Wall clock time and date at job start Tue Mar 31 2020 12:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35861 * 116.99974 * 2 1 4 4 C 1.39404 * 119.46315 * 0.02562 * 3 2 1 5 5 C 1.37683 * 121.24626 * 180.02562 * 4 3 2 6 6 C 1.39551 * 120.10743 * 0.02562 * 5 4 3 7 7 C 1.47382 * 120.52242 * 179.97438 * 6 5 4 8 8 C 1.39090 * 120.70342 * 270.02864 * 7 6 5 9 9 C 1.50701 * 119.72085 * 359.97438 * 8 7 6 10 10 C 1.38716 * 120.56379 * 179.97438 * 8 7 6 11 11 C 1.36229 * 121.84511 * 359.97438 * 10 8 7 12 12 C 1.40504 * 120.67828 * 359.97438 * 11 10 8 13 13 C 1.40554 * 121.32162 * 180.02562 * 12 11 10 14 14 C 1.36198 * 119.62718 * 180.02562 * 13 12 11 15 15 C 1.39255 * 120.99586 * 359.68008 * 14 13 12 16 16 C 1.36385 * 120.90684 * 0.62840 * 15 14 13 17 17 C 1.39947 * 119.61708 * 359.40472 * 16 15 14 18 18 C 1.46501 * 118.95825 * 0.25561 * 6 5 4 19 19 C 1.40743 * 120.58871 * 179.70108 * 18 6 5 20 20 H 1.08000 * 120.00634 * 24.38352 * 19 18 6 21 21 C 1.40042 * 120.00133 * 204.39031 * 19 18 6 22 22 N 1.30792 * 119.99317 * 17.33700 * 21 19 18 23 23 Si 1.86792 * 120.00060 * 197.34419 * 21 19 18 24 24 H 1.48506 * 109.47092 * 89.99981 * 23 21 19 25 25 H 1.48503 * 109.46984 * 209.99119 * 23 21 19 26 26 H 1.48490 * 109.47564 * 329.99508 * 23 21 19 27 27 C 1.37776 * 119.46333 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47476 * 299.99611 * 1 2 3 29 29 H 1.08998 * 109.47406 * 59.99966 * 1 2 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.37095 * 0.04555 * 4 3 2 32 32 H 1.07998 * 119.94853 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47204 * 90.00032 * 9 8 7 34 34 H 1.09000 * 109.46987 * 210.00435 * 9 8 7 35 35 H 1.09005 * 109.47039 * 329.99786 * 9 8 7 36 36 H 1.07998 * 119.07728 * 179.97438 * 10 8 7 37 37 H 1.08000 * 119.65763 * 180.02562 * 11 10 8 38 38 H 1.08004 * 120.19185 * 0.05161 * 13 12 11 39 39 H 1.08004 * 119.50494 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.54584 * 180.33376 * 15 14 13 41 41 H 1.07993 * 120.18899 * 179.67088 * 16 15 14 42 42 H 0.97001 * 119.99458 * 180.02562 * 22 21 19 43 43 H 1.07995 * 120.10571 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2755 2.3725 0.0005 5 6 1.8621 3.6181 0.0000 6 6 3.2525 3.7371 -0.0016 7 6 3.8901 5.0659 -0.0027 8 6 4.1954 5.7061 -1.1992 9 6 3.8721 5.0351 -2.5093 10 6 4.7950 6.9570 -1.1968 11 6 5.1056 7.6030 -0.0384 12 6 4.8248 7.0164 1.2071 13 6 5.1389 7.6711 2.4105 14 6 4.8519 7.0702 3.5986 15 6 4.2448 5.8177 3.6406 16 6 3.9321 5.1519 2.4922 17 6 4.2134 5.7396 1.2536 18 6 4.0685 2.5204 -0.0084 19 6 5.4737 2.6005 -0.0166 20 1 5.9667 3.4810 0.3681 21 6 6.2326 1.5384 -0.5237 22 7 5.6690 0.6377 -1.2864 23 14 8.0496 1.4081 -0.1106 24 1 8.2191 0.6103 1.1305 25 1 8.7649 0.7420 -1.2286 26 1 8.6094 2.7680 0.0948 27 6 3.4222 1.2698 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.1984 2.2940 0.0017 32 1 1.2452 4.5046 0.0009 33 1 2.8675 5.3175 -2.8239 34 1 4.5915 5.3491 -3.2655 35 1 3.9236 3.9533 -2.3858 36 1 5.0219 7.4320 -2.1398 37 1 5.5717 8.5765 -0.0778 38 1 5.6049 8.6452 2.3933 39 1 5.0938 7.5753 4.5222 40 1 4.0228 5.3653 4.5958 41 1 3.4662 4.1787 2.5383 42 1 6.1947 -0.0982 -1.6374 43 1 4.0035 0.3596 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242982552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:59 Heat of formation + Delta-G solvation = 2.209406 kcal Electronic energy + Delta-G solvation = -26162.104349 eV Core-core repulsion = 22714.870694 eV Total energy + Delta-G solvation = -3447.233655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07144 -40.27779 -38.21467 -37.21937 -35.48117 -33.78961 -32.25502 -31.58146 -31.02035 -29.65611 -28.18353 -27.18156 -26.85261 -24.16943 -23.25752 -22.70784 -22.61881 -21.02985 -19.51412 -18.06726 -17.95031 -17.62416 -16.89083 -16.77320 -16.41723 -16.34634 -15.93098 -15.08112 -14.95670 -14.79866 -14.62915 -14.39311 -14.36960 -14.01642 -13.73685 -13.58349 -13.46414 -13.03848 -12.95929 -12.88710 -12.80565 -12.69304 -12.46162 -12.20961 -11.92485 -11.80195 -11.74911 -11.42253 -11.41193 -11.27986 -11.01042 -10.40481 -9.41461 -9.28262 -8.81490 -8.51636 -8.41149 -6.37895 -0.22354 0.26544 0.89140 1.09275 1.25156 1.33007 1.45408 1.49235 2.15059 2.21758 2.66511 2.78343 3.30837 3.60562 3.88685 3.99886 4.11629 4.19546 4.27255 4.36149 4.37490 4.45188 4.48618 4.53416 4.58176 4.66328 4.69215 4.73647 4.84951 4.87579 5.00134 5.04502 5.09739 5.18363 5.29351 5.31549 5.37486 5.45604 5.54158 5.55267 5.68395 5.76193 5.88243 5.90255 6.00998 6.09674 6.12043 6.20010 6.30783 6.46657 6.86798 6.89780 7.06148 8.23892 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009542 B = 0.005916 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.644730 B = 4731.407441 C = 5838.545468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.136 3.864 4 C -0.324 4.324 5 C -0.047 4.047 6 C -0.197 4.197 7 C 0.008 3.992 8 C -0.105 4.105 9 C -0.098 4.098 10 C -0.111 4.111 11 C -0.124 4.124 12 C -0.072 4.072 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.129 4.129 16 C -0.112 4.112 17 C -0.067 4.067 18 C 0.139 3.861 19 C -0.458 4.458 20 H 0.069 0.931 21 C 0.040 3.960 22 N -0.805 5.805 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.263 1.263 26 H -0.261 1.261 27 C -0.241 4.241 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.290 0.710 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 9.993 3.524 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.092 3.908 4 C -0.344 4.344 5 C -0.065 4.065 6 C -0.199 4.199 7 C 0.008 3.992 8 C -0.105 4.105 9 C -0.155 4.155 10 C -0.129 4.129 11 C -0.142 4.142 12 C -0.072 4.072 13 C -0.129 4.129 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.130 4.130 17 C -0.067 4.067 18 C 0.136 3.864 19 C -0.487 4.487 20 H 0.087 0.913 21 C -0.177 4.177 22 N -0.429 5.429 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.187 1.187 26 H -0.185 1.185 27 C -0.261 4.261 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.682 9.583 3.357 10.292 hybrid contribution 0.279 -0.778 -0.096 0.832 sum -1.403 8.804 3.261 9.493 Atomic orbital electron populations 1.23119 0.77727 1.04428 1.01406 1.85964 1.22718 1.28588 1.89493 1.18995 0.92036 0.83708 0.96081 1.20434 0.98501 0.91756 1.23672 1.20502 0.93070 0.95824 0.97102 1.19485 0.92119 0.90623 1.17629 1.19756 0.95994 0.92050 0.91434 1.20249 0.99989 0.95533 0.94697 1.20608 1.01391 0.99723 0.93767 1.20785 0.98637 0.93888 0.99576 1.21172 1.01359 1.00986 0.90674 1.18350 0.99668 0.93624 0.95608 1.21348 1.00031 1.00656 0.90892 1.21133 0.98716 0.94971 0.99152 1.21127 0.99564 0.96067 0.97952 1.20961 1.00107 0.99309 0.92649 1.19410 0.99571 0.94631 0.93135 1.18465 0.92704 0.89077 0.86106 1.19476 0.91493 1.02227 1.35470 0.91282 1.26727 1.05334 0.93709 0.91949 1.69887 1.40352 1.10840 1.21816 0.85380 0.76590 0.79678 0.79317 1.18612 1.18673 1.18480 1.20391 0.90544 0.98339 1.16851 0.92565 0.92861 0.86638 0.86083 0.87418 0.91189 0.90746 0.94049 0.83930 0.82762 0.82622 0.82895 0.84526 0.88087 0.89900 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.79 113.37 1.11 1.97 16 2 O -0.35 -15.78 10.47 -91.98 -0.96 -16.74 16 3 C 0.14 6.75 6.66 22.44 0.15 6.90 16 4 C -0.32 -14.48 8.98 22.42 0.20 -14.28 16 5 C -0.05 -2.11 9.77 22.46 0.22 -1.89 16 6 C -0.20 -9.51 2.94 -18.40 -0.05 -9.56 16 7 C 0.01 0.34 4.42 -18.60 -0.08 0.25 16 8 C -0.10 -4.12 5.92 -19.55 -0.12 -4.23 16 9 C -0.10 -3.72 9.61 71.24 0.68 -3.04 16 10 C -0.11 -3.54 9.52 21.92 0.21 -3.33 16 11 C -0.12 -3.66 9.72 22.35 0.22 -3.44 16 12 C -0.07 -2.43 5.74 -21.32 -0.12 -2.56 16 13 C -0.11 -2.96 9.78 22.36 0.22 -2.74 16 14 C -0.12 -3.11 9.95 22.04 0.22 -2.90 16 15 C -0.13 -3.96 9.96 22.08 0.22 -3.74 16 16 C -0.11 -4.38 9.46 22.25 0.21 -4.17 16 17 C -0.07 -2.73 5.90 -19.96 -0.12 -2.85 16 18 C 0.14 7.54 5.50 -19.89 -0.11 7.43 16 19 C -0.46 -24.81 8.58 23.32 0.20 -24.61 16 20 H 0.07 3.80 7.37 -2.91 -0.02 3.78 16 21 C 0.04 2.06 5.16 85.29 0.44 2.50 16 22 N -0.80 -42.56 10.95 21.84 0.24 -42.32 16 23 Si 0.97 39.22 29.59 68.60 2.03 41.25 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 C -0.24 -13.32 8.61 22.78 0.20 -13.12 16 28 H 0.06 1.61 7.62 -2.39 -0.02 1.60 16 29 H 0.05 1.57 7.63 -2.39 -0.02 1.55 16 30 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.12 4.62 6.17 -2.91 -0.02 4.60 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 35 H 0.04 1.91 6.88 -2.38 -0.02 1.89 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.10 4.38 7.30 -2.91 -0.02 4.35 16 42 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 43 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 Total: -1.00 -65.58 358.45 6.22 -59.36 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 1.02 Total: 35.86 kcal Atomic # 6 Polarization: -81.30 SS G_CDS: 3.89 Total: -77.40 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.24 Total: -42.32 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.96 Total: -16.74 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -65.58 6.22 -59.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.573 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds