Wall clock time and date at job start Tue Mar 31 2020 13:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37864 * 119.96417 * 2 1 4 4 C 1.39490 * 119.92252 * 180.02562 * 3 2 1 5 5 C 1.48134 * 120.07405 * 180.02562 * 4 3 2 6 6 C 1.36706 * 120.34460 * 310.00359 * 5 4 3 7 7 C 1.41106 * 120.59204 * 179.72000 * 6 5 4 8 8 C 1.41217 * 119.48978 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99582 * 25.64923 * 8 7 6 10 10 C 1.39918 * 119.99963 * 205.64554 * 8 7 6 11 11 N 1.30835 * 120.00046 * 18.21483 * 10 8 7 12 12 Si 1.86797 * 119.99492 * 198.21355 * 10 8 7 13 13 H 1.48500 * 109.47165 * 90.00346 * 12 10 8 14 14 H 1.48508 * 109.46819 * 209.99922 * 12 10 8 15 15 H 1.48501 * 109.47581 * 329.99774 * 12 10 8 16 16 C 1.39971 * 121.01962 * 0.02562 * 7 6 5 17 17 C 1.39899 * 120.11613 * 359.97438 * 16 7 6 18 18 C 1.40857 * 121.13302 * 180.02562 * 17 16 7 19 19 C 1.36196 * 119.60403 * 179.97438 * 18 17 16 20 20 C 1.39248 * 120.93989 * 0.02562 * 19 18 17 21 21 C 1.36547 * 120.97737 * 359.97438 * 20 19 18 22 22 C 1.39794 * 119.74089 * 359.97438 * 21 20 19 23 23 C 1.39494 * 119.85245 * 0.28177 * 4 3 2 24 24 C 1.37867 * 119.92041 * 359.43675 * 23 4 3 25 25 C 1.50707 * 119.96272 * 180.27652 * 24 23 4 26 26 C 1.38864 * 120.07682 * 0.56554 * 24 23 4 27 27 O 1.35861 * 119.92347 * 179.69451 * 26 24 23 28 28 H 1.09007 * 109.47099 * 90.00133 * 1 2 3 29 29 H 1.09000 * 109.47405 * 209.99761 * 1 2 3 30 30 H 1.08999 * 109.47065 * 329.99826 * 1 2 3 31 31 H 1.07999 * 120.03414 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.70268 * 359.69997 * 6 5 4 33 33 H 0.97003 * 119.99772 * 180.02562 * 11 10 8 34 34 H 1.07996 * 119.94532 * 180.02562 * 16 7 6 35 35 H 1.08000 * 120.19664 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.53190 * 179.97438 * 19 18 17 37 37 H 1.07991 * 119.50983 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.12641 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.04098 * 179.70330 * 23 4 3 40 40 H 1.08997 * 109.47067 * 270.28723 * 25 24 23 41 41 H 1.09003 * 109.46465 * 30.28209 * 25 24 23 42 42 H 1.08994 * 109.46718 * 150.28055 * 25 24 23 43 43 H 0.96694 * 113.99949 * 270.01396 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1944 0.0000 4 6 3.5904 1.1934 -0.0005 5 6 4.3337 2.4747 0.0000 6 6 4.0239 3.4533 -0.9029 7 6 4.7245 4.6781 -0.9032 8 6 4.3848 5.6731 -1.8460 9 1 3.3898 5.7028 -2.2648 10 6 5.3373 6.6203 -2.2375 11 7 6.6089 6.3947 -2.0274 12 14 4.7935 8.2067 -3.0601 13 1 4.5516 9.2435 -2.0248 14 1 5.8552 8.6722 -3.9882 15 1 3.5414 7.9657 -3.8213 16 6 5.7510 4.9221 0.0165 17 6 6.0980 3.9458 0.9566 18 6 7.1270 4.1689 1.8922 19 6 7.4387 3.1970 2.7940 20 6 6.7547 1.9841 2.8045 21 6 5.7520 1.7349 1.9117 22 6 5.4028 2.7088 0.9715 23 6 4.2839 -0.0170 -0.0070 24 6 3.5890 -1.2077 -0.0011 25 6 4.3373 -2.5159 -0.0018 26 6 2.2004 -1.2031 -0.0006 27 8 1.5188 -2.3784 -0.0011 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6555 2.1297 0.0004 32 1 3.2360 3.2873 -1.6227 33 1 7.2692 7.0516 -2.2985 34 1 6.2756 5.8660 0.0010 35 1 7.6655 5.1050 1.8945 36 1 8.2282 3.3690 3.5106 37 1 7.0212 1.2294 3.5294 38 1 5.2308 0.7892 1.9319 39 1 5.3639 -0.0213 -0.0123 40 1 4.5173 -2.8309 -1.0296 41 1 5.2905 -2.3894 0.5116 42 1 3.7455 -3.2732 0.5121 43 1 1.3213 -2.7181 -0.8846 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243309799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:11 Heat of formation + Delta-G solvation = -14.952906 kcal Electronic energy + Delta-G solvation = -25392.100276 eV Core-core repulsion = 21944.122407 eV Total energy + Delta-G solvation = -3447.977869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25296 -40.29597 -37.82222 -37.32084 -35.22366 -34.56260 -33.50885 -31.50737 -31.19330 -29.53621 -27.82299 -27.52195 -27.02373 -24.26393 -23.24633 -22.95849 -21.75973 -21.19434 -19.35956 -19.04753 -17.83442 -17.66245 -17.00845 -16.64365 -16.54687 -16.16498 -15.62349 -14.99285 -14.86844 -14.54900 -14.27367 -14.20297 -14.09564 -14.02013 -13.86128 -13.68848 -13.64821 -13.27202 -12.99855 -12.91838 -12.80150 -12.72033 -12.52301 -12.40514 -12.34644 -12.02641 -11.70374 -11.36955 -11.33123 -11.21430 -10.92263 -10.40134 -9.55436 -9.38863 -9.26223 -8.68900 -8.36474 -6.32081 -0.19838 0.36287 0.38250 0.57772 1.34579 1.38691 1.49798 1.55215 2.16550 2.28269 2.64741 3.01987 3.34388 3.71442 3.73737 3.86493 3.92449 4.09581 4.27093 4.31333 4.33967 4.44806 4.58948 4.64233 4.67610 4.74010 4.80258 4.81163 4.88149 4.88780 4.92232 4.96592 5.12928 5.16931 5.22950 5.27563 5.36759 5.41252 5.51439 5.56357 5.63053 5.71624 5.74094 5.84789 5.91649 5.97840 6.06312 6.23614 6.42853 6.64039 6.85198 6.89633 6.93808 8.27935 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.004178 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.499349 B = 6699.400368 C = 8390.929543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.041 4.041 5 C -0.042 4.042 6 C -0.150 4.150 7 C 0.077 3.923 8 C -0.486 4.486 9 H 0.081 0.919 10 C 0.034 3.966 11 N -0.815 5.815 12 Si 0.982 3.018 13 H -0.264 1.264 14 H -0.268 1.268 15 H -0.255 1.255 16 C -0.235 4.235 17 C -0.022 4.022 18 C -0.162 4.162 19 C -0.106 4.106 20 C -0.180 4.180 21 C -0.087 4.087 22 C -0.138 4.138 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.106 4.106 26 C 0.096 3.904 27 O -0.493 6.493 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.289 0.711 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 -12.957 2.606 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.132 4.132 4 C -0.041 4.041 5 C -0.042 4.042 6 C -0.168 4.168 7 C 0.075 3.925 8 C -0.514 4.514 9 H 0.099 0.901 10 C -0.182 4.182 11 N -0.440 5.440 12 Si 0.802 3.198 13 H -0.188 1.188 14 H -0.192 1.192 15 H -0.178 1.178 16 C -0.255 4.255 17 C -0.022 4.022 18 C -0.180 4.180 19 C -0.124 4.124 20 C -0.198 4.198 21 C -0.105 4.105 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.163 4.163 26 C 0.051 3.949 27 O -0.305 6.305 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -5.896 -12.830 3.144 14.466 hybrid contribution 0.201 1.312 -1.103 1.725 sum -5.696 -11.518 2.042 13.010 Atomic orbital electron populations 1.20700 0.88732 1.03520 1.03274 1.20333 0.97988 0.91712 1.00848 1.21092 0.92563 0.98140 1.01369 1.18833 0.93267 0.91928 1.00064 1.19500 0.95695 0.93204 0.95833 1.21206 1.02215 0.93517 0.99905 1.17717 0.91758 0.91520 0.91530 1.19902 0.99061 1.10983 1.21477 0.90050 1.26772 0.93993 1.02277 0.95127 1.69915 1.02541 1.35020 1.36479 0.85207 0.79399 0.76741 0.78440 1.18835 1.19235 1.17821 1.21083 1.05963 0.99298 0.99154 1.18226 0.95012 0.93666 0.95301 1.21073 0.98885 1.00224 0.97806 1.20932 0.99768 0.93443 0.98222 1.20859 0.99012 0.98335 1.01588 1.21017 0.97243 0.97840 0.94364 1.18828 0.99423 0.95572 1.00039 1.21068 0.99792 0.90734 1.01199 1.20341 0.93396 0.96273 1.00843 1.20707 0.99686 0.92600 1.03257 1.18100 0.89042 0.85278 1.02456 1.84694 1.75702 1.35189 1.34942 0.89896 0.90160 0.91333 0.86022 0.87365 0.90056 0.88253 0.87100 0.84312 0.84239 0.85627 0.86014 0.90006 0.91142 0.90119 0.73644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.78 71.24 0.70 -1.43 16 2 C -0.11 -2.90 5.89 -19.80 -0.12 -3.02 16 3 C -0.11 -3.72 9.13 22.48 0.21 -3.51 16 4 C -0.04 -1.51 5.08 -20.04 -0.10 -1.61 16 5 C -0.04 -1.89 5.59 -18.90 -0.11 -1.99 16 6 C -0.15 -7.32 9.10 22.62 0.21 -7.12 16 7 C 0.08 4.20 5.55 -21.42 -0.12 4.08 16 8 C -0.49 -25.95 8.99 23.41 0.21 -25.74 16 9 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 10 C 0.03 1.73 5.09 85.25 0.43 2.16 16 11 N -0.81 -43.08 11.00 21.82 0.24 -42.84 16 12 Si 0.98 37.94 29.60 68.60 2.03 39.97 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 16 C -0.23 -12.90 8.39 23.09 0.19 -12.70 16 17 C -0.02 -1.09 5.74 -21.33 -0.12 -1.21 16 18 C -0.16 -7.01 9.78 22.43 0.22 -6.79 16 19 C -0.11 -3.80 9.95 22.04 0.22 -3.58 16 20 C -0.18 -6.21 9.96 22.12 0.22 -5.99 16 21 C -0.09 -3.36 8.70 22.25 0.19 -3.17 16 22 C -0.14 -6.35 5.88 -19.89 -0.12 -6.47 16 23 C -0.11 -3.54 7.32 22.48 0.16 -3.38 16 24 C -0.11 -2.85 5.89 -19.80 -0.12 -2.97 16 25 C -0.11 -2.07 9.78 71.24 0.70 -1.38 16 26 C 0.10 2.40 6.65 22.57 0.15 2.55 16 27 O -0.49 -9.36 11.56 -91.99 -1.06 -10.43 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.46 7.52 -2.39 -0.02 1.44 16 30 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.12 3.98 8.03 -2.91 -0.02 3.96 16 32 H 0.11 4.94 8.01 -2.91 -0.02 4.91 16 33 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 34 H 0.10 5.74 6.15 -2.91 -0.02 5.72 16 35 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.14 3.75 8.06 -2.92 -0.02 3.73 16 38 H 0.13 4.38 5.71 -2.91 -0.02 4.36 16 39 H 0.12 3.98 7.34 -2.91 -0.02 3.96 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.33 8.09 -2.39 -0.02 1.32 16 42 H 0.08 1.43 7.52 -2.39 -0.02 1.41 16 43 H 0.41 3.95 9.06 -74.06 -0.67 3.28 16 Total: -1.00 -64.55 357.90 4.59 -59.96 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.37 Total: 36.59 kcal Atomic # 6 Polarization: -86.27 SS G_CDS: 3.01 Total: -83.26 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.24 Total: -42.84 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.06 Total: -10.43 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -64.55 4.59 -59.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243309799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.005 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds