Wall clock time and date at job start Tue Mar 31 2020 13:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35833 * 116.99580 * 2 1 4 4 C 1.38561 * 120.12704 * 359.73007 * 3 2 1 5 5 C 1.38191 * 120.07016 * 179.71825 * 4 3 2 6 6 C 1.50705 * 119.83648 * 180.27441 * 5 4 3 7 7 C 1.38419 * 120.32999 * 0.55551 * 5 4 3 8 8 C 1.37963 * 120.25001 * 359.72044 * 7 5 4 9 9 C 1.39429 * 119.92256 * 0.02562 * 8 7 5 10 10 C 1.48094 * 120.16167 * 179.97438 * 9 8 7 11 11 C 1.36713 * 120.34534 * 64.74215 * 10 9 8 12 12 C 1.41101 * 120.58454 * 179.87992 * 11 10 9 13 13 C 1.41222 * 119.48566 * 180.19435 * 12 11 10 14 14 H 1.07996 * 120.00368 * 25.79098 * 13 12 11 15 15 C 1.39926 * 119.99679 * 205.79287 * 13 12 11 16 16 N 1.30833 * 120.00039 * 18.21939 * 15 13 12 17 17 Si 1.86801 * 119.99736 * 198.21633 * 15 13 12 18 18 H 1.48504 * 109.47127 * 60.00150 * 17 15 13 19 19 H 1.48491 * 109.47090 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47050 * 300.00414 * 17 15 13 21 21 C 1.39976 * 121.02755 * 0.33325 * 12 11 10 22 22 C 1.39893 * 120.11462 * 359.88470 * 21 12 11 23 23 C 1.40851 * 121.13450 * 179.89356 * 22 21 12 24 24 C 1.36198 * 119.60556 * 180.02562 * 23 22 21 25 25 C 1.39238 * 120.93856 * 0.05054 * 24 23 22 26 26 C 1.36552 * 120.98052 * 359.96633 * 25 24 23 27 27 C 1.39793 * 119.73772 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47032 * 60.00092 * 1 2 3 30 30 H 1.08994 * 109.47022 * 299.99699 * 1 2 3 31 31 H 1.08003 * 119.96538 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.47167 * 270.27977 * 6 5 4 33 33 H 1.08998 * 109.46690 * 30.27930 * 6 5 4 34 34 H 1.09000 * 109.47003 * 150.27489 * 6 5 4 35 35 H 1.08003 * 119.87436 * 179.70193 * 7 5 4 36 36 H 1.07994 * 120.04102 * 179.97438 * 8 7 5 37 37 H 1.07997 * 119.70627 * 359.97438 * 11 10 9 38 38 H 0.96999 * 119.99831 * 179.97438 * 16 15 13 39 39 H 1.07998 * 119.94088 * 179.85896 * 21 12 11 40 40 H 1.08003 * 120.20308 * 0.08523 * 23 22 21 41 41 H 1.08001 * 119.53327 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.50805 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.12799 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2934 2.3740 -0.0056 5 6 1.9219 3.6047 0.0002 6 6 1.0986 4.8670 0.0003 7 6 3.3038 3.6839 0.0002 8 6 4.0659 2.5338 0.0001 9 6 3.4427 1.2866 -0.0005 10 6 4.2555 0.0486 -0.0012 11 6 5.0555 -0.2529 1.0656 12 6 5.8302 -1.4323 1.0714 13 6 6.6453 -1.7231 2.1874 14 1 6.3924 -1.3254 3.1591 15 6 7.7807 -2.5264 2.0340 16 7 8.2931 -2.7146 0.8450 17 14 8.5648 -3.3299 3.5269 18 1 7.5779 -4.2251 4.1828 19 1 9.7454 -4.1227 3.0995 20 1 8.9946 -2.2803 4.4855 21 6 5.8055 -2.3170 -0.0130 22 6 5.0031 -2.0417 -1.1254 23 6 4.9636 -2.9158 -2.2291 24 6 4.1717 -2.6169 -3.2961 25 6 3.4003 -1.4579 -3.3127 26 6 3.4152 -0.5886 -2.2597 27 6 4.2154 -0.8614 -1.1465 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3191 -0.0105 32 1 0.9001 5.1714 -1.0273 33 1 0.1548 4.6851 0.5142 34 1 1.6456 5.6575 0.5142 35 1 3.7873 4.6496 0.0000 36 1 5.1438 2.5995 -0.0003 37 1 5.0937 0.4167 1.9121 38 1 9.0804 -3.2711 0.7388 39 1 6.4072 -3.2136 0.0090 40 1 5.5569 -3.8183 -2.2290 41 1 4.1419 -3.2882 -4.1416 42 1 2.7809 -1.2433 -4.1710 43 1 2.8110 0.3062 -2.2870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242982873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:06 Heat of formation + Delta-G solvation = 1.207542 kcal Electronic energy + Delta-G solvation = -25789.217194 eV Core-core repulsion = 22341.940095 eV Total energy + Delta-G solvation = -3447.277100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.35412 -40.18205 -38.47369 -37.39553 -35.55692 -33.99488 -32.20455 -31.32046 -30.98051 -29.94948 -28.55220 -27.29040 -26.70728 -23.85920 -23.22724 -22.96490 -22.62816 -21.42943 -19.43966 -18.33885 -17.79164 -17.72010 -16.97572 -16.74150 -16.64283 -16.34312 -15.89255 -15.19033 -14.94375 -14.81587 -14.68764 -14.41955 -14.19011 -14.05536 -13.95432 -13.71907 -13.25749 -13.09629 -12.98071 -12.86183 -12.79158 -12.59186 -12.49591 -12.30075 -12.07959 -11.91722 -11.77539 -11.63615 -11.34944 -11.20809 -10.90383 -10.32782 -9.66856 -9.22639 -9.04076 -8.66757 -8.35048 -6.29645 -0.03063 0.39160 0.52678 0.62324 1.34810 1.39890 1.48580 1.58909 2.17525 2.31710 2.47334 2.78538 3.05121 3.74918 3.77155 3.94669 4.03977 4.13089 4.23607 4.30740 4.34709 4.39219 4.40986 4.45649 4.64366 4.70546 4.73025 4.77048 4.80018 4.89626 4.90644 4.96703 4.97917 5.17189 5.18557 5.28688 5.30779 5.38364 5.51955 5.60804 5.65891 5.72907 5.76772 5.87967 5.93072 6.02844 6.09094 6.26695 6.46402 6.58194 6.67526 6.88419 6.97250 8.30354 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004459 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.325377 B = 6278.204921 C = 7563.774293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.051 4.051 6 C -0.109 4.109 7 C -0.158 4.158 8 C -0.080 4.080 9 C -0.097 4.097 10 C -0.022 4.022 11 C -0.160 4.160 12 C 0.080 3.920 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.035 3.965 16 N -0.815 5.815 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.256 1.256 21 C -0.238 4.238 22 C -0.022 4.022 23 C -0.164 4.164 24 C -0.105 4.105 25 C -0.185 4.185 26 C -0.068 4.068 27 C -0.129 4.129 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 9.920 -3.052 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.087 3.913 4 C -0.230 4.230 5 C -0.051 4.051 6 C -0.166 4.166 7 C -0.176 4.176 8 C -0.098 4.098 9 C -0.098 4.098 10 C -0.022 4.022 11 C -0.179 4.179 12 C 0.078 3.922 13 C -0.518 4.518 14 H 0.096 0.904 15 C -0.181 4.181 16 N -0.440 5.440 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.258 4.258 22 C -0.023 4.023 23 C -0.182 4.182 24 C -0.123 4.123 25 C -0.203 4.203 26 C -0.086 4.086 27 C -0.130 4.130 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.166 0.834 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.205 9.628 -3.172 16.647 hybrid contribution 0.811 -0.727 0.759 1.327 sum -12.394 8.902 -2.412 15.449 Atomic orbital electron populations 1.23313 0.76928 1.04984 1.02367 1.86226 1.23041 1.26995 1.88181 1.19158 0.90954 0.85202 0.95984 1.21280 1.00795 0.90928 1.09966 1.20144 0.93900 0.95586 0.95462 1.20858 0.99259 0.92939 1.03509 1.21110 0.93595 0.98181 1.04706 1.21190 1.00052 0.90928 0.97629 1.18254 0.90482 0.92942 1.08117 1.19319 0.95893 0.93377 0.93591 1.21168 1.00857 0.97680 0.98169 1.17694 0.90809 0.89962 0.93769 1.19844 1.07816 1.28328 0.95826 0.90380 1.26766 0.96591 0.94611 1.00110 1.69915 1.18592 1.29459 1.26049 0.85265 0.77820 0.78909 0.77821 1.18600 1.19075 1.18045 1.21037 1.06562 1.01721 0.96490 1.18233 0.95229 0.94025 0.94764 1.21047 1.02499 0.99978 0.94714 1.20887 0.96124 0.97503 0.97759 1.20797 1.03655 0.96193 0.99625 1.20710 0.96532 0.98603 0.92722 1.18803 1.02259 0.96174 0.95779 0.87610 0.91109 0.91461 0.82872 0.89724 0.90327 0.90173 0.83414 0.86178 0.88033 0.90080 0.88306 0.87164 0.84319 0.84471 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -11.45 9.15 -91.68 -0.84 -12.29 16 3 C 0.13 4.48 5.57 22.75 0.13 4.61 16 4 C -0.21 -5.37 8.68 22.34 0.19 -5.18 16 5 C -0.05 -1.16 5.88 -19.83 -0.12 -1.28 16 6 C -0.11 -1.52 10.00 71.24 0.71 -0.81 16 7 C -0.16 -4.09 9.68 22.25 0.22 -3.87 16 8 C -0.08 -2.70 9.73 22.49 0.22 -2.49 16 9 C -0.10 -3.80 4.56 -19.97 -0.09 -3.89 16 10 C -0.02 -1.03 5.04 -18.91 -0.10 -1.13 16 11 C -0.16 -8.33 9.31 22.62 0.21 -8.12 16 12 C 0.08 4.56 5.55 -21.42 -0.12 4.44 16 13 C -0.49 -27.25 8.99 23.41 0.21 -27.04 16 14 H 0.08 4.15 7.91 -2.91 -0.02 4.12 16 15 C 0.04 1.82 5.09 85.25 0.43 2.25 16 16 N -0.82 -44.28 11.00 21.82 0.24 -44.04 16 17 Si 0.98 39.13 29.60 68.60 2.03 41.16 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 C -0.24 -13.60 8.39 23.09 0.19 -13.41 16 22 C -0.02 -1.16 5.74 -21.33 -0.12 -1.29 16 23 C -0.16 -7.42 9.78 22.43 0.22 -7.20 16 24 C -0.10 -3.95 9.95 22.03 0.22 -3.73 16 25 C -0.18 -6.75 9.96 22.12 0.22 -6.53 16 26 C -0.07 -2.80 8.68 22.25 0.19 -2.61 16 27 C -0.13 -6.30 5.73 -19.88 -0.11 -6.41 16 28 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 30 H 0.07 1.22 7.67 -2.39 -0.02 1.20 16 31 H 0.15 2.89 6.30 -2.91 -0.02 2.87 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 34 H 0.08 0.94 8.08 -2.39 -0.02 0.93 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.10 5.90 6.15 -2.91 -0.02 5.89 16 40 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 43 H 0.11 4.27 6.49 -2.91 -0.02 4.25 16 Total: -1.00 -69.04 358.45 6.27 -62.77 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 1.02 Total: 34.56 kcal Atomic # 6 Polarization: -85.98 SS G_CDS: 3.82 Total: -82.16 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.24 Total: -44.04 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.84 Total: -12.29 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -69.04 6.27 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.973 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds