Wall clock time and date at job start Tue Mar 31 2020 12:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 119.86673 * 2 1 4 4 C 1.37973 * 120.13162 * 179.97438 * 3 2 1 5 5 C 1.39468 * 119.86296 * 359.97438 * 4 3 2 6 6 C 1.48175 * 120.12758 * 179.97438 * 5 4 3 7 7 C 1.36679 * 120.34156 * 64.74516 * 6 5 4 8 8 C 1.41134 * 120.58913 * 179.76978 * 7 6 5 9 9 C 1.41214 * 119.48606 * 180.26176 * 8 7 6 10 10 H 1.07995 * 120.00307 * 25.87091 * 9 8 7 11 11 C 1.39927 * 119.99662 * 205.87052 * 9 8 7 12 12 N 1.30843 * 119.99980 * 18.22953 * 11 9 8 13 13 Si 1.86792 * 120.00210 * 198.23024 * 11 9 8 14 14 H 1.48502 * 109.47412 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47418 * 119.99834 * 13 11 9 16 16 H 1.48504 * 109.47494 * 239.99951 * 13 11 9 17 17 C 1.39957 * 121.01599 * 0.48759 * 8 7 6 18 18 C 1.39893 * 120.11555 * 359.77122 * 17 8 7 19 19 C 1.40858 * 121.13699 * 179.97438 * 18 17 8 20 20 C 1.36182 * 119.60594 * 180.02562 * 19 18 17 21 21 C 1.39246 * 120.94093 * 0.02562 * 20 19 18 22 22 C 1.36536 * 120.98216 * 359.97438 * 21 20 19 23 23 C 1.39808 * 119.73908 * 0.02562 * 22 21 20 24 24 C 1.39423 * 119.73810 * 359.97438 * 5 4 3 25 25 C 1.50702 * 120.06158 * 179.72520 * 24 5 4 26 26 O 1.42901 * 109.46674 * 180.02562 * 25 24 5 27 27 C 1.38008 * 119.87057 * 0.02562 * 24 5 4 28 28 H 1.09004 * 109.46464 * 90.00603 * 1 2 3 29 29 H 1.08993 * 109.47130 * 210.00439 * 1 2 3 30 30 H 1.09001 * 109.46946 * 330.01002 * 1 2 3 31 31 H 1.08003 * 119.93768 * 359.94600 * 3 2 1 32 32 H 1.07999 * 120.06481 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.70075 * 359.97438 * 7 6 5 34 34 H 0.96998 * 119.99679 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.94138 * 179.75541 * 17 8 7 36 36 H 1.08003 * 120.19736 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.52930 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.50896 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.13206 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47403 * 300.00063 * 25 24 5 41 41 H 1.08994 * 109.47257 * 60.00624 * 25 24 5 42 42 H 0.96709 * 113.99786 * 180.02562 * 26 25 24 43 43 H 1.07999 * 119.93541 * 179.97438 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1998 0.0000 4 6 3.5758 1.2062 0.0005 5 6 4.2758 -0.0001 0.0016 6 6 5.7576 -0.0001 0.0016 7 6 6.4480 0.5042 1.0680 8 6 7.8593 0.5024 1.0756 9 6 8.5490 1.0241 2.1919 10 1 8.0771 1.0313 3.1633 11 6 9.8440 1.5318 2.0395 12 7 10.2836 1.8566 0.8507 13 14 10.9452 1.7457 3.5331 14 1 10.2177 1.3079 4.7514 15 1 12.1705 0.9234 3.3666 16 1 11.3233 3.1754 3.6687 17 6 8.5857 -0.0043 -0.0081 18 6 7.9156 -0.5243 -1.1206 19 6 8.6251 -1.0391 -2.2232 20 6 7.9411 -1.5373 -3.2902 21 6 6.5487 -1.5449 -3.3079 22 6 5.8298 -1.0538 -2.2561 23 6 6.4967 -0.5339 -1.1427 24 6 3.5759 -1.2059 0.0027 25 6 4.3249 -2.5136 -0.0024 26 8 3.3925 -3.5965 -0.0008 27 6 2.1958 -1.1995 0.0021 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.6529 2.1333 -0.0009 32 1 4.1125 2.1434 0.0001 33 1 5.9087 0.9045 1.9137 34 1 11.1812 2.2089 0.7451 35 1 9.6654 0.0065 0.0144 36 1 9.7051 -1.0387 -2.2224 37 1 8.4863 -1.9313 -4.1351 38 1 6.0298 -1.9452 -4.1662 39 1 4.7502 -1.0669 -2.2841 40 1 4.9477 -2.5721 -0.8950 41 1 4.9549 -2.5748 0.8849 42 1 3.8054 -4.4710 -0.0034 43 1 1.6526 -2.1329 0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244492009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:26 Heat of formation + Delta-G solvation = -3.789819 kcal Electronic energy + Delta-G solvation = -25753.054368 eV Core-core repulsion = 22305.560567 eV Total energy + Delta-G solvation = -3447.493801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.75834 -38.42225 -36.47630 -35.76053 -34.09894 -32.63344 -31.09011 -30.76944 -29.59971 -28.48801 -26.49547 -25.55949 -25.17840 -22.35383 -21.67382 -21.38178 -20.79708 -19.55843 -17.74182 -17.11557 -16.16502 -16.12348 -15.45698 -15.06604 -14.75897 -14.72232 -14.52607 -14.27952 -13.53620 -13.46963 -13.28476 -13.23168 -12.59724 -12.55023 -12.43727 -12.17327 -12.09727 -11.91854 -11.57682 -11.54609 -11.25631 -11.00601 -10.84150 -10.77183 -10.69754 -10.47244 -10.11431 -9.95139 -9.70282 -9.59811 -9.20838 -8.70192 -8.43669 -8.02400 -7.55368 -6.93368 -6.75550 -4.45092 1.41814 1.71751 1.81439 2.24159 2.90790 2.99688 3.04309 3.19614 3.80400 3.94778 4.04851 4.37231 4.73077 5.03076 5.07745 5.26826 5.31405 5.47307 5.60031 5.64844 5.68546 5.71310 5.74304 5.80078 5.84487 5.88065 5.89739 6.04828 6.19177 6.29179 6.35313 6.43308 6.55937 6.61897 6.73547 6.82827 6.85643 6.92317 6.95957 7.02385 7.22223 7.30796 7.35270 7.41551 7.49350 7.64004 7.76373 7.85061 8.01610 8.09731 8.45820 8.67592 8.74032 10.00889 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004438 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.846283 B = 6308.203243 C = 7573.482834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.106 4.106 5 C -0.019 4.019 6 C -0.056 4.056 7 C -0.123 4.123 8 C 0.101 3.899 9 C -0.448 4.448 10 H 0.081 0.919 11 C 0.074 3.926 12 N -0.776 5.776 13 Si 0.907 3.093 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.273 1.273 17 C -0.206 4.206 18 C 0.002 3.998 19 C -0.137 4.137 20 C -0.118 4.118 21 C -0.190 4.190 22 C -0.081 4.081 23 C -0.119 4.119 24 C -0.076 4.076 25 C 0.110 3.890 26 O -0.575 6.575 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.379 0.621 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 -4.484 -1.799 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.124 4.124 5 C -0.019 4.019 6 C -0.056 4.056 7 C -0.142 4.142 8 C 0.098 3.902 9 C -0.476 4.476 10 H 0.099 0.901 11 C -0.146 4.146 12 N -0.400 5.400 13 Si 0.731 3.269 14 H -0.183 1.183 15 H -0.195 1.195 16 H -0.198 1.198 17 C -0.226 4.226 18 C 0.002 3.998 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.209 4.209 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.076 4.076 25 C 0.033 3.967 26 O -0.381 6.381 27 C -0.118 4.118 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.225 0.775 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.730 -3.858 -1.896 10.637 hybrid contribution 1.123 -0.096 0.545 1.252 sum -8.607 -3.954 -1.351 9.567 Atomic orbital electron populations 1.20728 0.91651 1.02283 1.01859 1.19883 0.95725 0.93182 1.01580 1.20903 0.94021 0.97217 1.01898 1.21221 0.93694 0.97467 0.99976 1.18627 0.92700 0.91954 0.98588 1.19163 0.89342 1.01972 0.95153 1.21161 0.94677 1.01224 0.97088 1.17394 0.89921 0.89441 0.93440 1.19690 0.98397 1.33652 0.95869 0.90109 1.25925 0.98396 0.93062 0.97184 1.69848 1.17794 1.28425 1.23952 0.86263 0.79969 0.78707 0.81914 1.18260 1.19525 1.19842 1.21166 0.99467 1.07092 0.94895 1.17917 0.91590 0.95969 0.94356 1.20914 0.98670 1.01755 0.94184 1.20489 0.94204 1.01097 0.97876 1.20345 0.94006 1.07408 0.99119 1.20677 0.98255 0.97547 0.93404 1.18441 0.92295 1.06729 0.94554 1.19702 0.93615 0.93222 1.01038 1.21156 0.89896 0.83871 1.01779 1.86359 1.36775 1.17036 1.97924 1.20723 0.93390 0.97477 1.00238 0.91630 0.91859 0.91925 0.86440 0.85766 0.87969 0.90597 0.86089 0.87326 0.88141 0.88246 0.87723 0.90641 0.92208 0.77461 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.10 -1.47 5.88 -104.54 -0.62 -2.09 16 3 C -0.12 -1.79 9.68 -39.63 -0.38 -2.17 16 4 C -0.11 -1.79 9.73 -39.22 -0.38 -2.17 16 5 C -0.02 -0.35 4.55 -104.92 -0.48 -0.82 16 6 C -0.06 -1.19 4.76 -103.13 -0.49 -1.68 16 7 C -0.12 -2.79 9.31 -39.05 -0.36 -3.15 16 8 C 0.10 2.51 5.55 -107.02 -0.59 1.92 16 9 C -0.45 -11.10 8.99 -37.82 -0.34 -11.44 16 10 H 0.08 1.92 7.91 -52.49 -0.42 1.50 16 11 C 0.07 1.75 5.09 -17.34 -0.09 1.66 16 12 N -0.78 -19.14 11.00 55.55 0.61 -18.53 16 13 Si 0.91 17.69 29.60 -169.99 -5.03 12.66 16 14 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 C -0.21 -5.15 8.39 -38.32 -0.32 -5.47 16 18 C 0.00 0.05 5.74 -106.88 -0.61 -0.57 16 19 C -0.14 -2.85 9.78 -39.33 -0.38 -3.23 16 20 C -0.12 -2.20 9.95 -39.95 -0.40 -2.60 16 21 C -0.19 -3.49 9.96 -39.82 -0.40 -3.89 16 22 C -0.08 -1.58 7.09 -39.61 -0.28 -1.86 16 23 C -0.12 -2.60 5.36 -104.66 -0.56 -3.16 16 24 C -0.08 -1.31 4.98 -104.26 -0.52 -1.82 16 25 C 0.11 1.77 6.22 36.01 0.22 2.00 16 26 O -0.58 -7.97 12.14 -35.23 -0.43 -8.39 16 27 C -0.10 -1.57 9.02 -39.64 -0.36 -1.93 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 35 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 36 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.10 1.95 6.25 -52.48 -0.33 1.63 16 40 H 0.08 1.28 4.96 -51.93 -0.26 1.02 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.38 3.48 9.12 45.56 0.42 3.90 16 43 H 0.13 1.90 7.00 -52.49 -0.37 1.53 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -27.40 354.58 -11.12 -38.52 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.63 Total: 13.67 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: -6.98 Total: -43.27 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.61 Total: -18.53 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.43 Total: -8.39 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.40 -11.12 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244492009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.728 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds