Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39062 * 119.65669 * 2 1 4 4 C 1.36187 * 121.14287 * 179.97438 * 3 2 1 5 5 C 1.40567 * 120.06929 * 0.04944 * 4 3 2 6 6 C 1.40572 * 121.17771 * 180.02562 * 5 4 3 7 7 C 1.36117 * 119.65991 * 179.97438 * 6 5 4 8 8 C 1.39320 * 120.95803 * 0.02562 * 7 6 5 9 9 C 1.36211 * 120.93683 * 359.96941 * 8 7 6 10 10 C 1.40224 * 119.68237 * 0.05075 * 9 8 7 11 11 C 1.38356 * 119.65830 * 179.72999 * 2 1 3 12 12 C 1.48106 * 120.34975 * 359.97438 * 11 2 1 13 13 C 1.39508 * 120.07353 * 244.72627 * 12 11 2 14 14 C 1.37873 * 119.91759 * 179.69705 * 13 12 11 15 15 C 1.38867 * 120.07681 * 0.60007 * 14 13 12 16 16 O 1.35858 * 119.92255 * 179.69474 * 15 14 13 17 17 C 1.42903 * 117.00248 * 359.97438 * 16 15 14 18 18 C 1.50692 * 109.47380 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99926 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00123 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99796 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46895 * 90.00307 * 22 20 18 24 24 H 1.48504 * 109.47060 * 209.99931 * 22 20 18 25 25 H 1.48502 * 109.47348 * 330.00285 * 22 20 18 26 26 C 1.38855 * 120.15232 * 359.67803 * 15 14 13 27 27 C 1.37869 * 120.07893 * 0.02562 * 26 15 14 28 28 H 1.09002 * 109.47152 * 89.99929 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00029 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00010 * 1 2 3 31 31 H 1.07994 * 119.42587 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.96342 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.17137 * 0.02562 * 6 5 4 34 34 H 1.08004 * 119.52519 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.53032 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.15877 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.04540 * 0.02562 * 13 12 11 38 38 H 1.08004 * 119.96250 * 180.32063 * 14 13 12 39 39 H 1.09001 * 109.47165 * 299.99829 * 17 16 15 40 40 H 1.09007 * 109.47183 * 59.99572 * 17 16 15 41 41 H 0.97007 * 119.99828 * 179.97438 * 21 20 18 42 42 H 1.07996 * 119.96207 * 180.02562 * 26 15 14 43 43 H 1.08001 * 120.03656 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2085 0.0000 4 6 3.5565 1.2438 0.0005 5 6 4.2921 0.0460 0.0000 6 6 5.6978 0.0552 0.0011 7 6 6.3792 -1.1231 0.0011 8 6 5.7037 -2.3416 -0.0005 9 6 4.3423 -2.3875 -0.0014 10 6 3.6073 -1.1934 -0.0019 11 6 2.1917 -1.2023 0.0057 12 6 1.4513 -2.4850 0.0123 13 6 1.5487 -3.3427 1.1082 14 6 0.8532 -4.5332 1.1137 15 6 0.0663 -4.8845 0.0247 16 8 -0.6128 -6.0611 0.0308 17 6 -0.4706 -6.8864 1.1887 18 6 -1.2902 -8.1391 1.0165 19 1 -1.8622 -8.2903 0.1130 20 6 -1.3090 -9.0929 2.0121 21 7 -0.6121 -8.9090 3.1121 22 14 -2.3245 -10.6462 1.7983 23 1 -1.4949 -11.6948 1.1521 24 1 -2.7814 -11.1256 3.1274 25 1 -3.5042 -10.3529 0.9454 26 6 -0.0283 -4.0357 -1.0702 27 6 0.6597 -2.8410 -1.0798 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6402 2.1349 0.0004 32 1 4.0715 2.1932 0.0009 33 1 6.2345 0.9925 0.0027 34 1 7.4592 -1.1135 0.0015 35 1 6.2674 -3.2628 -0.0009 36 1 3.8315 -3.3391 -0.0022 37 1 2.1639 -3.0722 1.9536 38 1 0.9239 -5.1954 1.9639 39 1 0.5784 -7.1530 1.3183 40 1 -0.8184 -6.3428 2.0672 41 1 -0.6257 -9.5799 3.8126 42 1 -0.6414 -4.3118 -1.9153 43 1 0.5853 -2.1812 -1.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242982909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = 13.298848 kcal Electronic energy + Delta-G solvation = -24792.035044 eV Core-core repulsion = 21345.282263 eV Total energy + Delta-G solvation = -3446.752781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66910 -39.25380 -37.29694 -36.37415 -33.33830 -32.82709 -31.75744 -30.63085 -30.17151 -28.60977 -27.51871 -26.52629 -23.57948 -23.47747 -22.36819 -21.98632 -21.61256 -20.31390 -17.61881 -17.23546 -17.00034 -16.51073 -16.08219 -15.27662 -15.13215 -14.66345 -14.51388 -14.39697 -14.20429 -13.89397 -13.72585 -13.62699 -13.11182 -12.98648 -12.86223 -12.74296 -12.32201 -12.13681 -11.94404 -11.76146 -11.53736 -11.10752 -11.06117 -11.03100 -10.95853 -10.69932 -10.55865 -10.20640 -10.15036 -9.80799 -9.31372 -8.68913 -8.60064 -8.56656 -7.91624 -7.35933 -6.27905 -4.31822 0.42864 0.95980 1.67656 1.72380 2.08636 2.90937 3.22191 3.27516 3.32231 4.01717 4.12245 4.14749 4.46940 4.52645 4.70964 4.76236 4.84356 4.97683 5.02715 5.09426 5.20891 5.23682 5.28875 5.35554 5.37404 5.57272 5.61379 5.64121 5.71769 5.84792 5.89798 5.99909 6.04441 6.08846 6.13029 6.24231 6.36927 6.43423 6.47971 6.58626 6.64565 6.71860 6.80942 6.88460 6.95347 6.97031 7.10308 7.21097 7.64863 7.91830 8.42258 8.80569 9.33623 10.83270 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002719 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.162439 B =10295.134773 C =11172.802543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.054 4.054 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.124 4.124 9 C -0.096 4.096 10 C -0.039 4.039 11 C -0.014 4.014 12 C -0.115 4.115 13 C -0.061 4.061 14 C -0.212 4.212 15 C 0.161 3.839 16 O -0.315 6.315 17 C 0.192 3.808 18 C -0.525 4.525 19 H 0.071 0.929 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.913 3.087 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.270 1.270 26 C -0.169 4.169 27 C -0.063 4.063 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.267 0.733 42 H 0.127 0.873 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 20.142 -5.880 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.054 4.054 6 C -0.130 4.130 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.113 4.113 10 C -0.039 4.039 11 C -0.014 4.014 12 C -0.115 4.115 13 C -0.079 4.079 14 C -0.231 4.231 15 C 0.112 3.888 16 O -0.228 6.228 17 C 0.120 3.880 18 C -0.563 4.563 19 H 0.089 0.911 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.740 3.260 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.188 4.188 27 C -0.081 4.081 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.981 19.940 -5.832 23.048 hybrid contribution -0.213 -0.834 0.326 0.920 sum 9.768 19.106 -5.506 22.154 Atomic orbital electron populations 1.20846 0.90895 1.03055 1.02383 1.19950 0.96251 0.91919 0.99853 1.20646 0.94244 0.97285 1.00444 1.20949 0.94135 0.96890 1.01238 1.18017 0.93508 0.92764 1.01113 1.20975 0.92767 0.98356 1.00950 1.20831 0.99888 0.92547 1.00262 1.20894 0.94567 0.97989 1.00702 1.21176 0.94133 0.97867 0.98166 1.18050 0.92499 0.92933 1.00401 1.18681 0.91127 0.92224 0.99330 1.18290 1.02346 0.94530 0.96347 1.20924 0.97408 0.92697 0.96878 1.21406 1.02114 0.99324 1.00233 1.19394 0.89629 0.86712 0.93028 1.86121 1.63987 1.26968 1.45699 1.20670 0.97697 0.88417 0.81232 1.20972 1.29187 1.01817 1.04350 0.91125 1.24936 0.95805 0.98833 0.94604 1.69947 1.40591 1.35669 1.07002 0.86248 0.80199 0.81945 0.77629 1.20258 1.20881 1.19471 1.20340 1.04958 0.94863 0.98658 1.20816 0.94917 0.95383 0.96950 0.91162 0.91866 0.90721 0.86051 0.85874 0.85877 0.86231 0.86023 0.85106 0.86394 0.84678 0.96006 0.95995 0.92293 0.85473 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.01 36.01 0.32 -0.89 16 2 C -0.08 -0.95 5.90 -104.27 -0.61 -1.57 16 3 C -0.11 -1.12 9.57 -40.01 -0.38 -1.50 16 4 C -0.11 -1.17 9.75 -39.44 -0.38 -1.55 16 5 C -0.05 -0.64 5.74 -106.86 -0.61 -1.26 16 6 C -0.11 -1.14 9.77 -39.46 -0.39 -1.53 16 7 C -0.12 -1.17 9.95 -39.94 -0.40 -1.56 16 8 C -0.12 -1.38 9.95 -39.91 -0.40 -1.78 16 9 C -0.10 -1.24 9.14 -39.57 -0.36 -1.60 16 10 C -0.04 -0.52 5.75 -106.60 -0.61 -1.13 16 11 C -0.01 -0.18 5.34 -104.54 -0.56 -0.74 16 12 C -0.11 -1.68 3.27 -104.90 -0.34 -2.03 16 13 C -0.06 -0.97 8.43 -39.24 -0.33 -1.30 16 14 C -0.21 -3.94 9.02 -39.48 -0.36 -4.30 16 15 C 0.16 3.21 6.69 -39.12 -0.26 2.95 16 16 O -0.32 -7.54 10.11 -19.29 -0.20 -7.73 16 17 C 0.19 5.05 4.49 36.00 0.16 5.22 16 18 C -0.53 -14.89 9.43 -34.44 -0.32 -15.21 16 19 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 22 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.17 -2.84 9.97 -39.49 -0.39 -3.23 16 27 C -0.06 -0.91 8.76 -39.25 -0.34 -1.25 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.07 0.90 6.85 -51.93 -0.36 0.55 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.78 6.40 -52.49 -0.34 1.44 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.14 2.66 6.28 -52.48 -0.33 2.33 16 39 H 0.02 0.60 7.66 -51.93 -0.40 0.20 16 40 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.04 361.29 -11.30 -41.33 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.59 Total: 2.48 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -6.67 Total: -32.67 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.97 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.20 Total: -7.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.04 -11.30 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.630 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds