Wall clock time and date at job start Tue Mar 31 2020 12:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38005 * 119.93473 * 2 1 4 4 C 1.39427 * 119.86831 * 179.97438 * 3 2 1 5 5 C 1.48182 * 120.13140 * 179.97438 * 4 3 2 6 6 C 1.36673 * 120.33811 * 309.74904 * 5 4 3 7 7 C 1.41125 * 120.58228 * 179.79280 * 6 5 4 8 8 C 1.41215 * 119.48900 * 180.23532 * 7 6 5 9 9 H 1.08007 * 120.00263 * 333.49672 * 8 7 6 10 10 C 1.39927 * 120.00073 * 153.49167 * 8 7 6 11 11 N 1.30837 * 120.00100 * 342.91291 * 10 8 7 12 12 Si 1.86808 * 119.99931 * 162.90793 * 10 8 7 13 13 H 1.48497 * 109.47022 * 90.00229 * 12 10 8 14 14 H 1.48506 * 109.47060 * 210.00318 * 12 10 8 15 15 H 1.48494 * 109.47129 * 330.00244 * 12 10 8 16 16 C 1.39963 * 121.02345 * 0.44265 * 7 6 5 17 17 C 1.39886 * 120.10993 * 359.81225 * 16 7 6 18 18 C 1.40855 * 121.14655 * 179.97438 * 17 16 7 19 19 C 1.36189 * 119.61142 * 180.02562 * 18 17 16 20 20 C 1.39248 * 120.94253 * 359.97438 * 19 18 17 21 21 C 1.36543 * 120.97660 * 0.02562 * 20 19 18 22 22 C 1.39807 * 119.73426 * 359.95858 * 21 20 19 23 23 C 1.39464 * 119.73757 * 359.97438 * 4 3 2 24 24 C 1.37973 * 119.86553 * 0.02562 * 23 4 3 25 25 C 1.38321 * 119.93277 * 180.26765 * 2 1 3 26 26 C 1.50701 * 119.87053 * 0.02562 * 25 2 1 27 27 O 1.42901 * 109.47174 * 180.27252 * 26 25 2 28 28 H 1.09004 * 109.46815 * 90.00844 * 1 2 3 29 29 H 1.09002 * 109.47416 * 209.99956 * 1 2 3 30 30 H 1.08994 * 109.47767 * 330.00495 * 1 2 3 31 31 H 1.08003 * 120.06756 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.70838 * 359.97219 * 6 5 4 33 33 H 0.96999 * 119.99694 * 179.97438 * 11 10 8 34 34 H 1.07999 * 119.94510 * 179.79594 * 16 7 6 35 35 H 1.08000 * 120.19511 * 0.04749 * 18 17 16 36 36 H 1.07996 * 119.52906 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.50983 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.12654 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.06681 * 179.97438 * 23 4 3 40 40 H 1.07997 * 119.93319 * 180.02562 * 24 23 4 41 41 H 1.08997 * 109.47271 * 300.27532 * 26 25 2 42 42 H 1.09003 * 109.47243 * 60.27591 * 26 25 2 43 43 H 0.96703 * 113.99874 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1959 0.0000 4 6 3.5899 1.1943 0.0005 5 6 4.3353 2.4751 0.0000 6 6 4.0310 3.4505 -0.9077 7 6 4.7345 4.6738 -0.9101 8 6 4.3977 5.6677 -1.8551 9 1 3.9541 5.3871 -2.7990 10 6 4.6384 7.0159 -1.5685 11 7 4.8537 7.3942 -0.3346 12 14 4.6527 8.2759 -2.9476 13 1 3.2832 8.8177 -3.1373 14 1 5.5789 9.3827 -2.5973 15 1 5.1076 7.6289 -4.2044 16 6 5.7639 4.9157 0.0069 17 6 6.1087 3.9402 0.9483 18 6 7.1412 4.1603 1.8808 19 6 7.4513 3.1886 2.7833 20 6 6.7615 1.9791 2.7985 21 6 5.7553 1.7327 1.9091 22 6 5.4081 2.7063 0.9677 23 6 4.2803 -0.0175 0.0016 24 6 3.5808 -1.2067 0.0016 25 6 2.1972 -1.1987 -0.0056 26 6 1.4392 -2.5012 -0.0123 27 8 2.3641 -3.5906 -0.0108 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6557 2.1313 -0.0004 32 1 3.2432 3.2847 -1.6276 33 1 5.0209 8.3288 -0.1360 34 1 6.2931 5.8570 -0.0126 35 1 7.6836 5.0942 1.8802 36 1 8.2435 3.3586 3.4973 37 1 7.0263 1.2249 3.5246 38 1 5.2290 0.7899 1.9335 39 1 5.3603 -0.0249 0.0016 40 1 4.1143 -2.1457 0.0029 41 1 0.8083 -2.5590 0.8747 42 1 0.8164 -2.5546 -0.9052 43 1 1.9452 -4.4621 -0.0145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243192973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:21 Heat of formation + Delta-G solvation = -4.625810 kcal Electronic energy + Delta-G solvation = -25162.822474 eV Core-core repulsion = 21715.292422 eV Total energy + Delta-G solvation = -3447.530053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.68509 -38.58565 -36.72810 -35.68960 -33.96710 -32.74129 -31.61687 -30.34499 -29.56140 -28.23496 -26.87923 -25.69805 -25.01070 -22.29223 -21.84139 -21.37737 -20.75015 -19.51459 -17.59673 -17.44162 -16.19093 -16.00623 -15.71433 -15.18877 -15.00469 -14.80957 -14.53288 -14.11130 -13.63256 -13.47223 -13.22072 -13.02075 -12.77071 -12.47772 -12.38449 -12.23682 -12.10689 -12.06715 -11.61126 -11.53920 -11.22876 -10.93369 -10.83291 -10.79619 -10.70544 -10.47523 -10.40244 -9.96377 -9.65563 -9.54376 -9.20755 -8.72574 -8.42516 -8.11373 -7.49416 -6.88230 -6.64799 -4.41077 1.33851 1.70292 1.91487 2.29780 2.94282 3.01538 3.06669 3.25823 3.83480 3.98686 4.08057 4.10598 4.79046 4.89716 5.01570 5.13339 5.20213 5.30247 5.36080 5.52173 5.59783 5.63370 5.74116 5.77751 5.78984 5.85767 5.93476 6.02999 6.22382 6.28102 6.40145 6.42046 6.59674 6.65286 6.72001 6.81001 6.85994 6.95078 7.00082 7.07998 7.26461 7.32210 7.40570 7.45242 7.47839 7.54056 7.69649 7.89135 8.06404 8.14565 8.50012 8.71877 8.78415 10.06341 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003914 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.451165 B = 7151.878015 C = 8924.219485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.112 4.112 4 C -0.009 4.009 5 C -0.056 4.056 6 C -0.124 4.124 7 C 0.100 3.900 8 C -0.450 4.450 9 H 0.080 0.920 10 C 0.074 3.926 11 N -0.780 5.780 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.202 4.202 17 C 0.001 3.999 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.190 4.190 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.094 4.094 25 C -0.112 4.112 26 C 0.124 3.876 27 O -0.569 6.569 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.283 0.717 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -12.618 0.972 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.130 4.130 4 C -0.009 4.009 5 C -0.056 4.056 6 C -0.142 4.142 7 C 0.098 3.902 8 C -0.479 4.479 9 H 0.098 0.902 10 C -0.146 4.146 11 N -0.404 5.404 12 Si 0.732 3.268 13 H -0.194 1.194 14 H -0.200 1.200 15 H -0.183 1.183 16 C -0.222 4.222 17 C 0.000 4.000 18 C -0.156 4.156 19 C -0.137 4.137 20 C -0.208 4.208 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.112 4.112 25 C -0.112 4.112 26 C 0.046 3.954 27 O -0.374 6.374 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.215 -11.893 1.109 13.034 hybrid contribution -0.413 0.345 -0.462 0.710 sum -5.629 -11.548 0.647 12.863 Atomic orbital electron populations 1.20796 0.91568 1.02592 1.02154 1.19451 0.95537 0.92215 1.01185 1.21112 0.93318 0.97265 1.01269 1.18955 0.92626 0.92864 0.96427 1.19202 0.96490 0.92253 0.97662 1.21168 0.99838 0.94355 0.98873 1.17387 0.89659 0.90658 0.92505 1.19632 1.35261 0.90627 1.02339 0.90205 1.25914 0.92629 0.99863 0.96146 1.69835 1.32601 1.18731 1.19212 0.86311 0.79047 0.79637 0.81822 1.19412 1.19952 1.18338 1.21172 1.01100 0.99492 1.00482 1.17925 0.93956 0.93056 0.95022 1.20906 0.99046 0.98701 0.96930 1.20494 0.99801 0.94389 0.99032 1.20353 1.00529 0.97908 1.02048 1.20810 0.96634 0.97851 0.94807 1.18467 0.99185 0.95105 0.98974 1.21347 1.00079 0.91446 1.00817 1.20825 0.93394 0.97971 0.98981 1.19429 0.94235 0.92765 1.04792 1.20846 0.90191 0.84688 0.99632 1.86481 1.36414 1.16785 1.97743 0.91252 0.91961 0.91329 0.85716 0.87936 0.90610 0.86099 0.87325 0.88152 0.88232 0.87321 0.85793 0.85445 0.92696 0.92705 0.77490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.59 36.01 0.35 -0.87 16 2 C -0.08 -1.20 5.87 -104.68 -0.61 -1.81 16 3 C -0.11 -1.89 9.14 -39.22 -0.36 -2.25 16 4 C -0.01 -0.16 5.09 -104.91 -0.53 -0.70 16 5 C -0.06 -1.23 5.59 -103.13 -0.58 -1.80 16 6 C -0.12 -2.88 9.11 -39.05 -0.36 -3.23 16 7 C 0.10 2.57 5.54 -107.03 -0.59 1.98 16 8 C -0.45 -11.38 8.99 -37.82 -0.34 -11.72 16 9 H 0.08 1.92 7.90 -52.48 -0.41 1.50 16 10 C 0.07 1.78 5.10 -17.34 -0.09 1.69 16 11 N -0.78 -19.57 11.00 55.55 0.61 -18.96 16 12 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 C -0.20 -5.21 8.38 -38.32 -0.32 -5.53 16 17 C 0.00 0.02 5.74 -106.89 -0.61 -0.60 16 18 C -0.14 -2.97 9.78 -39.33 -0.38 -3.35 16 19 C -0.12 -2.30 9.95 -39.94 -0.40 -2.69 16 20 C -0.19 -3.62 9.96 -39.82 -0.40 -4.02 16 21 C -0.08 -1.69 8.68 -39.61 -0.34 -2.03 16 22 C -0.12 -2.66 5.88 -104.66 -0.62 -3.28 16 23 C -0.12 -2.05 7.68 -39.22 -0.30 -2.35 16 24 C -0.09 -1.45 9.36 -39.63 -0.37 -1.82 16 25 C -0.11 -1.58 5.88 -104.54 -0.62 -2.20 16 26 C 0.12 1.29 6.16 36.01 0.22 1.51 16 27 O -0.57 -5.83 12.12 -35.23 -0.43 -6.25 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.54 6.63 -51.93 -0.34 0.20 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.12 2.08 8.04 -52.48 -0.42 1.65 16 32 H 0.10 2.21 8.01 -52.49 -0.42 1.79 16 33 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 34 H 0.12 3.22 6.19 -52.49 -0.32 2.90 16 35 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 2.04 5.70 -52.49 -0.30 1.74 16 39 H 0.12 2.12 7.31 -52.49 -0.38 1.73 16 40 H 0.13 1.85 6.99 -52.49 -0.37 1.48 16 41 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.38 1.88 9.12 45.56 0.42 2.30 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -28.83 355.70 -11.36 -40.19 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -4.62 Total: 11.80 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: -7.25 Total: -45.07 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.43 Total: -6.25 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.83 -11.36 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243192973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.559 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds