Wall clock time and date at job start Tue Mar 31 2020 13:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37864 * 119.96417 * 2 1 4 4 C 1.39490 * 119.92252 * 180.02562 * 3 2 1 5 5 C 1.48134 * 120.07405 * 180.02562 * 4 3 2 6 6 C 1.36706 * 120.34460 * 310.00359 * 5 4 3 7 7 C 1.41106 * 120.59204 * 179.72000 * 6 5 4 8 8 C 1.41217 * 119.48978 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99582 * 25.64923 * 8 7 6 10 10 C 1.39918 * 119.99963 * 205.64554 * 8 7 6 11 11 N 1.30835 * 120.00046 * 18.21483 * 10 8 7 12 12 Si 1.86797 * 119.99492 * 198.21355 * 10 8 7 13 13 H 1.48500 * 109.47165 * 90.00346 * 12 10 8 14 14 H 1.48508 * 109.46819 * 209.99922 * 12 10 8 15 15 H 1.48501 * 109.47581 * 329.99774 * 12 10 8 16 16 C 1.39971 * 121.01962 * 0.02562 * 7 6 5 17 17 C 1.39899 * 120.11613 * 359.97438 * 16 7 6 18 18 C 1.40857 * 121.13302 * 180.02562 * 17 16 7 19 19 C 1.36196 * 119.60403 * 179.97438 * 18 17 16 20 20 C 1.39248 * 120.93989 * 0.02562 * 19 18 17 21 21 C 1.36547 * 120.97737 * 359.97438 * 20 19 18 22 22 C 1.39794 * 119.74089 * 359.97438 * 21 20 19 23 23 C 1.39494 * 119.85245 * 0.28177 * 4 3 2 24 24 C 1.37867 * 119.92041 * 359.43675 * 23 4 3 25 25 C 1.50707 * 119.96272 * 180.27652 * 24 23 4 26 26 C 1.38864 * 120.07682 * 0.56554 * 24 23 4 27 27 O 1.35861 * 119.92347 * 179.69451 * 26 24 23 28 28 H 1.09007 * 109.47099 * 90.00133 * 1 2 3 29 29 H 1.09000 * 109.47405 * 209.99761 * 1 2 3 30 30 H 1.08999 * 109.47065 * 329.99826 * 1 2 3 31 31 H 1.07999 * 120.03414 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.70268 * 359.69997 * 6 5 4 33 33 H 0.97003 * 119.99772 * 180.02562 * 11 10 8 34 34 H 1.07996 * 119.94532 * 180.02562 * 16 7 6 35 35 H 1.08000 * 120.19664 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.53190 * 179.97438 * 19 18 17 37 37 H 1.07991 * 119.50983 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.12641 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.04098 * 179.70330 * 23 4 3 40 40 H 1.08997 * 109.47067 * 270.28723 * 25 24 23 41 41 H 1.09003 * 109.46465 * 30.28209 * 25 24 23 42 42 H 1.08994 * 109.46718 * 150.28055 * 25 24 23 43 43 H 0.96694 * 113.99949 * 270.01396 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1944 0.0000 4 6 3.5904 1.1934 -0.0005 5 6 4.3337 2.4747 0.0000 6 6 4.0239 3.4533 -0.9029 7 6 4.7245 4.6781 -0.9032 8 6 4.3848 5.6731 -1.8460 9 1 3.3898 5.7028 -2.2648 10 6 5.3373 6.6203 -2.2375 11 7 6.6089 6.3947 -2.0274 12 14 4.7935 8.2067 -3.0601 13 1 4.5516 9.2435 -2.0248 14 1 5.8552 8.6722 -3.9882 15 1 3.5414 7.9657 -3.8213 16 6 5.7510 4.9221 0.0165 17 6 6.0980 3.9458 0.9566 18 6 7.1270 4.1689 1.8922 19 6 7.4387 3.1970 2.7940 20 6 6.7547 1.9841 2.8045 21 6 5.7520 1.7349 1.9117 22 6 5.4028 2.7088 0.9715 23 6 4.2839 -0.0170 -0.0070 24 6 3.5890 -1.2077 -0.0011 25 6 4.3373 -2.5159 -0.0018 26 6 2.2004 -1.2031 -0.0006 27 8 1.5188 -2.3784 -0.0011 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6555 2.1297 0.0004 32 1 3.2360 3.2873 -1.6227 33 1 7.2692 7.0516 -2.2985 34 1 6.2756 5.8660 0.0010 35 1 7.6655 5.1050 1.8945 36 1 8.2282 3.3690 3.5106 37 1 7.0212 1.2294 3.5294 38 1 5.2308 0.7892 1.9319 39 1 5.3639 -0.0213 -0.0123 40 1 4.5173 -2.8309 -1.0296 41 1 5.2905 -2.3894 0.5116 42 1 3.7455 -3.2732 0.5121 43 1 1.3213 -2.7181 -0.8846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243309799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:13 Heat of formation + Delta-G solvation = -2.733403 kcal Electronic energy + Delta-G solvation = -25391.570399 eV Core-core repulsion = 21944.122407 eV Total energy + Delta-G solvation = -3447.447992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.00139 -38.77091 -36.63039 -35.67431 -33.59244 -33.49296 -31.96061 -30.01938 -29.56407 -28.05436 -26.69359 -26.38519 -25.28433 -22.71860 -21.69899 -21.36880 -20.58240 -19.65128 -18.19821 -17.46637 -16.21827 -16.06891 -15.73718 -15.42925 -14.99892 -14.62444 -14.11468 -13.83461 -13.31266 -13.23729 -13.16447 -12.98004 -12.79600 -12.56966 -12.52631 -12.37699 -12.10917 -11.95351 -11.78331 -11.67616 -11.42838 -11.22481 -11.11682 -10.90980 -10.78561 -10.46806 -10.24348 -10.06203 -9.68339 -9.57476 -9.19098 -8.73259 -8.39372 -8.09734 -7.52750 -6.91117 -6.68660 -4.43384 1.23119 1.55244 1.83856 2.27123 2.93762 3.00909 3.02733 3.19834 3.81696 3.83984 4.01822 4.36866 4.76392 4.88601 4.99170 5.07687 5.47084 5.52508 5.55406 5.63159 5.65695 5.68721 5.71828 5.73898 5.76705 5.86586 5.92098 5.94945 6.18728 6.19681 6.36424 6.37029 6.53871 6.60639 6.64506 6.68614 6.80651 6.88493 6.96740 7.01938 7.08025 7.25809 7.37465 7.42807 7.50630 7.66135 7.74621 7.86358 8.03584 8.11980 8.47277 8.69090 8.75772 10.03140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.004178 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.499349 B = 6699.400368 C = 8390.929543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.104 4.104 4 C -0.012 4.012 5 C -0.056 4.056 6 C -0.123 4.123 7 C 0.099 3.901 8 C -0.449 4.449 9 H 0.080 0.920 10 C 0.074 3.926 11 N -0.778 5.778 12 Si 0.909 3.091 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.261 1.261 16 C -0.203 4.203 17 C 0.001 3.999 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.190 4.190 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.103 4.103 24 C -0.108 4.108 25 C -0.109 4.109 26 C 0.083 3.917 27 O -0.495 6.495 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.283 0.717 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -10.193 1.624 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.122 4.122 4 C -0.012 4.012 5 C -0.056 4.056 6 C -0.142 4.142 7 C 0.097 3.903 8 C -0.478 4.478 9 H 0.099 0.901 10 C -0.146 4.146 11 N -0.402 5.402 12 Si 0.733 3.267 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.185 1.185 16 C -0.223 4.223 17 C 0.000 4.000 18 C -0.155 4.155 19 C -0.137 4.137 20 C -0.208 4.208 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.166 4.166 26 C 0.039 3.961 27 O -0.304 6.304 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.128 -10.036 2.167 11.476 hybrid contribution -0.027 0.750 -0.958 1.217 sum -5.154 -9.286 1.209 10.689 Atomic orbital electron populations 1.20653 0.91004 1.02897 1.01993 1.20040 0.96343 0.92374 1.01981 1.21070 0.93194 0.97197 1.00767 1.18925 0.92548 0.92874 0.96848 1.19164 0.96655 0.92289 0.97522 1.21153 1.01255 0.93354 0.98427 1.17387 0.91252 0.90379 0.91300 1.19650 0.98522 1.09354 1.20252 0.90148 1.25917 0.94300 0.99460 0.94874 1.69838 1.01416 1.33733 1.35176 0.86295 0.79613 0.81347 0.79468 1.19100 1.20179 1.18518 1.21192 1.04689 0.99194 0.97229 1.17926 0.93873 0.93254 0.94909 1.20910 0.98697 0.98917 0.97022 1.20498 0.99778 0.94354 0.99069 1.20352 1.00603 0.97836 1.02022 1.20791 0.96704 0.97796 0.94847 1.18459 0.98960 0.95340 0.98981 1.21118 1.00012 0.90528 1.00475 1.20056 0.92873 0.95864 1.02044 1.20656 0.99745 0.94174 1.02001 1.18046 0.89049 0.84591 1.04402 1.84754 1.76252 1.36525 1.32879 0.91594 0.91201 0.91548 0.85532 0.87927 0.90565 0.86054 0.87311 0.88136 0.88232 0.87410 0.85435 0.91611 0.91543 0.91177 0.76475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.78 36.00 0.35 -0.88 16 2 C -0.11 -1.54 5.89 -104.53 -0.62 -2.15 16 3 C -0.10 -1.71 9.13 -39.25 -0.36 -2.07 16 4 C -0.01 -0.22 5.08 -104.90 -0.53 -0.75 16 5 C -0.06 -1.20 5.59 -103.13 -0.58 -1.78 16 6 C -0.12 -2.81 9.10 -39.05 -0.36 -3.16 16 7 C 0.10 2.51 5.55 -107.03 -0.59 1.91 16 8 C -0.45 -11.20 8.99 -37.82 -0.34 -11.54 16 9 H 0.08 1.90 7.91 -52.49 -0.42 1.49 16 10 C 0.07 1.77 5.09 -17.35 -0.09 1.68 16 11 N -0.78 -19.32 11.00 55.55 0.61 -18.71 16 12 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 16 C -0.20 -5.15 8.39 -38.31 -0.32 -5.48 16 17 C 0.00 0.02 5.74 -106.88 -0.61 -0.60 16 18 C -0.14 -2.92 9.78 -39.33 -0.38 -3.30 16 19 C -0.12 -2.26 9.95 -39.94 -0.40 -2.66 16 20 C -0.19 -3.55 9.96 -39.82 -0.40 -3.95 16 21 C -0.08 -1.66 8.70 -39.61 -0.34 -2.01 16 22 C -0.12 -2.61 5.88 -104.65 -0.62 -3.23 16 23 C -0.10 -1.71 7.32 -39.25 -0.29 -2.00 16 24 C -0.11 -1.56 5.89 -104.52 -0.62 -2.17 16 25 C -0.11 -1.25 9.78 36.01 0.35 -0.90 16 26 C 0.08 1.17 6.65 -39.12 -0.26 0.91 16 27 O -0.50 -5.73 11.56 -19.30 -0.22 -5.95 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 30 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.13 2.00 8.03 -52.49 -0.42 1.58 16 32 H 0.10 2.16 8.01 -52.49 -0.42 1.74 16 33 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 34 H 0.12 3.20 6.15 -52.49 -0.32 2.87 16 35 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.97 5.71 -52.49 -0.30 1.67 16 39 H 0.13 2.12 7.34 -52.48 -0.39 1.73 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 43 H 0.38 2.73 9.06 45.56 0.41 3.14 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -27.80 357.90 -10.96 -38.76 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.72 Total: 11.88 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: -6.99 Total: -44.13 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.61 Total: -18.71 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.22 Total: -5.95 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.80 -10.96 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243309799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.028 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds