Wall clock time and date at job start Tue Mar 31 2020 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38005 * 119.93473 * 2 1 4 4 C 1.39427 * 119.86831 * 179.97438 * 3 2 1 5 5 C 1.48182 * 120.13140 * 179.97438 * 4 3 2 6 6 C 1.36673 * 120.33811 * 309.74904 * 5 4 3 7 7 C 1.41125 * 120.58228 * 179.79280 * 6 5 4 8 8 C 1.41215 * 119.48900 * 180.23532 * 7 6 5 9 9 H 1.08007 * 120.00263 * 333.49672 * 8 7 6 10 10 C 1.39927 * 120.00073 * 153.49167 * 8 7 6 11 11 N 1.30837 * 120.00100 * 342.91291 * 10 8 7 12 12 Si 1.86808 * 119.99931 * 162.90793 * 10 8 7 13 13 H 1.48497 * 109.47022 * 90.00229 * 12 10 8 14 14 H 1.48506 * 109.47060 * 210.00318 * 12 10 8 15 15 H 1.48494 * 109.47129 * 330.00244 * 12 10 8 16 16 C 1.39963 * 121.02345 * 0.44265 * 7 6 5 17 17 C 1.39886 * 120.10993 * 359.81225 * 16 7 6 18 18 C 1.40855 * 121.14655 * 179.97438 * 17 16 7 19 19 C 1.36189 * 119.61142 * 180.02562 * 18 17 16 20 20 C 1.39248 * 120.94253 * 359.97438 * 19 18 17 21 21 C 1.36543 * 120.97660 * 0.02562 * 20 19 18 22 22 C 1.39807 * 119.73426 * 359.95858 * 21 20 19 23 23 C 1.39464 * 119.73757 * 359.97438 * 4 3 2 24 24 C 1.37973 * 119.86553 * 0.02562 * 23 4 3 25 25 C 1.38321 * 119.93277 * 180.26765 * 2 1 3 26 26 C 1.50701 * 119.87053 * 0.02562 * 25 2 1 27 27 O 1.42901 * 109.47174 * 180.27252 * 26 25 2 28 28 H 1.09004 * 109.46815 * 90.00844 * 1 2 3 29 29 H 1.09002 * 109.47416 * 209.99956 * 1 2 3 30 30 H 1.08994 * 109.47767 * 330.00495 * 1 2 3 31 31 H 1.08003 * 120.06756 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.70838 * 359.97219 * 6 5 4 33 33 H 0.96999 * 119.99694 * 179.97438 * 11 10 8 34 34 H 1.07999 * 119.94510 * 179.79594 * 16 7 6 35 35 H 1.08000 * 120.19511 * 0.04749 * 18 17 16 36 36 H 1.07996 * 119.52906 * 179.97438 * 19 18 17 37 37 H 1.07993 * 119.50983 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.12654 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.06681 * 179.97438 * 23 4 3 40 40 H 1.07997 * 119.93319 * 180.02562 * 24 23 4 41 41 H 1.08997 * 109.47271 * 300.27532 * 26 25 2 42 42 H 1.09003 * 109.47243 * 60.27591 * 26 25 2 43 43 H 0.96703 * 113.99874 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1959 0.0000 4 6 3.5899 1.1943 0.0005 5 6 4.3353 2.4751 0.0000 6 6 4.0310 3.4505 -0.9077 7 6 4.7345 4.6738 -0.9101 8 6 4.3977 5.6677 -1.8551 9 1 3.9541 5.3871 -2.7990 10 6 4.6384 7.0159 -1.5685 11 7 4.8537 7.3942 -0.3346 12 14 4.6527 8.2759 -2.9476 13 1 3.2832 8.8177 -3.1373 14 1 5.5789 9.3827 -2.5973 15 1 5.1076 7.6289 -4.2044 16 6 5.7639 4.9157 0.0069 17 6 6.1087 3.9402 0.9483 18 6 7.1412 4.1603 1.8808 19 6 7.4513 3.1886 2.7833 20 6 6.7615 1.9791 2.7985 21 6 5.7553 1.7327 1.9091 22 6 5.4081 2.7063 0.9677 23 6 4.2803 -0.0175 0.0016 24 6 3.5808 -1.2067 0.0016 25 6 2.1972 -1.1987 -0.0056 26 6 1.4392 -2.5012 -0.0123 27 8 2.3641 -3.5906 -0.0108 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6557 2.1313 -0.0004 32 1 3.2432 3.2847 -1.6276 33 1 5.0209 8.3288 -0.1360 34 1 6.2931 5.8570 -0.0126 35 1 7.6836 5.0942 1.8802 36 1 8.2435 3.3586 3.4973 37 1 7.0263 1.2249 3.5246 38 1 5.2290 0.7899 1.9335 39 1 5.3603 -0.0249 0.0016 40 1 4.1143 -2.1457 0.0029 41 1 0.8083 -2.5590 0.8747 42 1 0.8164 -2.5546 -0.9052 43 1 1.9452 -4.4621 -0.0145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243192973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:19 Heat of formation + Delta-G solvation = -18.610368 kcal Electronic energy + Delta-G solvation = -25163.428890 eV Core-core repulsion = 21715.292422 eV Total energy + Delta-G solvation = -3448.136469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.07075 -40.05635 -37.66352 -37.34384 -35.50071 -34.21018 -32.96099 -31.78936 -31.30528 -29.75672 -27.95154 -27.27342 -26.40949 -23.88722 -23.28172 -22.84951 -22.24920 -21.01119 -19.22786 -18.30849 -17.84739 -17.62747 -17.01824 -16.68537 -16.22814 -15.97284 -15.82680 -15.60099 -14.95706 -14.90919 -14.42731 -14.34450 -14.20722 -14.08284 -13.86005 -13.73911 -13.40647 -13.17019 -13.11210 -12.88453 -12.73095 -12.59360 -12.52289 -12.12078 -12.01714 -11.88578 -11.63273 -11.39872 -11.21471 -11.15421 -10.93107 -10.41601 -9.67121 -9.41295 -9.26364 -8.68962 -8.36359 -6.33070 -0.17295 0.42145 0.48669 0.57111 1.33793 1.37900 1.50443 1.56304 2.16165 2.28975 2.79357 3.01405 3.36330 3.68763 3.78872 3.97147 4.03286 4.10505 4.12825 4.27956 4.31283 4.37125 4.47304 4.58578 4.60569 4.64830 4.72912 4.80112 4.85533 4.88083 4.95251 4.96100 5.08565 5.16400 5.20225 5.25891 5.34282 5.42695 5.55281 5.64097 5.66313 5.73117 5.75133 5.84295 5.97801 6.05590 6.07397 6.23706 6.42114 6.63400 6.84758 6.92827 6.99573 8.28420 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003914 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.451165 B = 7151.878015 C = 8924.219485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.039 4.039 5 C -0.043 4.043 6 C -0.152 4.152 7 C 0.078 3.922 8 C -0.487 4.487 9 H 0.080 0.920 10 C 0.034 3.966 11 N -0.816 5.816 12 Si 0.982 3.018 13 H -0.259 1.259 14 H -0.267 1.267 15 H -0.258 1.258 16 C -0.233 4.233 17 C -0.022 4.022 18 C -0.161 4.161 19 C -0.106 4.106 20 C -0.180 4.180 21 C -0.088 4.088 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.097 4.097 25 C -0.107 4.107 26 C 0.125 3.875 27 O -0.588 6.588 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.289 0.711 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -15.559 1.911 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.039 4.039 5 C -0.043 4.043 6 C -0.170 4.170 7 C 0.076 3.924 8 C -0.516 4.516 9 H 0.098 0.902 10 C -0.182 4.182 11 N -0.441 5.441 12 Si 0.802 3.198 13 H -0.184 1.184 14 H -0.191 1.191 15 H -0.182 1.182 16 C -0.253 4.253 17 C -0.022 4.022 18 C -0.180 4.180 19 C -0.123 4.123 20 C -0.198 4.198 21 C -0.105 4.105 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.115 4.115 25 C -0.108 4.108 26 C 0.048 3.952 27 O -0.398 6.398 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.273 -14.870 2.060 16.270 hybrid contribution -0.080 0.973 -0.584 1.137 sum -6.354 -13.897 1.476 15.352 Atomic orbital electron populations 1.20888 0.88598 1.03999 1.03499 1.19802 0.97614 0.91155 0.99420 1.21185 0.92696 0.98392 1.01946 1.18866 0.93422 0.91859 0.99787 1.19552 0.95634 0.93147 0.95993 1.21215 1.00811 0.94661 1.00328 1.17715 0.90008 0.91841 0.92868 1.19887 1.37218 0.91775 1.02712 0.90163 1.26780 0.91551 1.01388 0.98471 1.69912 1.33576 1.19455 1.21165 0.85204 0.79444 0.76816 0.78294 1.18377 1.19141 1.18186 1.21067 1.02281 0.99545 1.02439 1.18227 0.95136 0.93409 0.95438 1.21078 0.99169 1.00047 0.97673 1.20935 0.99818 0.93420 0.98163 1.20865 0.98893 0.98439 1.01568 1.21035 0.97256 0.97863 0.94389 1.18839 0.99629 0.95423 1.00037 1.21292 0.99883 0.91604 1.01507 1.20988 0.94331 0.97449 0.98718 1.19962 0.94014 0.94749 1.02032 1.20903 0.89733 0.82822 1.01722 1.86412 1.37339 1.18179 1.97842 0.89796 0.89197 0.91344 0.86576 0.87502 0.90056 0.88222 0.87003 0.84212 0.84200 0.85638 0.86402 0.84324 0.90323 0.90494 0.74731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.59 71.24 0.68 -1.36 16 2 C -0.08 -2.12 5.87 -19.90 -0.12 -2.24 16 3 C -0.12 -4.23 9.14 22.50 0.21 -4.03 16 4 C -0.04 -1.52 5.09 -20.05 -0.10 -1.62 16 5 C -0.04 -2.00 5.59 -18.90 -0.11 -2.10 16 6 C -0.15 -7.62 9.11 22.61 0.21 -7.42 16 7 C 0.08 4.33 5.54 -21.42 -0.12 4.21 16 8 C -0.49 -26.49 8.99 23.41 0.21 -26.28 16 9 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 10 C 0.03 1.72 5.10 85.25 0.44 2.16 16 11 N -0.82 -43.59 11.00 21.82 0.24 -43.35 16 12 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 13 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 14 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 16 C -0.23 -13.01 8.38 23.09 0.19 -12.81 16 17 C -0.02 -1.11 5.74 -21.33 -0.12 -1.24 16 18 C -0.16 -7.11 9.78 22.43 0.22 -6.89 16 19 C -0.11 -3.86 9.95 22.04 0.22 -3.64 16 20 C -0.18 -6.36 9.96 22.12 0.22 -6.14 16 21 C -0.09 -3.50 8.68 22.25 0.19 -3.31 16 22 C -0.14 -6.55 5.88 -19.89 -0.12 -6.67 16 23 C -0.12 -4.28 7.68 22.50 0.17 -4.10 16 24 C -0.10 -2.82 9.36 22.24 0.21 -2.61 16 25 C -0.11 -2.72 5.88 -19.81 -0.12 -2.84 16 26 C 0.13 2.03 6.16 71.24 0.44 2.47 16 27 O -0.59 -9.66 12.12 -148.98 -1.81 -11.47 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.09 1.14 6.63 -2.39 -0.02 1.12 16 30 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.12 4.04 8.04 -2.91 -0.02 4.02 16 32 H 0.11 5.04 8.01 -2.91 -0.02 5.02 16 33 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 34 H 0.10 5.83 6.19 -2.91 -0.02 5.81 16 35 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 38 H 0.13 4.54 5.70 -2.91 -0.02 4.53 16 39 H 0.12 4.06 7.31 -2.91 -0.02 4.04 16 40 H 0.14 3.70 6.99 -2.91 -0.02 3.68 16 41 H 0.08 0.96 7.47 -2.39 -0.02 0.95 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.40 2.29 9.12 -74.06 -0.68 1.61 16 Total: -1.00 -67.84 355.70 3.64 -64.20 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.37 Total: 36.66 kcal Atomic # 6 Polarization: -89.25 SS G_CDS: 2.81 Total: -86.45 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.24 Total: -43.35 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.81 Total: -11.47 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -67.84 3.64 -64.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243192973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.593 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds