Wall clock time and date at job start Tue Mar 31 2020 13:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35833 * 116.99580 * 2 1 4 4 C 1.38561 * 120.12704 * 359.73007 * 3 2 1 5 5 C 1.38191 * 120.07016 * 179.71825 * 4 3 2 6 6 C 1.50705 * 119.83648 * 180.27441 * 5 4 3 7 7 C 1.38419 * 120.32999 * 0.55551 * 5 4 3 8 8 C 1.37963 * 120.25001 * 359.72044 * 7 5 4 9 9 C 1.39429 * 119.92256 * 0.02562 * 8 7 5 10 10 C 1.48094 * 120.16167 * 179.97438 * 9 8 7 11 11 C 1.36713 * 120.34534 * 64.74215 * 10 9 8 12 12 C 1.41101 * 120.58454 * 179.87992 * 11 10 9 13 13 C 1.41222 * 119.48566 * 180.19435 * 12 11 10 14 14 H 1.07996 * 120.00368 * 25.79098 * 13 12 11 15 15 C 1.39926 * 119.99679 * 205.79287 * 13 12 11 16 16 N 1.30833 * 120.00039 * 18.21939 * 15 13 12 17 17 Si 1.86801 * 119.99736 * 198.21633 * 15 13 12 18 18 H 1.48504 * 109.47127 * 60.00150 * 17 15 13 19 19 H 1.48491 * 109.47090 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47050 * 300.00414 * 17 15 13 21 21 C 1.39976 * 121.02755 * 0.33325 * 12 11 10 22 22 C 1.39893 * 120.11462 * 359.88470 * 21 12 11 23 23 C 1.40851 * 121.13450 * 179.89356 * 22 21 12 24 24 C 1.36198 * 119.60556 * 180.02562 * 23 22 21 25 25 C 1.39238 * 120.93856 * 0.05054 * 24 23 22 26 26 C 1.36552 * 120.98052 * 359.96633 * 25 24 23 27 27 C 1.39793 * 119.73772 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47032 * 60.00092 * 1 2 3 30 30 H 1.08994 * 109.47022 * 299.99699 * 1 2 3 31 31 H 1.08003 * 119.96538 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.47167 * 270.27977 * 6 5 4 33 33 H 1.08998 * 109.46690 * 30.27930 * 6 5 4 34 34 H 1.09000 * 109.47003 * 150.27489 * 6 5 4 35 35 H 1.08003 * 119.87436 * 179.70193 * 7 5 4 36 36 H 1.07994 * 120.04102 * 179.97438 * 8 7 5 37 37 H 1.07997 * 119.70627 * 359.97438 * 11 10 9 38 38 H 0.96999 * 119.99831 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.94088 * 179.85896 * 21 12 11 40 40 H 1.08003 * 120.20308 * 0.08523 * 23 22 21 41 41 H 1.08001 * 119.53327 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.50805 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.12799 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2934 2.3740 -0.0056 5 6 1.9219 3.6047 0.0002 6 6 1.0986 4.8670 0.0003 7 6 3.3038 3.6839 0.0002 8 6 4.0659 2.5338 0.0001 9 6 3.4427 1.2866 -0.0005 10 6 4.2555 0.0486 -0.0012 11 6 5.0555 -0.2529 1.0656 12 6 5.8302 -1.4323 1.0714 13 6 6.6453 -1.7231 2.1874 14 1 6.3924 -1.3254 3.1591 15 6 7.7807 -2.5264 2.0340 16 7 8.2931 -2.7146 0.8450 17 14 8.5648 -3.3299 3.5269 18 1 7.5779 -4.2251 4.1828 19 1 9.7454 -4.1227 3.0995 20 1 8.9946 -2.2803 4.4855 21 6 5.8055 -2.3170 -0.0130 22 6 5.0031 -2.0417 -1.1254 23 6 4.9636 -2.9158 -2.2291 24 6 4.1717 -2.6169 -3.2961 25 6 3.4003 -1.4579 -3.3127 26 6 3.4152 -0.5886 -2.2597 27 6 4.2154 -0.8614 -1.1465 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3191 -0.0105 32 1 0.9001 5.1714 -1.0273 33 1 0.1548 4.6851 0.5142 34 1 1.6456 5.6575 0.5142 35 1 3.7873 4.6496 0.0000 36 1 5.1438 2.5995 -0.0003 37 1 5.0937 0.4167 1.9121 38 1 9.0804 -3.2711 0.7388 39 1 6.4072 -3.2136 0.0090 40 1 5.5569 -3.8183 -2.2290 41 1 4.1419 -3.2882 -4.1416 42 1 2.7809 -1.2433 -4.1710 43 1 2.8110 0.3062 -2.2870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242982873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:07 Heat of formation + Delta-G solvation = 13.374159 kcal Electronic energy + Delta-G solvation = -25788.689610 eV Core-core repulsion = 22341.940095 eV Total energy + Delta-G solvation = -3446.749515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.07194 -38.53635 -37.30768 -35.63759 -33.95858 -32.43536 -30.71625 -29.89124 -29.45557 -28.40791 -27.51352 -25.85866 -25.09284 -22.27504 -21.90296 -21.46741 -21.07013 -19.86515 -17.76572 -17.09190 -16.18969 -15.99406 -15.74558 -15.45645 -15.13385 -14.82639 -14.23630 -14.06721 -13.64739 -13.63600 -13.28699 -13.16384 -12.59012 -12.44224 -12.40960 -12.16413 -12.09948 -11.83256 -11.74686 -11.49269 -11.26272 -11.19256 -10.88491 -10.79713 -10.72147 -10.63974 -10.40470 -9.89750 -9.60560 -9.48607 -9.10427 -8.62309 -8.42461 -7.78376 -7.40840 -6.82515 -6.59531 -4.33761 1.43364 1.69335 1.89508 2.38809 3.00157 3.04431 3.08139 3.34101 3.56323 3.87954 3.98144 4.10537 4.84229 4.86525 5.01828 5.13382 5.20001 5.25806 5.38581 5.49665 5.54974 5.59153 5.68989 5.76510 5.79089 5.82446 5.85460 5.93945 6.00205 6.25728 6.30435 6.48073 6.49971 6.64663 6.70565 6.75704 6.83894 6.98750 7.02582 7.06553 7.14504 7.35424 7.47953 7.53092 7.60390 7.72048 7.81004 7.96490 8.14680 8.23193 8.57671 8.79301 8.86688 10.11968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004459 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.325377 B = 6278.204921 C = 7563.774293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.140 3.860 4 C -0.214 4.214 5 C -0.062 4.062 6 C -0.111 4.111 7 C -0.159 4.159 8 C -0.069 4.069 9 C -0.054 4.054 10 C -0.040 4.040 11 C -0.128 4.128 12 C 0.102 3.898 13 C -0.452 4.452 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.780 5.780 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.206 4.206 22 C 0.001 3.999 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.195 4.195 26 C -0.065 4.065 27 C -0.108 4.108 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.283 0.717 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 7.994 -1.828 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.207 6.207 3 C 0.095 3.905 4 C -0.233 4.233 5 C -0.062 4.062 6 C -0.167 4.167 7 C -0.177 4.177 8 C -0.087 4.087 9 C -0.055 4.055 10 C -0.040 4.040 11 C -0.147 4.147 12 C 0.100 3.900 13 C -0.480 4.480 14 H 0.097 0.903 15 C -0.144 4.144 16 N -0.404 5.404 17 Si 0.731 3.269 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.226 4.226 22 C 0.001 3.999 23 C -0.158 4.158 24 C -0.137 4.137 25 C -0.213 4.213 26 C -0.083 4.083 27 C -0.108 4.108 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.494 7.690 -1.935 13.153 hybrid contribution 0.201 -0.253 0.578 0.662 sum -10.293 7.437 -1.357 12.771 Atomic orbital electron populations 1.23009 0.79516 1.03660 1.00619 1.86283 1.20167 1.26239 1.88013 1.19082 0.91570 0.84153 0.95743 1.20945 0.99431 0.91791 1.11143 1.19618 0.93914 0.94210 0.98487 1.20760 0.99118 0.94821 1.02040 1.20800 0.92973 0.98186 1.05745 1.21151 1.00079 0.90487 0.96999 1.18274 0.89462 0.93838 1.03884 1.18957 0.97457 0.92561 0.95004 1.21117 0.98976 0.97648 0.96916 1.17360 0.90108 0.89153 0.93396 1.19593 1.06491 1.26142 0.95789 0.90325 1.25895 0.96618 0.94844 0.97066 1.69836 1.17948 1.28701 1.23900 0.86379 0.78728 0.79938 0.81820 1.18728 1.20248 1.18972 1.21151 1.04854 1.01697 0.94904 1.17917 0.94977 0.92672 0.94345 1.20877 1.00932 0.99755 0.94255 1.20449 0.98229 0.97177 0.97843 1.20294 1.04510 0.97319 0.99203 1.20541 0.96929 0.97697 0.93157 1.18427 1.01760 0.96253 0.94393 0.88501 0.93122 0.93141 0.85890 0.91370 0.91927 0.91583 0.86221 0.85191 0.88164 0.90636 0.86178 0.87460 0.88323 0.88535 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.29 -5.18 9.15 -19.22 -0.18 -5.36 16 3 C 0.14 2.43 5.57 -38.83 -0.22 2.21 16 4 C -0.21 -3.05 8.68 -39.48 -0.34 -3.39 16 5 C -0.06 -0.82 5.88 -104.57 -0.62 -1.44 16 6 C -0.11 -1.05 10.00 36.01 0.36 -0.69 16 7 C -0.16 -2.23 9.68 -39.62 -0.38 -2.61 16 8 C -0.07 -1.16 9.73 -39.24 -0.38 -1.54 16 9 C -0.05 -1.03 4.56 -104.78 -0.48 -1.51 16 10 C -0.04 -0.89 5.04 -103.15 -0.52 -1.41 16 11 C -0.13 -3.06 9.31 -39.05 -0.36 -3.42 16 12 C 0.10 2.68 5.55 -107.03 -0.59 2.08 16 13 C -0.45 -11.63 8.99 -37.82 -0.34 -11.97 16 14 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 15 C 0.07 1.84 5.09 -17.35 -0.09 1.75 16 16 N -0.78 -19.85 11.00 55.55 0.61 -19.24 16 17 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.21 -5.42 8.39 -38.31 -0.32 -5.74 16 22 C 0.00 0.03 5.74 -106.88 -0.61 -0.58 16 23 C -0.14 -3.09 9.78 -39.33 -0.38 -3.48 16 24 C -0.12 -2.36 9.95 -39.94 -0.40 -2.75 16 25 C -0.19 -3.83 9.96 -39.82 -0.40 -4.23 16 26 C -0.07 -1.37 8.68 -39.61 -0.34 -1.72 16 27 C -0.11 -2.53 5.73 -104.65 -0.60 -3.12 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 31 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.12 3.27 6.15 -52.49 -0.32 2.94 16 40 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.10 1.94 6.49 -52.49 -0.34 1.60 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -28.86 358.45 -10.78 -39.65 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.56 Total: 8.55 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: -6.03 Total: -42.24 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.18 Total: -5.36 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.86 -10.78 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.019 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds