 1 5.9305 6.9687 1.9460 37 1 5.7049 8.4907 0.0621 38 1 4.7858 8.9896 -2.1796 39 1 3.4506 8.2963 -4.0957 40 1 2.3493 6.0995 -4.1341 41 1 2.5675 4.5611 -2.2568 42 1 5.1606 2.6108 0.0000 43 1 6.8113 1.1124 -1.6578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242981502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:54 Heat of formation + Delta-G solvation = 2.613261 kcal Electronic energy + Delta-G solvation = -25955.468660 eV Core-core repulsion = 22508.252517 eV Total energy + Delta-G solvation = -3447.216143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.41469 -40.29835 -38.24858 -37.32196 -35.64991 -33.90420 -32.50976 -31.65031 -31.03753 -29.40819 -28.11522 -27.56632 -26.82510 -24.23834 -23.20988 -22.88785 -22.68620 -21.15112 -19.24801 -18.34282 -18.02723 -17.64450 -17.15041 -16.73245 -16.34597 -16.21322 -15.80761 -15.16716 -15.07445 -14.84709 -14.55191 -14.46150 -14.41044 -14.07800 -13.80305 -13.66141 -13.43826 -13.20979 -13.03896 -12.85853 -12.75758 -12.55288 -12.52919 -12.14593 -12.03791 -11.86216 -11.81885 -11.44217 -11.39004 -11.25762 -11.03245 -10.61525 -9.40555 -9.35635 -8.91890 -8.58626 -8.36716 -6.22432 -0.34080 0.16743 0.85032 0.99672 1.28025 1.36821 1.47796 1.51577 2.14416 2.22404 2.71181 2.90897 3.25166 3.63468 3.76528 3.98615 4.01972 4.10475 4.22389 4.30318 4.35501 4.40901 4.46955 4.47760 4.56491 4.58423 4.62806 4.73048 4.79461 4.81786 4.87714 5.02323 5.10002 5.18767 5.22139 5.28446 5.34241 5.42934 5.45567 5.47886 5.63308 5.68681 5.81532 5.82672 5.88029 6.04561 6.15808 6.21514 6.29855 6.49557 6.79382 6.92529 7.21785 8.37221 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.004848 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.077275 B = 5774.335685 C = 6677.882392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.005 3.995 4 C -0.179 4.179 5 C -0.185 4.185 6 C -0.059 4.059 7 C -0.038 4.038 8 C -0.096 4.096 9 C -0.105 4.105 10 C -0.114 4.114 11 C -0.112 4.112 12 C -0.074 4.074 13 C -0.109 4.109 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.060 4.060 18 C -0.130 4.130 19 C 0.059 3.941 20 C -0.483 4.483 21 H 0.069 0.931 22 C 0.036 3.964 23 N -0.829 5.829 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.268 1.268 27 H -0.260 1.260 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 11.883 0.578 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C -0.040 4.040 4 C -0.198 4.198 5 C -0.205 4.205 6 C -0.059 4.059 7 C -0.038 4.038 8 C -0.096 4.096 9 C -0.161 4.161 10 C -0.132 4.132 11 C -0.130 4.130 12 C -0.074 4.074 13 C -0.126 4.126 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.060 4.060 18 C -0.150 4.150 19 C 0.057 3.943 20 C -0.513 4.513 21 H 0.087 0.913 22 C -0.178 4.178 23 N -0.456 5.456 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.192 1.192 27 H -0.184 1.184 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.871 11.766 0.431 11.922 hybrid contribution 0.050 -1.086 -0.048 1.088 sum -1.822 10.680 0.383 10.841 Atomic orbital electron populations 1.23089 0.78635 1.04202 1.00954 1.85900 1.21497 1.27918 1.90103 1.19475 0.92222 0.83875 1.08418 1.20817 0.98863 0.91910 1.08186 1.20376 0.92800 0.95870 1.11439 1.18432 0.92981 0.91219 1.03313 1.19049 0.97900 0.92894 0.93942 1.20200 0.97459 0.96320 0.95595 1.20729 1.01638 0.98187 0.95567 1.20928 0.99554 0.92595 1.00100 1.21322 0.98551 1.00856 0.92227 1.18394 0.98751 0.93410 0.96852 1.21369 0.99092 0.99840 0.92325 1.21165 0.97180 0.96124 0.99432 1.21136 1.00382 0.94701 0.98184 1.21135 0.98827 0.99755 0.94131 1.18286 0.98824 0.94437 0.94493 1.20960 0.98415 0.89972 1.05665 1.17349 0.88763 0.94419 0.93756 1.19457 0.98616 0.96547 1.36654 0.91282 1.26636 0.99772 0.99367 0.92030 1.69901 1.19893 1.32547 1.23210 0.85344 0.76917 0.78312 0.79707 1.18713 1.19196 1.18388 0.87039 0.92852 0.93211 0.85483 0.87575 0.92349 0.89243 0.93288 0.83155 0.82115 0.82279 0.82762 0.84579 0.87765 0.87715 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.97 16 2 O -0.34 -16.00 9.77 -88.93 -0.87 -16.87 16 3 C 0.00 0.24 6.72 23.13 0.16 0.40 16 4 C -0.18 -8.02 9.01 22.28 0.20 -7.82 16 5 C -0.19 -8.33 8.42 22.65 0.19 -8.14 16 6 C -0.06 -2.81 3.27 -20.09 -0.07 -2.87 16 7 C -0.04 -1.60 5.33 -19.81 -0.11 -1.71 16 8 C -0.10 -3.52 5.90 -19.64 -0.12 -3.64 16 9 C -0.10 -3.66 9.00 71.24 0.64 -3.02 16 10 C -0.11 -3.30 9.57 21.99 0.21 -3.09 16 11 C -0.11 -2.99 9.75 22.36 0.22 -2.77 16 12 C -0.07 -2.33 5.74 -21.31 -0.12 -2.45 16 13 C -0.11 -2.68 9.77 22.35 0.22 -2.46 16 14 C -0.12 -2.94 9.95 22.04 0.22 -2.72 16 15 C -0.13 -3.76 9.95 22.06 0.22 -3.54 16 16 C -0.12 -4.58 9.14 22.28 0.20 -4.37 16 17 C -0.06 -2.35 5.75 -21.15 -0.12 -2.47 16 18 C -0.13 -6.99 7.39 22.94 0.17 -6.82 16 19 C 0.06 3.34 5.57 -21.23 -0.12 3.22 16 20 C -0.48 -27.40 8.70 23.40 0.20 -27.19 16 21 H 0.07 3.92 7.65 -2.91 -0.02 3.90 16 22 C 0.04 1.88 5.15 85.24 0.44 2.32 16 23 N -0.83 -45.27 10.97 21.82 0.24 -45.03 16 24 Si 0.98 40.29 29.59 68.60 2.03 42.32 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 27 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 28 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.05 1.59 7.66 -2.39 -0.02 1.58 16 30 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 31 H 0.13 4.79 6.27 -2.91 -0.02 4.77 16 32 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 35 H 0.05 1.94 6.87 -2.39 -0.02 1.92 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.10 4.44 6.39 -2.91 -0.02 4.42 16 42 H 0.10 5.99 6.20 -2.91 -0.02 5.97 16 43 H 0.28 14.26 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -68.31 355.24 6.17 -62.13 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 1.02 Total: 34.62 kcal Atomic # 6 Polarization: -80.93 SS G_CDS: 3.75 Total: -77.18 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.87 Total: -16.87 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -68.31 6.17 -62.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242981502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.745 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds