Wall clock time and date at job start Tue Mar 31 2020 12:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39062 * 119.65669 * 2 1 4 4 C 1.36187 * 121.14287 * 179.97438 * 3 2 1 5 5 C 1.40567 * 120.06929 * 0.04944 * 4 3 2 6 6 C 1.40572 * 121.17771 * 180.02562 * 5 4 3 7 7 C 1.36117 * 119.65991 * 179.97438 * 6 5 4 8 8 C 1.39320 * 120.95803 * 0.02562 * 7 6 5 9 9 C 1.36211 * 120.93683 * 359.96941 * 8 7 6 10 10 C 1.40224 * 119.68237 * 0.05075 * 9 8 7 11 11 C 1.38356 * 119.65830 * 179.72999 * 2 1 3 12 12 C 1.48106 * 120.34975 * 359.97438 * 11 2 1 13 13 C 1.39508 * 120.07353 * 244.72627 * 12 11 2 14 14 C 1.37873 * 119.91759 * 179.69705 * 13 12 11 15 15 C 1.38867 * 120.07681 * 0.60007 * 14 13 12 16 16 O 1.35858 * 119.92255 * 179.69474 * 15 14 13 17 17 C 1.42903 * 117.00248 * 359.97438 * 16 15 14 18 18 C 1.50692 * 109.47380 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99926 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00123 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99796 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46895 * 90.00307 * 22 20 18 24 24 H 1.48504 * 109.47060 * 209.99931 * 22 20 18 25 25 H 1.48502 * 109.47348 * 330.00285 * 22 20 18 26 26 C 1.38855 * 120.15232 * 359.67803 * 15 14 13 27 27 C 1.37869 * 120.07893 * 0.02562 * 26 15 14 28 28 H 1.09002 * 109.47152 * 89.99929 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00029 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00010 * 1 2 3 31 31 H 1.07994 * 119.42587 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.96342 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.17137 * 0.02562 * 6 5 4 34 34 H 1.08004 * 119.52519 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.53032 * 179.97438 * 8 7 6 36 36 H 1.08002 * 120.15877 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.04540 * 0.02562 * 13 12 11 38 38 H 1.08004 * 119.96250 * 180.32063 * 14 13 12 39 39 H 1.09001 * 109.47165 * 299.99829 * 17 16 15 40 40 H 1.09007 * 109.47183 * 59.99572 * 17 16 15 41 41 H 0.97007 * 119.99828 * 179.97438 * 21 20 18 42 42 H 1.07996 * 119.96207 * 180.02562 * 26 15 14 43 43 H 1.08001 * 120.03656 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2085 0.0000 4 6 3.5565 1.2438 0.0005 5 6 4.2921 0.0460 0.0000 6 6 5.6978 0.0552 0.0011 7 6 6.3792 -1.1231 0.0011 8 6 5.7037 -2.3416 -0.0005 9 6 4.3423 -2.3875 -0.0014 10 6 3.6073 -1.1934 -0.0019 11 6 2.1917 -1.2023 0.0057 12 6 1.4513 -2.4850 0.0123 13 6 1.5487 -3.3427 1.1082 14 6 0.8532 -4.5332 1.1137 15 6 0.0663 -4.8845 0.0247 16 8 -0.6128 -6.0611 0.0308 17 6 -0.4706 -6.8864 1.1887 18 6 -1.2902 -8.1391 1.0165 19 1 -1.8622 -8.2903 0.1130 20 6 -1.3090 -9.0929 2.0121 21 7 -0.6121 -8.9090 3.1121 22 14 -2.3245 -10.6462 1.7983 23 1 -1.4949 -11.6948 1.1521 24 1 -2.7814 -11.1256 3.1274 25 1 -3.5042 -10.3529 0.9454 26 6 -0.0283 -4.0357 -1.0702 27 6 0.6597 -2.8410 -1.0798 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6402 2.1349 0.0004 32 1 4.0715 2.1932 0.0009 33 1 6.2345 0.9925 0.0027 34 1 7.4592 -1.1135 0.0015 35 1 6.2674 -3.2628 -0.0009 36 1 3.8315 -3.3391 -0.0022 37 1 2.1639 -3.0722 1.9536 38 1 0.9239 -5.1954 1.9639 39 1 0.5784 -7.1530 1.3183 40 1 -0.8184 -6.3428 2.0672 41 1 -0.6257 -9.5799 3.8126 42 1 -0.6414 -4.3118 -1.9153 43 1 0.5853 -2.1812 -1.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242982909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:15 Heat of formation + Delta-G solvation = 0.487684 kcal Electronic energy + Delta-G solvation = -24792.590578 eV Core-core repulsion = 21345.282263 eV Total energy + Delta-G solvation = -3447.308315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64143 -40.68354 -38.58168 -37.47208 -35.13033 -34.15757 -32.66369 -31.95944 -31.25496 -30.03727 -29.09810 -27.52182 -25.44939 -24.43544 -23.48826 -23.12878 -22.79930 -21.48249 -19.23743 -18.52089 -18.24853 -17.85565 -17.10577 -16.85282 -16.49884 -16.32143 -16.13801 -15.46129 -15.23518 -14.91607 -14.70505 -14.62704 -14.50636 -14.25930 -13.86767 -13.79131 -13.62312 -13.50436 -13.19008 -13.06206 -12.92421 -12.81954 -12.46652 -12.35719 -12.03197 -11.96541 -11.78586 -11.71828 -11.59311 -11.36915 -10.77644 -10.70431 -10.01218 -9.40966 -9.11831 -8.54329 -8.41692 -6.56382 -0.45044 0.11053 0.35894 0.38048 1.14260 1.37886 1.40806 1.52905 2.07767 2.25268 2.70787 2.73842 2.93118 3.18252 3.56626 3.84331 3.86921 3.94418 3.97386 4.02229 4.14718 4.24827 4.33075 4.41906 4.44808 4.50171 4.59488 4.65976 4.70383 4.77459 4.81469 4.83531 4.93435 5.02689 5.04598 5.15982 5.20777 5.27062 5.36528 5.40751 5.42183 5.50362 5.51775 5.59094 5.65472 5.76552 5.80559 5.84913 5.98503 6.13476 6.47644 6.76029 7.15828 8.70579 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002719 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.162439 B =10295.134773 C =11172.802543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.117 4.117 4 C -0.102 4.102 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.128 4.128 10 C -0.053 4.053 11 C -0.051 4.051 12 C -0.087 4.087 13 C -0.063 4.063 14 C -0.221 4.221 15 C 0.116 3.884 16 O -0.335 6.335 17 C 0.213 3.787 18 C -0.558 4.558 19 H 0.067 0.933 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.988 3.012 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.263 1.263 26 C -0.162 4.162 27 C -0.055 4.055 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.000 1.000 40 H 0.001 0.999 41 H 0.274 0.726 42 H 0.141 0.859 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 22.971 -6.988 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.075 4.075 6 C -0.123 4.123 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.146 4.146 10 C -0.053 4.053 11 C -0.051 4.051 12 C -0.087 4.087 13 C -0.081 4.081 14 C -0.240 4.240 15 C 0.069 3.931 16 O -0.249 6.249 17 C 0.139 3.861 18 C -0.596 4.596 19 H 0.086 0.914 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.810 3.190 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.187 1.187 26 C -0.180 4.180 27 C -0.073 4.073 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.018 0.982 40 H 0.019 0.981 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.889 22.797 -6.948 26.202 hybrid contribution -0.308 -1.434 0.653 1.606 sum 10.580 21.363 -6.295 24.657 Atomic orbital electron populations 1.20890 0.90144 1.03021 1.03219 1.20206 0.96916 0.92009 0.98219 1.20963 0.94647 0.97619 1.00246 1.21372 0.94268 0.97561 0.98722 1.18352 0.94639 0.92730 1.01797 1.21383 0.92173 0.99772 0.98987 1.21162 1.01402 0.91876 0.99868 1.21164 0.94034 0.99472 0.99309 1.21126 0.95148 0.97301 1.01042 1.18198 0.92514 0.93788 1.00797 1.18636 0.91491 0.91879 1.03093 1.18510 1.00491 0.94613 0.95096 1.20993 0.97112 0.92001 0.97992 1.21279 1.03107 1.00200 0.99437 1.19739 0.91633 0.86567 0.95119 1.86034 1.65744 1.28646 1.44500 1.20172 0.95952 0.88340 0.81613 1.21325 1.30195 1.03186 1.04870 0.91435 1.25982 0.96700 1.02292 0.93864 1.70059 1.41529 1.37039 1.07772 0.85106 0.78540 0.77184 0.78140 1.19110 1.19699 1.18685 1.20558 1.04878 0.94802 0.97794 1.21134 0.93771 0.94666 0.97719 0.89808 0.89767 0.92920 0.83077 0.82549 0.82637 0.83382 0.84908 0.87119 0.85542 0.87093 0.98182 0.98146 0.91696 0.84115 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.01 71.24 0.64 -1.55 16 2 C -0.07 -1.59 5.90 -19.64 -0.12 -1.71 16 3 C -0.12 -1.98 9.57 21.99 0.21 -1.77 16 4 C -0.10 -1.68 9.75 22.36 0.22 -1.46 16 5 C -0.08 -1.59 5.74 -21.31 -0.12 -1.71 16 6 C -0.11 -1.78 9.77 22.35 0.22 -1.56 16 7 C -0.13 -2.17 9.95 22.04 0.22 -1.95 16 8 C -0.12 -2.64 9.95 22.06 0.22 -2.42 16 9 C -0.13 -3.40 9.14 22.28 0.20 -3.19 16 10 C -0.05 -1.38 5.75 -21.15 -0.12 -1.50 16 11 C -0.05 -1.34 5.34 -19.81 -0.11 -1.45 16 12 C -0.09 -2.58 3.27 -20.05 -0.07 -2.65 16 13 C -0.06 -2.13 8.43 22.49 0.19 -1.94 16 14 C -0.22 -9.05 9.02 22.33 0.20 -8.85 16 15 C 0.12 4.97 6.69 22.57 0.15 5.12 16 16 O -0.34 -17.29 10.11 -91.95 -0.93 -18.22 16 17 C 0.21 12.11 4.49 71.23 0.32 12.43 16 18 C -0.56 -33.22 9.43 25.60 0.24 -32.98 16 19 H 0.07 3.95 7.81 -2.91 -0.02 3.92 16 20 C 0.01 0.64 5.46 84.66 0.46 1.10 16 21 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 22 Si 0.99 43.84 29.54 68.60 2.03 45.87 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 26 C -0.16 -5.58 9.97 22.33 0.22 -5.35 16 27 C -0.06 -1.58 8.76 22.49 0.20 -1.39 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.05 1.23 6.85 -2.38 -0.02 1.21 16 31 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.11 3.25 6.40 -2.91 -0.02 3.23 16 37 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.11 4.98 6.28 -2.91 -0.02 4.96 16 39 H 0.00 0.02 7.66 -2.39 -0.02 0.01 16 40 H 0.00 0.05 7.65 -2.38 -0.02 0.03 16 41 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.08 361.29 5.78 -63.30 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.01 Total: 18.63 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 3.38 Total: -54.78 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.80 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.93 Total: -18.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.08 5.78 -63.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242982909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.790 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds