Wall clock time and date at job start Tue Mar 31 2020 12:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38363 * 119.93560 * 2 1 4 4 C 1.38316 * 120.26397 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.93146 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47309 * 270.02511 * 5 4 3 7 7 C 1.38006 * 120.13381 * 0.02615 * 4 3 2 8 8 C 1.39421 * 119.86527 * 359.97438 * 7 4 3 9 9 C 1.48178 * 120.12964 * 179.97438 * 8 7 4 10 10 C 1.36675 * 120.34442 * 310.01848 * 9 8 7 11 11 C 1.41128 * 120.59213 * 179.97438 * 10 9 8 12 12 C 1.41212 * 119.49115 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99811 * 25.64177 * 12 11 10 14 14 C 1.39920 * 120.00201 * 205.64459 * 12 11 10 15 15 N 1.30838 * 120.00285 * 18.20407 * 14 12 11 16 16 Si 1.86804 * 120.00450 * 198.20636 * 14 12 11 17 17 H 1.48489 * 109.47258 * 89.99606 * 16 14 12 18 18 H 1.48498 * 109.47236 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46752 * 329.99500 * 16 14 12 20 20 C 1.39962 * 121.01739 * 359.97438 * 11 10 9 21 21 C 1.39883 * 120.11521 * 0.03955 * 20 11 10 22 22 C 1.40858 * 121.14775 * 179.97438 * 21 20 11 23 23 C 1.36190 * 119.61086 * 179.97438 * 22 21 20 24 24 C 1.39249 * 120.94189 * 0.02562 * 23 22 21 25 25 C 1.36539 * 120.97744 * 0.23993 * 24 23 22 26 26 C 1.39809 * 119.73565 * 359.48741 * 25 24 23 27 27 C 1.37966 * 119.93060 * 180.25329 * 2 1 3 28 28 H 1.08999 * 109.46755 * 90.00200 * 1 2 3 29 29 H 1.09002 * 109.46999 * 210.00082 * 1 2 3 30 30 H 1.08992 * 109.47057 * 330.00306 * 1 2 3 31 31 H 1.08002 * 119.86390 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.46972 * 30.02576 * 5 4 3 33 33 H 1.08997 * 109.47488 * 150.02467 * 5 4 3 34 34 H 0.96701 * 113.99734 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.06675 * 179.97438 * 7 4 3 36 36 H 1.08004 * 119.70081 * 359.96038 * 10 9 8 37 37 H 0.97002 * 120.00454 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.94229 * 180.02562 * 20 11 10 39 39 H 1.08003 * 120.19042 * 0.02562 * 22 21 20 40 40 H 1.07998 * 119.52448 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.50535 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.12479 * 179.73438 * 25 24 23 43 43 H 1.08002 * 120.07209 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1990 0.0000 4 6 3.5807 1.2070 0.0005 5 6 4.3251 2.5172 -0.0001 6 8 4.5604 2.9308 -1.3475 7 6 4.2803 0.0174 0.0005 8 6 3.5901 -1.1940 0.0005 9 6 4.3354 -2.4747 -0.0001 10 6 5.3379 -2.6897 -0.9038 11 6 6.0515 -3.9073 -0.9087 12 6 7.0833 -4.1046 -1.8524 13 1 7.6043 -3.2549 -2.2684 14 6 7.4306 -5.4008 -2.2487 15 7 6.6022 -6.3922 -2.0418 16 14 9.0770 -5.7161 -3.0730 17 1 10.0969 -6.0260 -2.0393 18 1 8.9518 -6.8652 -4.0052 19 1 9.4908 -4.5075 -3.8302 20 6 5.7531 -4.9219 0.0081 21 6 4.7338 -4.7402 0.9488 22 6 4.4149 -5.7469 1.8810 23 6 3.4168 -5.5365 2.7834 24 6 2.7053 -4.3396 2.7981 25 6 2.9847 -3.3450 1.9053 26 6 4.0064 -3.5219 0.9674 27 6 2.1954 -1.1956 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6543 2.1325 0.0004 32 1 3.7307 3.2730 0.5135 33 1 5.2784 2.3938 0.5138 34 1 5.0363 3.7691 -1.4242 35 1 5.3603 0.0249 0.0005 36 1 5.5860 -1.9211 -1.6208 37 1 6.8428 -7.2908 -2.3168 38 1 6.3105 -5.8467 -0.0109 39 1 4.9593 -6.6797 1.8807 40 1 3.1732 -6.3094 3.4973 41 1 1.9181 -4.1976 3.5237 42 1 2.4213 -2.4238 1.9263 43 1 1.6555 -2.1310 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243704826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:29 Heat of formation + Delta-G solvation = -19.637295 kcal Electronic energy + Delta-G solvation = -25233.262146 eV Core-core repulsion = 21785.081147 eV Total energy + Delta-G solvation = -3448.180999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06792 -39.98366 -37.64885 -37.43075 -35.51566 -33.93484 -33.60352 -31.60205 -31.20858 -29.56924 -27.79098 -27.17269 -26.83457 -24.38371 -23.27511 -22.96708 -21.51628 -21.15348 -19.19734 -18.36051 -17.88011 -17.64183 -17.26899 -16.75413 -16.59143 -16.14289 -15.69003 -15.11801 -14.95174 -14.78030 -14.61189 -14.25077 -14.20511 -14.08671 -13.97040 -13.65985 -13.30366 -13.24407 -12.98428 -12.93197 -12.73688 -12.63952 -12.50924 -12.22230 -12.06930 -11.96240 -11.70478 -11.37334 -11.24703 -10.97760 -10.92658 -10.44178 -9.68993 -9.54058 -9.27904 -8.70238 -8.40144 -6.33775 -0.17233 0.33942 0.47028 0.57073 1.33470 1.37319 1.48701 1.55408 2.15802 2.27283 2.71435 3.00856 3.54550 3.69022 3.74070 3.92540 4.07013 4.09095 4.18401 4.26470 4.31343 4.35048 4.44290 4.53697 4.56559 4.62826 4.67748 4.73606 4.86904 4.87410 4.90276 4.98345 5.06836 5.15447 5.18593 5.27923 5.31558 5.48627 5.55101 5.58609 5.64744 5.71747 5.73635 5.84340 5.96862 6.04869 6.05339 6.23220 6.42339 6.62430 6.83882 6.91729 6.93453 8.26816 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010428 B = 0.004464 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.444048 B = 6270.613704 C = 8334.477364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.106 4.106 4 C -0.097 4.097 5 C 0.120 3.880 6 O -0.590 6.590 7 C -0.112 4.112 8 C -0.041 4.041 9 C -0.043 4.043 10 C -0.153 4.153 11 C 0.077 3.923 12 C -0.488 4.488 13 H 0.079 0.921 14 C 0.034 3.966 15 N -0.815 5.815 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.256 1.256 20 C -0.234 4.234 21 C -0.022 4.022 22 C -0.161 4.161 23 C -0.105 4.105 24 C -0.178 4.178 25 C -0.086 4.086 26 C -0.138 4.138 27 C -0.115 4.115 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.289 0.711 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 13.131 5.751 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.097 4.097 5 C 0.043 3.957 6 O -0.399 6.399 7 C -0.130 4.130 8 C -0.041 4.041 9 C -0.043 4.043 10 C -0.172 4.172 11 C 0.075 3.925 12 C -0.516 4.516 13 H 0.097 0.903 14 C -0.182 4.182 15 N -0.439 5.439 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.180 1.180 20 C -0.254 4.254 21 C -0.022 4.022 22 C -0.180 4.180 23 C -0.123 4.123 24 C -0.196 4.196 25 C -0.104 4.104 26 C -0.138 4.138 27 C -0.133 4.133 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.146 0.854 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.309 12.341 5.565 15.884 hybrid contribution 1.511 -0.361 -0.611 1.670 sum -6.798 11.980 4.953 14.638 Atomic orbital electron populations 1.20833 0.88549 1.04022 1.03170 1.20158 0.97799 0.91993 0.98838 1.21235 0.92934 0.98470 0.99765 1.19828 0.94474 0.94275 1.01117 1.21017 0.98634 0.92216 0.83799 1.86539 1.80890 1.45642 1.26835 1.21164 0.99557 0.91568 1.00749 1.18833 0.93699 0.91558 1.00011 1.19534 0.96173 0.92741 0.95822 1.21188 0.97636 0.98414 0.99961 1.17712 0.91851 0.91347 0.91623 1.19891 1.16275 0.93885 1.21564 0.90323 1.26780 1.01275 0.94979 0.95123 1.69910 1.35468 1.02112 1.36457 0.85193 0.76990 0.79051 0.78461 1.18646 1.19069 1.18000 1.21075 1.03403 1.01807 0.99125 1.18228 0.95200 0.93478 0.95307 1.21071 1.00717 0.98375 0.97820 1.20945 0.95209 0.97991 0.98152 1.20874 1.02940 0.94291 1.01506 1.21032 0.95734 0.99375 0.94260 1.18827 1.00978 0.93934 1.00110 1.21262 0.92498 0.98630 1.00926 0.90510 0.91041 0.89326 0.83152 0.89816 0.92212 0.75040 0.87057 0.88048 0.89996 0.88150 0.87077 0.84204 0.84006 0.85399 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.27 16 2 C -0.09 -2.30 5.87 -19.90 -0.12 -2.41 16 3 C -0.11 -2.61 9.35 22.32 0.21 -2.41 16 4 C -0.10 -2.71 5.50 -19.90 -0.11 -2.82 16 5 C 0.12 2.49 7.17 71.24 0.51 3.00 16 6 O -0.59 -13.08 13.64 -148.98 -2.03 -15.11 16 7 C -0.11 -3.92 9.13 22.50 0.21 -3.72 16 8 C -0.04 -1.58 5.08 -20.05 -0.10 -1.68 16 9 C -0.04 -1.97 5.59 -18.90 -0.11 -2.08 16 10 C -0.15 -7.85 9.10 22.61 0.21 -7.64 16 11 C 0.08 4.32 5.55 -21.42 -0.12 4.20 16 12 C -0.49 -26.85 8.99 23.41 0.21 -26.64 16 13 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 14 C 0.03 1.77 5.09 85.25 0.43 2.20 16 15 N -0.81 -43.78 11.00 21.82 0.24 -43.54 16 16 Si 0.98 38.79 29.60 68.60 2.03 40.82 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 C -0.23 -13.07 8.39 23.09 0.19 -12.87 16 21 C -0.02 -1.11 5.74 -21.33 -0.12 -1.23 16 22 C -0.16 -7.03 9.78 22.43 0.22 -6.81 16 23 C -0.11 -3.75 9.95 22.04 0.22 -3.54 16 24 C -0.18 -6.08 9.96 22.12 0.22 -5.86 16 25 C -0.09 -3.33 8.69 22.25 0.19 -3.14 16 26 C -0.14 -6.43 5.88 -19.89 -0.12 -6.55 16 27 C -0.12 -3.81 7.33 22.50 0.16 -3.65 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.08 1.20 8.08 -2.38 -0.02 1.18 16 33 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.40 4.39 9.12 -74.06 -0.68 3.71 16 35 H 0.11 4.00 8.04 -2.91 -0.02 3.98 16 36 H 0.10 4.99 8.01 -2.91 -0.02 4.97 16 37 H 0.29 14.01 8.30 -92.71 -0.77 13.25 16 38 H 0.10 5.87 6.15 -2.91 -0.02 5.85 16 39 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.13 4.39 5.70 -2.91 -0.02 4.37 16 43 H 0.12 3.99 7.32 -2.91 -0.02 3.97 16 Total: -1.00 -68.90 360.97 3.50 -65.40 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.36 Total: 37.34 kcal Atomic # 6 Polarization: -87.81 SS G_CDS: 2.91 Total: -84.91 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.24 Total: -43.54 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -2.03 Total: -15.11 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -68.90 3.50 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243704826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.763 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds