Wall clock time and date at job start Tue Mar 31 2020 12:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35861 * 116.99974 * 2 1 4 4 C 1.39404 * 119.46315 * 0.02562 * 3 2 1 5 5 C 1.37683 * 121.24626 * 180.02562 * 4 3 2 6 6 C 1.39551 * 120.10743 * 0.02562 * 5 4 3 7 7 C 1.47382 * 120.52242 * 179.97438 * 6 5 4 8 8 C 1.39090 * 120.70342 * 270.02864 * 7 6 5 9 9 C 1.50701 * 119.72085 * 359.97438 * 8 7 6 10 10 C 1.38716 * 120.56379 * 179.97438 * 8 7 6 11 11 C 1.36229 * 121.84511 * 359.97438 * 10 8 7 12 12 C 1.40504 * 120.67828 * 359.97438 * 11 10 8 13 13 C 1.40554 * 121.32162 * 180.02562 * 12 11 10 14 14 C 1.36198 * 119.62718 * 180.02562 * 13 12 11 15 15 C 1.39255 * 120.99586 * 359.68008 * 14 13 12 16 16 C 1.36385 * 120.90684 * 0.62840 * 15 14 13 17 17 C 1.39947 * 119.61708 * 359.40472 * 16 15 14 18 18 C 1.46501 * 118.95825 * 0.25561 * 6 5 4 19 19 C 1.40743 * 120.58871 * 179.70108 * 18 6 5 20 20 H 1.08000 * 120.00634 * 24.38352 * 19 18 6 21 21 C 1.40042 * 120.00133 * 204.39031 * 19 18 6 22 22 N 1.30792 * 119.99317 * 17.33700 * 21 19 18 23 23 Si 1.86792 * 120.00060 * 197.34419 * 21 19 18 24 24 H 1.48506 * 109.47092 * 89.99981 * 23 21 19 25 25 H 1.48503 * 109.46984 * 209.99119 * 23 21 19 26 26 H 1.48490 * 109.47564 * 329.99508 * 23 21 19 27 27 C 1.37776 * 119.46333 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47476 * 299.99611 * 1 2 3 29 29 H 1.08998 * 109.47406 * 59.99966 * 1 2 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.37095 * 0.04555 * 4 3 2 32 32 H 1.07998 * 119.94853 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47204 * 90.00032 * 9 8 7 34 34 H 1.09000 * 109.46987 * 210.00435 * 9 8 7 35 35 H 1.09005 * 109.47039 * 329.99786 * 9 8 7 36 36 H 1.07998 * 119.07728 * 179.97438 * 10 8 7 37 37 H 1.08000 * 119.65763 * 180.02562 * 11 10 8 38 38 H 1.08004 * 120.19185 * 0.05161 * 13 12 11 39 39 H 1.08004 * 119.50494 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.54584 * 180.33376 * 15 14 13 41 41 H 1.07993 * 120.18899 * 179.67088 * 16 15 14 42 42 H 0.97001 * 119.99458 * 180.02562 * 22 21 19 43 43 H 1.07995 * 120.10571 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2755 2.3725 0.0005 5 6 1.8621 3.6181 0.0000 6 6 3.2525 3.7371 -0.0016 7 6 3.8901 5.0659 -0.0027 8 6 4.1954 5.7061 -1.1992 9 6 3.8721 5.0351 -2.5093 10 6 4.7950 6.9570 -1.1968 11 6 5.1056 7.6030 -0.0384 12 6 4.8248 7.0164 1.2071 13 6 5.1389 7.6711 2.4105 14 6 4.8519 7.0702 3.5986 15 6 4.2448 5.8177 3.6406 16 6 3.9321 5.1519 2.4922 17 6 4.2134 5.7396 1.2536 18 6 4.0685 2.5204 -0.0084 19 6 5.4737 2.6005 -0.0166 20 1 5.9667 3.4810 0.3681 21 6 6.2326 1.5384 -0.5237 22 7 5.6690 0.6377 -1.2864 23 14 8.0496 1.4081 -0.1106 24 1 8.2191 0.6103 1.1305 25 1 8.7649 0.7420 -1.2286 26 1 8.6094 2.7680 0.0948 27 6 3.4222 1.2698 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.1984 2.2940 0.0017 32 1 1.2452 4.5046 0.0009 33 1 2.8675 5.3175 -2.8239 34 1 4.5915 5.3491 -3.2655 35 1 3.9236 3.9533 -2.3858 36 1 5.0219 7.4320 -2.1398 37 1 5.5717 8.5765 -0.0778 38 1 5.6049 8.6452 2.3933 39 1 5.0938 7.5753 4.5222 40 1 4.0228 5.3653 4.5958 41 1 3.4662 4.1787 2.5383 42 1 6.1947 -0.0982 -1.6374 43 1 4.0035 0.3596 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242982552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:00 Heat of formation + Delta-G solvation = 13.100042 kcal Electronic energy + Delta-G solvation = -26161.632096 eV Core-core repulsion = 22714.870694 eV Total energy + Delta-G solvation = -3446.761402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.69818 -38.61619 -36.67467 -35.73271 -33.68862 -32.36494 -30.90186 -29.75462 -29.56698 -28.17119 -26.71397 -25.68202 -25.12145 -22.81570 -21.74010 -21.31948 -20.90084 -19.47511 -17.73984 -16.69276 -16.34805 -16.14088 -15.42429 -15.18109 -14.83203 -14.74257 -14.45335 -13.81241 -13.38212 -13.31336 -13.10026 -13.07216 -12.71649 -12.40765 -12.35162 -12.23414 -11.75780 -11.67304 -11.38857 -11.27525 -11.20492 -11.13091 -10.97780 -10.62543 -10.46151 -10.42735 -10.29796 -9.83220 -9.78214 -9.62221 -9.21655 -9.01656 -7.96284 -7.55125 -7.08428 -6.97673 -6.72507 -4.48898 1.10025 1.58544 2.59897 2.65971 2.90045 3.03075 3.07555 3.18235 3.52457 3.85567 4.30968 4.51553 4.65217 5.12282 5.26098 5.34034 5.42423 5.51539 5.57104 5.65353 5.71823 5.72827 5.84654 5.89998 5.96022 5.99758 6.09456 6.21535 6.31050 6.34510 6.40722 6.53782 6.61833 6.71223 6.77358 6.84608 6.94923 6.95909 6.97011 7.10382 7.18490 7.35470 7.38719 7.45962 7.56695 7.66822 7.78723 7.96400 7.98931 8.31058 8.69312 8.73973 8.87157 10.02093 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.005916 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.644730 B = 4731.407441 C = 5838.545468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.331 6.331 3 C 0.142 3.858 4 C -0.329 4.329 5 C -0.035 4.035 6 C -0.214 4.214 7 C 0.053 3.947 8 C -0.097 4.097 9 C -0.105 4.105 10 C -0.097 4.097 11 C -0.140 4.140 12 C -0.050 4.050 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.074 4.074 17 C -0.049 4.049 18 C 0.162 3.838 19 C -0.435 4.435 20 H 0.083 0.917 21 C 0.078 3.922 22 N -0.772 5.772 23 Si 0.905 3.095 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.259 1.259 27 C -0.208 4.208 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.284 0.716 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 6.959 2.639 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.099 3.901 4 C -0.348 4.348 5 C -0.053 4.053 6 C -0.215 4.215 7 C 0.053 3.947 8 C -0.097 4.097 9 C -0.161 4.161 10 C -0.115 4.115 11 C -0.158 4.158 12 C -0.050 4.050 13 C -0.139 4.139 14 C -0.139 4.139 15 C -0.159 4.159 16 C -0.091 4.091 17 C -0.049 4.049 18 C 0.159 3.841 19 C -0.463 4.463 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.395 5.395 23 Si 0.729 3.271 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.183 1.183 27 C -0.228 4.228 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.149 6.555 2.475 7.329 hybrid contribution 0.580 0.074 0.103 0.594 sum -1.569 6.630 2.578 7.284 Atomic orbital electron populations 1.22745 0.80820 1.01777 1.00523 1.86004 1.19492 1.29345 1.89686 1.18930 0.92339 0.82384 0.96491 1.20155 0.97208 0.92421 1.25061 1.20198 0.92932 0.95057 0.97127 1.19270 0.91809 0.90106 1.20347 1.19704 0.93077 0.92110 0.89811 1.20019 1.00032 0.94297 0.95311 1.20685 0.99879 1.02565 0.93004 1.20517 0.98557 0.94765 0.97650 1.20701 1.03450 0.99970 0.91693 1.17963 0.99288 0.94156 0.93573 1.20889 1.01498 0.99545 0.91935 1.20697 0.99932 0.95820 0.97461 1.20783 1.01359 0.95608 0.98177 1.21059 0.97293 0.99478 0.91310 1.19253 0.98739 0.93322 0.93579 1.18178 0.92082 0.88221 0.85662 1.19490 0.91039 1.01883 1.33901 0.89900 1.25993 1.01394 0.94381 0.92560 1.69828 1.38699 1.10114 1.20863 0.86334 0.81625 0.79924 0.79230 1.18992 1.20087 1.18308 1.20454 0.89372 0.98892 1.14046 0.93714 0.93663 0.90006 0.88838 0.89228 0.92491 0.92935 0.89788 0.87003 0.86788 0.86495 0.86916 0.86681 0.85244 0.90460 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.79 101.05 0.99 1.59 16 2 O -0.33 -7.19 10.47 -19.30 -0.20 -7.39 16 3 C 0.14 3.37 6.66 -39.32 -0.26 3.10 16 4 C -0.33 -7.17 8.98 -39.35 -0.35 -7.52 16 5 C -0.03 -0.76 9.77 -39.29 -0.38 -1.14 16 6 C -0.21 -4.86 2.94 -102.36 -0.30 -5.16 16 7 C 0.05 1.12 4.42 -102.68 -0.45 0.67 16 8 C -0.10 -1.88 5.92 -104.13 -0.62 -2.50 16 9 C -0.10 -1.94 9.61 36.01 0.35 -1.59 16 10 C -0.10 -1.64 9.52 -40.13 -0.38 -2.02 16 11 C -0.14 -2.29 9.72 -39.45 -0.38 -2.67 16 12 C -0.05 -0.89 5.74 -106.87 -0.61 -1.50 16 13 C -0.12 -1.84 9.78 -39.44 -0.39 -2.23 16 14 C -0.12 -1.77 9.95 -39.94 -0.40 -2.17 16 15 C -0.14 -2.26 9.96 -39.87 -0.40 -2.66 16 16 C -0.07 -1.39 9.46 -39.61 -0.37 -1.77 16 17 C -0.05 -0.98 5.90 -104.77 -0.62 -1.59 16 18 C 0.16 4.06 5.50 -104.66 -0.58 3.49 16 19 C -0.44 -10.99 8.58 -37.96 -0.33 -11.32 16 20 H 0.08 2.12 7.37 -52.49 -0.39 1.74 16 21 C 0.08 1.87 5.16 -17.32 -0.09 1.79 16 22 N -0.77 -19.18 10.95 55.55 0.61 -18.57 16 23 Si 0.90 18.43 29.59 -169.99 -5.03 13.40 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.21 -5.32 8.61 -38.79 -0.33 -5.66 16 28 H 0.04 0.67 7.62 -51.93 -0.40 0.27 16 29 H 0.04 0.69 7.63 -51.93 -0.40 0.29 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.81 6.17 -52.49 -0.32 1.49 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.08 1.83 6.88 -51.93 -0.36 1.47 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.58 7.30 -52.49 -0.38 2.19 16 42 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 43 H 0.13 3.42 6.18 -52.49 -0.32 3.10 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -27.40 358.45 -10.64 -38.04 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.50 Total: 10.00 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -5.91 Total: -40.87 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.61 Total: -18.57 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.20 Total: -7.39 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.40 -10.64 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds