Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38016 * 120.06807 * 2 1 4 4 C 1.50698 * 119.93214 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47258 * 179.72653 * 4 3 2 6 6 C 1.38316 * 120.13111 * 179.72002 * 3 2 1 7 7 C 1.38358 * 120.27095 * 0.23313 * 6 3 2 8 8 C 1.37973 * 120.13001 * 359.97438 * 7 6 3 9 9 C 1.39429 * 120.06729 * 180.20488 * 2 1 3 10 10 C 1.48166 * 120.13294 * 0.02562 * 9 2 1 11 11 C 1.36676 * 120.34418 * 245.02696 * 10 9 2 12 12 C 1.41128 * 120.59098 * 179.76655 * 11 10 9 13 13 C 1.41212 * 119.49026 * 180.26013 * 12 11 10 14 14 H 1.07998 * 120.00199 * 25.87692 * 13 12 11 15 15 C 1.39930 * 119.99691 * 205.88630 * 13 12 11 16 16 N 1.30839 * 120.00588 * 18.21249 * 15 13 12 17 17 Si 1.86801 * 119.99816 * 198.21952 * 15 13 12 18 18 H 1.48502 * 109.47457 * 59.99593 * 17 15 13 19 19 H 1.48502 * 109.47235 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47076 * 299.99646 * 17 15 13 21 21 C 1.39957 * 121.01851 * 0.48945 * 12 11 10 22 22 C 1.39890 * 120.11366 * 359.77037 * 21 12 11 23 23 C 1.40856 * 121.14929 * 179.97438 * 22 21 12 24 24 C 1.36190 * 119.61128 * 180.02562 * 23 22 21 25 25 C 1.39246 * 120.94132 * 0.02562 * 24 23 22 26 26 C 1.36536 * 120.98114 * 359.97438 * 25 24 23 27 27 C 1.39807 * 119.73345 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47183 * 89.99972 * 1 2 3 29 29 H 1.09000 * 109.47329 * 209.99906 * 1 2 3 30 30 H 1.09003 * 109.47177 * 330.00284 * 1 2 3 31 31 H 1.09000 * 109.47183 * 59.72339 * 4 3 2 32 32 H 1.09006 * 109.47213 * 299.72520 * 4 3 2 33 33 H 0.96701 * 114.00086 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.86326 * 180.25390 * 6 3 2 35 35 H 1.07995 * 119.94009 * 180.02562 * 7 6 3 36 36 H 1.07992 * 120.07004 * 180.02562 * 8 7 6 37 37 H 1.08003 * 119.70444 * 359.97438 * 11 10 9 38 38 H 0.96994 * 120.00228 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.94762 * 179.75148 * 21 12 11 40 40 H 1.08005 * 120.19315 * 0.03789 * 23 22 21 41 41 H 1.08000 * 119.53323 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.50917 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.13175 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1944 0.0000 4 6 1.4450 2.4995 -0.0006 5 8 2.3735 3.5857 0.0060 6 6 3.5816 1.1960 0.0058 7 6 4.2804 0.0018 0.0069 8 6 3.6002 -1.1986 0.0026 9 6 2.2055 -1.2067 -0.0043 10 6 1.4692 -2.4924 -0.0095 11 6 1.5577 -3.3431 1.0566 12 6 0.8547 -4.5668 1.0593 13 6 0.9586 -5.4257 2.1753 14 1 1.1940 -5.0207 3.1484 15 6 0.7566 -6.8017 2.0203 16 7 0.8263 -7.3434 0.8314 17 14 0.3871 -7.8651 3.5110 18 1 -0.8609 -7.3902 4.1609 19 1 0.2150 -9.2763 3.0819 20 1 1.5128 -7.7742 4.4752 21 6 0.0600 -4.9444 -0.0292 22 6 -0.0522 -4.1035 -1.1415 23 6 -0.8455 -4.4620 -2.2488 24 6 -0.9319 -3.6197 -3.3155 25 6 -0.2464 -2.4078 -3.3282 26 6 0.5313 -2.0291 -2.2718 27 6 0.6439 -2.8669 -1.1582 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.8142 2.5553 0.8866 32 1 0.8223 2.5592 -0.8933 33 1 1.9577 4.4587 0.0064 34 1 4.1183 2.1332 0.0100 35 1 5.3603 0.0092 0.0119 36 1 4.1466 -2.1301 0.0038 37 1 2.1686 -3.0749 1.9060 38 1 0.6859 -8.2971 0.7240 39 1 -0.4674 -5.8867 -0.0105 40 1 -1.3822 -5.3993 -2.2518 41 1 -1.5402 -3.8961 -4.1641 42 1 -0.3311 -1.7576 -4.1864 43 1 1.0567 -1.0858 -2.2960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243016253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -15.894909 kcal Electronic energy + Delta-G solvation = -25671.223630 eV Core-core repulsion = 22223.204913 eV Total energy + Delta-G solvation = -3448.018717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.16847 -39.95525 -37.64579 -37.32557 -35.35355 -34.11453 -33.43498 -31.56486 -31.16135 -29.66013 -27.85946 -27.10274 -26.70703 -24.15071 -23.23362 -22.92121 -21.68959 -21.09717 -19.22948 -18.32824 -17.80675 -17.72010 -16.95968 -16.67317 -16.18252 -15.96883 -15.88982 -15.67843 -15.05064 -14.89409 -14.47685 -14.25701 -14.19235 -14.01917 -13.92883 -13.62362 -13.30365 -13.14325 -12.98902 -12.91787 -12.78837 -12.65014 -12.49394 -12.17526 -12.00086 -11.80221 -11.57217 -11.38986 -11.23060 -11.15556 -10.91415 -10.34114 -9.51033 -9.45607 -9.24605 -8.68662 -8.41998 -6.31440 -0.05650 0.41374 0.47345 0.59973 1.34425 1.39084 1.47824 1.55824 2.16450 2.29896 2.79368 3.02877 3.31664 3.72885 3.86670 3.96770 3.99648 4.12720 4.21208 4.26160 4.31456 4.35639 4.48057 4.57381 4.63405 4.69505 4.75957 4.80692 4.85208 4.87234 4.94085 4.97343 5.06417 5.17182 5.24868 5.30137 5.35904 5.53408 5.58195 5.59978 5.68917 5.75736 5.76122 5.87144 5.99784 6.07477 6.09394 6.26274 6.44774 6.65229 6.86436 6.94985 6.97224 8.28212 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.004150 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.388053 B = 6745.141517 C = 8052.096636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.101 4.101 4 C 0.124 3.876 5 O -0.584 6.584 6 C -0.104 4.104 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.046 4.046 10 C -0.030 4.030 11 C -0.155 4.155 12 C 0.080 3.920 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.036 3.964 16 N -0.815 5.815 17 Si 0.980 3.020 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.235 4.235 22 C -0.021 4.021 23 C -0.161 4.161 24 C -0.105 4.105 25 C -0.180 4.180 26 C -0.077 4.077 27 C -0.130 4.130 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 15.499 -3.160 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.101 4.101 4 C 0.047 3.953 5 O -0.393 6.393 6 C -0.121 4.121 7 C -0.142 4.142 8 C -0.141 4.141 9 C -0.046 4.046 10 C -0.031 4.031 11 C -0.174 4.174 12 C 0.077 3.923 13 C -0.518 4.518 14 H 0.097 0.903 15 C -0.180 4.180 16 N -0.440 5.440 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.255 4.255 22 C -0.021 4.021 23 C -0.180 4.180 24 C -0.123 4.123 25 C -0.198 4.198 26 C -0.095 4.095 27 C -0.131 4.131 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.201 14.787 -3.277 15.148 hybrid contribution -0.351 -0.968 0.775 1.289 sum -0.151 13.819 -2.502 14.044 Atomic orbital electron populations 1.20856 0.90476 1.02569 1.02906 1.19736 0.96423 0.91044 1.00101 1.19761 0.94534 0.93875 1.01895 1.20847 0.89787 0.83156 1.01479 1.86379 1.37030 1.18083 1.97827 1.21154 0.93764 0.98379 0.98851 1.21281 1.00880 0.91516 1.00539 1.21356 0.93119 0.98870 1.00753 1.18708 0.93159 0.91595 1.01128 1.19376 0.96906 0.93017 0.93761 1.21171 1.01920 0.95953 0.98322 1.17673 0.89355 0.91467 0.93763 1.19863 1.43465 0.92601 0.95855 0.90345 1.26747 0.91604 0.99669 1.00024 1.69905 1.33916 1.14130 1.26000 0.85282 0.80037 0.76740 0.77888 1.18476 1.19171 1.18178 1.21052 1.06738 1.01380 0.96363 1.18210 0.95678 0.93575 0.94638 1.21056 1.01860 1.00413 0.94654 1.20905 0.99356 0.94307 0.97719 1.20833 1.01269 0.98132 0.99542 1.20835 0.97852 0.98104 0.92700 1.18752 1.02851 0.95810 0.95683 0.90289 0.93662 0.89418 0.90979 0.90725 0.74726 0.84025 0.83804 0.86939 0.88100 0.90061 0.88342 0.87259 0.84426 0.84311 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 8.13 71.23 0.58 -2.63 16 2 C -0.07 -2.29 4.98 -19.63 -0.10 -2.38 16 3 C -0.10 -2.69 5.87 -19.90 -0.12 -2.80 16 4 C 0.12 2.31 6.16 71.24 0.44 2.75 16 5 O -0.58 -9.81 12.13 -148.98 -1.81 -11.62 16 6 C -0.10 -2.77 9.37 22.32 0.21 -2.56 16 7 C -0.12 -3.49 10.03 22.24 0.22 -3.27 16 8 C -0.12 -4.22 9.73 22.51 0.22 -4.00 16 9 C -0.05 -1.71 4.54 -20.05 -0.09 -1.80 16 10 C -0.03 -1.35 4.20 -18.90 -0.08 -1.43 16 11 C -0.16 -7.67 9.31 22.61 0.21 -7.46 16 12 C 0.08 4.36 5.55 -21.42 -0.12 4.24 16 13 C -0.49 -26.47 8.99 23.41 0.21 -26.26 16 14 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 15 C 0.04 1.80 5.09 85.25 0.43 2.24 16 16 N -0.81 -43.30 11.00 21.82 0.24 -43.06 16 17 Si 0.98 38.32 29.60 68.60 2.03 40.35 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 C -0.23 -12.85 8.39 23.09 0.19 -12.66 16 22 C -0.02 -1.02 5.74 -21.33 -0.12 -1.14 16 23 C -0.16 -6.88 9.78 22.43 0.22 -6.66 16 24 C -0.11 -3.68 9.95 22.03 0.22 -3.46 16 25 C -0.18 -6.00 9.96 22.11 0.22 -5.78 16 26 C -0.08 -2.89 7.64 22.25 0.17 -2.72 16 27 C -0.13 -5.84 5.36 -19.89 -0.11 -5.95 16 28 H 0.08 2.16 6.75 -2.39 -0.02 2.14 16 29 H 0.04 1.59 6.96 -2.39 -0.02 1.57 16 30 H 0.09 1.92 6.63 -2.39 -0.02 1.90 16 31 H 0.07 1.16 7.47 -2.39 -0.02 1.14 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.40 2.56 9.12 -74.06 -0.68 1.88 16 34 H 0.14 3.34 6.99 -2.91 -0.02 3.32 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.11 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 39 H 0.10 5.67 6.15 -2.91 -0.02 5.66 16 40 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.12 4.09 6.17 -2.91 -0.02 4.07 16 Total: -1.00 -65.47 351.77 3.65 -61.82 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.37 Total: 36.24 kcal Atomic # 6 Polarization: -86.54 SS G_CDS: 2.81 Total: -83.73 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.81 Total: -11.62 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -65.47 3.65 -61.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243016253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.924 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds