Wall clock time and date at job start Tue Mar 31 2020 12:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38363 * 119.93560 * 2 1 4 4 C 1.38316 * 120.26397 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.93146 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47309 * 270.02511 * 5 4 3 7 7 C 1.38006 * 120.13381 * 0.02615 * 4 3 2 8 8 C 1.39421 * 119.86527 * 359.97438 * 7 4 3 9 9 C 1.48178 * 120.12964 * 179.97438 * 8 7 4 10 10 C 1.36675 * 120.34442 * 310.01848 * 9 8 7 11 11 C 1.41128 * 120.59213 * 179.97438 * 10 9 8 12 12 C 1.41212 * 119.49115 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99811 * 25.64177 * 12 11 10 14 14 C 1.39920 * 120.00201 * 205.64459 * 12 11 10 15 15 N 1.30838 * 120.00285 * 18.20407 * 14 12 11 16 16 Si 1.86804 * 120.00450 * 198.20636 * 14 12 11 17 17 H 1.48489 * 109.47258 * 89.99606 * 16 14 12 18 18 H 1.48498 * 109.47236 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46752 * 329.99500 * 16 14 12 20 20 C 1.39962 * 121.01739 * 359.97438 * 11 10 9 21 21 C 1.39883 * 120.11521 * 0.03955 * 20 11 10 22 22 C 1.40858 * 121.14775 * 179.97438 * 21 20 11 23 23 C 1.36190 * 119.61086 * 179.97438 * 22 21 20 24 24 C 1.39249 * 120.94189 * 0.02562 * 23 22 21 25 25 C 1.36539 * 120.97744 * 0.23993 * 24 23 22 26 26 C 1.39809 * 119.73565 * 359.48741 * 25 24 23 27 27 C 1.37966 * 119.93060 * 180.25329 * 2 1 3 28 28 H 1.08999 * 109.46755 * 90.00200 * 1 2 3 29 29 H 1.09002 * 109.46999 * 210.00082 * 1 2 3 30 30 H 1.08992 * 109.47057 * 330.00306 * 1 2 3 31 31 H 1.08002 * 119.86390 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.46972 * 30.02576 * 5 4 3 33 33 H 1.08997 * 109.47488 * 150.02467 * 5 4 3 34 34 H 0.96701 * 113.99734 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.06675 * 179.97438 * 7 4 3 36 36 H 1.08004 * 119.70081 * 359.96038 * 10 9 8 37 37 H 0.97002 * 120.00454 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.94229 * 180.02562 * 20 11 10 39 39 H 1.08003 * 120.19042 * 0.02562 * 22 21 20 40 40 H 1.07998 * 119.52448 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.50535 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.12479 * 179.73438 * 25 24 23 43 43 H 1.08002 * 120.07209 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1990 0.0000 4 6 3.5807 1.2070 0.0005 5 6 4.3251 2.5172 -0.0001 6 8 4.5604 2.9308 -1.3475 7 6 4.2803 0.0174 0.0005 8 6 3.5901 -1.1940 0.0005 9 6 4.3354 -2.4747 -0.0001 10 6 5.3379 -2.6897 -0.9038 11 6 6.0515 -3.9073 -0.9087 12 6 7.0833 -4.1046 -1.8524 13 1 7.6043 -3.2549 -2.2684 14 6 7.4306 -5.4008 -2.2487 15 7 6.6022 -6.3922 -2.0418 16 14 9.0770 -5.7161 -3.0730 17 1 10.0969 -6.0260 -2.0393 18 1 8.9518 -6.8652 -4.0052 19 1 9.4908 -4.5075 -3.8302 20 6 5.7531 -4.9219 0.0081 21 6 4.7338 -4.7402 0.9488 22 6 4.4149 -5.7469 1.8810 23 6 3.4168 -5.5365 2.7834 24 6 2.7053 -4.3396 2.7981 25 6 2.9847 -3.3450 1.9053 26 6 4.0064 -3.5219 0.9674 27 6 2.1954 -1.1956 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6543 2.1325 0.0004 32 1 3.7307 3.2730 0.5135 33 1 5.2784 2.3938 0.5138 34 1 5.0363 3.7691 -1.4242 35 1 5.3603 0.0249 0.0005 36 1 5.5860 -1.9211 -1.6208 37 1 6.8428 -7.2908 -2.3168 38 1 6.3105 -5.8467 -0.0109 39 1 4.9593 -6.6797 1.8807 40 1 3.1732 -6.3094 3.4973 41 1 1.9181 -4.1976 3.5237 42 1 2.4213 -2.4238 1.9263 43 1 1.6555 -2.1310 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243704826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:30 Heat of formation + Delta-G solvation = -5.244790 kcal Electronic energy + Delta-G solvation = -25232.638040 eV Core-core repulsion = 21785.081147 eV Total energy + Delta-G solvation = -3447.556894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.65875 -38.51116 -36.68041 -35.72590 -33.88861 -32.65781 -32.15037 -30.06007 -29.52872 -27.97586 -26.74523 -25.86204 -25.27508 -22.79958 -21.69155 -21.31813 -20.34435 -19.57746 -17.51025 -17.46324 -16.26652 -16.01728 -15.91024 -15.48997 -15.01274 -14.66487 -14.28755 -13.86550 -13.68178 -13.61549 -13.19825 -12.98956 -12.65954 -12.51911 -12.37570 -12.19363 -12.12234 -11.97840 -11.63376 -11.52516 -11.31045 -10.99325 -10.90254 -10.86080 -10.69584 -10.46113 -10.14024 -10.06414 -9.65725 -9.55063 -9.18743 -8.76295 -8.43737 -8.23089 -7.50966 -6.89192 -6.67756 -4.41256 1.34558 1.56247 1.90866 2.28801 2.95511 3.02385 3.04649 3.23232 3.83705 3.89802 4.04598 4.48856 4.78022 4.88212 5.01365 5.06211 5.26195 5.28309 5.46158 5.52254 5.58018 5.67544 5.72409 5.74438 5.75345 5.78196 5.92440 5.92977 6.19253 6.28043 6.34828 6.39229 6.59939 6.66403 6.72063 6.77185 6.83843 6.92381 6.99595 7.05092 7.22574 7.29949 7.39221 7.45206 7.52990 7.54401 7.68407 7.88713 8.05732 8.13641 8.49467 8.71361 8.77820 10.05063 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010428 B = 0.004464 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.444048 B = 6270.613704 C = 8334.477364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.094 4.094 5 C 0.120 3.880 6 O -0.566 6.566 7 C -0.096 4.096 8 C -0.012 4.012 9 C -0.056 4.056 10 C -0.123 4.123 11 C 0.100 3.900 12 C -0.449 4.449 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.778 5.778 16 Si 0.909 3.091 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.204 4.204 21 C 0.001 3.999 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.191 4.191 25 C -0.083 4.083 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.376 0.624 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.283 0.717 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 11.026 4.193 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.094 4.094 5 C 0.043 3.957 6 O -0.371 6.371 7 C -0.114 4.114 8 C -0.012 4.012 9 C -0.057 4.057 10 C -0.141 4.141 11 C 0.097 3.903 12 C -0.477 4.477 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.402 5.402 16 Si 0.733 3.267 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.224 4.224 21 C 0.001 3.999 22 C -0.156 4.156 23 C -0.137 4.137 24 C -0.209 4.209 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.122 4.122 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.906 10.212 3.997 12.456 hybrid contribution 1.002 0.164 -0.304 1.060 sum -4.904 10.376 3.694 12.056 Atomic orbital electron populations 1.20751 0.91361 1.02451 1.02154 1.19767 0.95836 0.92920 1.00814 1.20780 0.93218 0.97226 1.01833 1.19410 0.93570 0.93751 1.02674 1.20958 0.98038 0.93102 0.83610 1.86615 1.80244 1.43743 1.26537 1.21140 0.99826 0.90868 0.99537 1.18893 0.92749 0.92609 0.96950 1.19173 0.97453 0.91504 0.97521 1.21179 0.95893 0.98700 0.98363 1.17394 0.91206 0.90384 0.91294 1.19662 1.14914 0.92954 1.20160 0.90123 1.25922 0.97954 0.95797 0.94885 1.69839 1.33609 1.01555 1.35153 0.86289 0.81970 0.78985 0.79455 1.19109 1.20174 1.18494 1.21179 1.01720 1.02226 0.97302 1.17919 0.95192 0.91911 0.94901 1.20906 0.99075 0.98528 0.97059 1.20490 0.97202 0.96954 0.99082 1.20341 1.03082 0.95449 1.02036 1.20787 0.96522 0.97966 0.94840 1.18461 1.00066 0.94174 0.99085 1.21258 0.93464 0.97542 0.99913 0.91382 0.91548 0.91877 0.86632 0.93096 0.92788 0.77737 0.85921 0.87888 0.90572 0.86060 0.87333 0.88165 0.88264 0.87411 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.09 -1.35 5.87 -104.67 -0.61 -1.96 16 3 C -0.11 -1.58 9.35 -39.51 -0.37 -1.95 16 4 C -0.09 -1.40 5.50 -104.68 -0.58 -1.98 16 5 C 0.12 1.40 7.17 36.00 0.26 1.66 16 6 O -0.57 -6.90 13.64 -35.23 -0.48 -7.38 16 7 C -0.10 -1.64 9.13 -39.23 -0.36 -2.00 16 8 C -0.01 -0.23 5.08 -104.92 -0.53 -0.76 16 9 C -0.06 -1.24 5.59 -103.13 -0.58 -1.81 16 10 C -0.12 -2.88 9.10 -39.05 -0.36 -3.24 16 11 C 0.10 2.56 5.55 -107.03 -0.59 1.97 16 12 C -0.45 -11.39 8.99 -37.82 -0.34 -11.73 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 14 C 0.07 1.79 5.09 -17.35 -0.09 1.70 16 15 N -0.78 -19.56 11.00 55.55 0.61 -18.95 16 16 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 C -0.20 -5.25 8.39 -38.32 -0.32 -5.57 16 21 C 0.00 0.03 5.74 -106.88 -0.61 -0.59 16 22 C -0.14 -2.94 9.78 -39.33 -0.38 -3.32 16 23 C -0.12 -2.27 9.95 -39.94 -0.40 -2.67 16 24 C -0.19 -3.57 9.96 -39.82 -0.40 -3.96 16 25 C -0.08 -1.66 8.69 -39.61 -0.34 -2.00 16 26 C -0.12 -2.65 5.88 -104.65 -0.62 -3.27 16 27 C -0.10 -1.76 7.33 -39.22 -0.29 -2.05 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.38 2.52 9.12 45.56 0.42 2.94 16 35 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 36 H 0.10 2.29 8.01 -52.48 -0.42 1.87 16 37 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 38 H 0.12 3.23 6.15 -52.49 -0.32 2.90 16 39 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.95 5.70 -52.48 -0.30 1.66 16 43 H 0.13 2.12 7.32 -52.49 -0.38 1.73 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -29.06 360.97 -11.39 -40.45 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.78 Total: 11.81 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: -7.15 Total: -44.38 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.61 Total: -18.95 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.48 Total: -7.38 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.06 -11.39 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243704826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.205 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds