Wall clock time and date at job start Tue Mar 31 2020 12:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 119.86673 * 2 1 4 4 C 1.37973 * 120.13162 * 179.97438 * 3 2 1 5 5 C 1.39468 * 119.86296 * 359.97438 * 4 3 2 6 6 C 1.48175 * 120.12758 * 179.97438 * 5 4 3 7 7 C 1.36679 * 120.34156 * 64.74516 * 6 5 4 8 8 C 1.41134 * 120.58913 * 179.76978 * 7 6 5 9 9 C 1.41214 * 119.48606 * 180.26176 * 8 7 6 10 10 H 1.07995 * 120.00307 * 25.87091 * 9 8 7 11 11 C 1.39927 * 119.99662 * 205.87052 * 9 8 7 12 12 N 1.30843 * 119.99980 * 18.22953 * 11 9 8 13 13 Si 1.86792 * 120.00210 * 198.23024 * 11 9 8 14 14 H 1.48502 * 109.47412 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47418 * 119.99834 * 13 11 9 16 16 H 1.48504 * 109.47494 * 239.99951 * 13 11 9 17 17 C 1.39957 * 121.01599 * 0.48759 * 8 7 6 18 18 C 1.39893 * 120.11555 * 359.77122 * 17 8 7 19 19 C 1.40858 * 121.13699 * 179.97438 * 18 17 8 20 20 C 1.36182 * 119.60594 * 180.02562 * 19 18 17 21 21 C 1.39246 * 120.94093 * 0.02562 * 20 19 18 22 22 C 1.36536 * 120.98216 * 359.97438 * 21 20 19 23 23 C 1.39808 * 119.73908 * 0.02562 * 22 21 20 24 24 C 1.39423 * 119.73810 * 359.97438 * 5 4 3 25 25 C 1.50702 * 120.06158 * 179.72520 * 24 5 4 26 26 O 1.42901 * 109.46674 * 180.02562 * 25 24 5 27 27 C 1.38008 * 119.87057 * 0.02562 * 24 5 4 28 28 H 1.09004 * 109.46464 * 90.00603 * 1 2 3 29 29 H 1.08993 * 109.47130 * 210.00439 * 1 2 3 30 30 H 1.09001 * 109.46946 * 330.01002 * 1 2 3 31 31 H 1.08003 * 119.93768 * 359.94600 * 3 2 1 32 32 H 1.07999 * 120.06481 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.70075 * 359.97438 * 7 6 5 34 34 H 0.96998 * 119.99679 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.94138 * 179.75541 * 17 8 7 36 36 H 1.08003 * 120.19736 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.52930 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.50896 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.13206 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47403 * 300.00063 * 25 24 5 41 41 H 1.08994 * 109.47257 * 60.00624 * 25 24 5 42 42 H 0.96709 * 113.99786 * 180.02562 * 26 25 24 43 43 H 1.07999 * 119.93541 * 179.97438 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1998 0.0000 4 6 3.5758 1.2062 0.0005 5 6 4.2758 -0.0001 0.0016 6 6 5.7576 -0.0001 0.0016 7 6 6.4480 0.5042 1.0680 8 6 7.8593 0.5024 1.0756 9 6 8.5490 1.0241 2.1919 10 1 8.0771 1.0313 3.1633 11 6 9.8440 1.5318 2.0395 12 7 10.2836 1.8566 0.8507 13 14 10.9452 1.7457 3.5331 14 1 10.2177 1.3079 4.7514 15 1 12.1705 0.9234 3.3666 16 1 11.3233 3.1754 3.6687 17 6 8.5857 -0.0043 -0.0081 18 6 7.9156 -0.5243 -1.1206 19 6 8.6251 -1.0391 -2.2232 20 6 7.9411 -1.5373 -3.2902 21 6 6.5487 -1.5449 -3.3079 22 6 5.8298 -1.0538 -2.2561 23 6 6.4967 -0.5339 -1.1427 24 6 3.5759 -1.2059 0.0027 25 6 4.3249 -2.5136 -0.0024 26 8 3.3925 -3.5965 -0.0008 27 6 2.1958 -1.1995 0.0021 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.6529 2.1333 -0.0009 32 1 4.1125 2.1434 0.0001 33 1 5.9087 0.9045 1.9137 34 1 11.1812 2.2089 0.7451 35 1 9.6654 0.0065 0.0144 36 1 9.7051 -1.0387 -2.2224 37 1 8.4863 -1.9313 -4.1351 38 1 6.0298 -1.9452 -4.1662 39 1 4.7502 -1.0669 -2.2841 40 1 4.9477 -2.5721 -0.8950 41 1 4.9549 -2.5748 0.8849 42 1 3.8054 -4.4710 -0.0034 43 1 1.6526 -2.1329 0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244492009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:25 Heat of formation + Delta-G solvation = -16.229425 kcal Electronic energy + Delta-G solvation = -25753.593790 eV Core-core repulsion = 22305.560567 eV Total energy + Delta-G solvation = -3448.033223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.18899 -39.89512 -37.66125 -37.40560 -35.63411 -34.16954 -32.33082 -32.22949 -31.29937 -30.01417 -27.73527 -27.08285 -26.66439 -23.89449 -23.10581 -23.00100 -22.22745 -20.97392 -19.39202 -18.32863 -17.82925 -17.69618 -16.86210 -16.70192 -16.07986 -15.98218 -15.87025 -15.73993 -14.91664 -14.78860 -14.65515 -14.44360 -14.22523 -14.08212 -13.92988 -13.74076 -13.32442 -13.08239 -12.98576 -12.90104 -12.70488 -12.62889 -12.50550 -12.10373 -12.03962 -11.89849 -11.67375 -11.37942 -11.29683 -11.18158 -10.93603 -10.33641 -9.69288 -9.32313 -9.27040 -8.69949 -8.44167 -6.32518 -0.10018 0.40385 0.47201 0.57076 1.33062 1.37459 1.50793 1.52508 2.16233 2.27765 2.77500 3.00482 3.24618 3.70160 3.79958 3.91753 4.06071 4.08851 4.14110 4.27387 4.32095 4.41764 4.50319 4.55472 4.62425 4.70238 4.73551 4.78342 4.86163 4.89594 4.92416 4.96259 5.15376 5.16491 5.21473 5.29778 5.31640 5.44016 5.56126 5.66216 5.68247 5.72988 5.74019 5.84770 5.96771 6.06136 6.09416 6.24266 6.41649 6.63809 6.82836 6.85200 6.93161 8.27227 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004438 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.846283 B = 6308.203243 C = 7573.482834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.047 4.047 6 C -0.038 4.038 7 C -0.150 4.150 8 C 0.079 3.921 9 C -0.486 4.486 10 H 0.079 0.921 11 C 0.036 3.964 12 N -0.813 5.813 13 Si 0.980 3.020 14 H -0.257 1.257 15 H -0.265 1.265 16 H -0.265 1.265 17 C -0.233 4.233 18 C -0.020 4.020 19 C -0.159 4.159 20 C -0.105 4.105 21 C -0.178 4.178 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.085 4.085 25 C 0.119 3.881 26 O -0.575 6.575 27 C -0.106 4.106 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.289 0.711 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.399 0.601 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 -5.400 -3.201 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.047 4.047 6 C -0.038 4.038 7 C -0.169 4.169 8 C 0.077 3.923 9 C -0.515 4.515 10 H 0.097 0.903 11 C -0.180 4.180 12 N -0.438 5.438 13 Si 0.800 3.200 14 H -0.180 1.180 15 H -0.190 1.190 16 H -0.189 1.189 17 C -0.254 4.254 18 C -0.020 4.020 19 C -0.177 4.177 20 C -0.123 4.123 21 C -0.196 4.196 22 C -0.100 4.100 23 C -0.134 4.134 24 C -0.085 4.085 25 C 0.041 3.959 26 O -0.384 6.384 27 C -0.124 4.124 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.249 0.751 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.289 -4.797 -3.310 13.601 hybrid contribution 1.697 0.060 0.762 1.862 sum -10.592 -4.737 -2.547 11.879 Atomic orbital electron populations 1.20814 0.88609 1.03713 1.03248 1.20339 0.97869 0.92284 0.98888 1.21212 0.92935 0.98895 1.00654 1.21306 0.95050 0.96657 1.00509 1.18562 0.91101 0.93402 1.01664 1.19421 0.91098 0.99362 0.93947 1.21185 0.94076 1.03402 0.98219 1.17689 0.91118 0.89751 0.93783 1.19908 0.99931 1.35701 0.95916 0.90328 1.26740 0.99157 0.92112 1.00020 1.69914 1.18456 1.29496 1.25964 0.85190 0.77799 0.78899 0.78072 1.18024 1.18953 1.18943 1.21061 0.98557 1.09367 0.96368 1.18197 0.92695 0.96398 0.94685 1.21074 0.99143 1.02902 0.94587 1.20908 0.94639 0.98923 0.97782 1.20832 0.94048 1.05237 0.99477 1.20811 0.98927 0.97304 0.92952 1.18734 0.91951 1.07018 0.95673 1.19805 0.94520 0.92888 1.01302 1.20898 0.89845 0.84561 1.00563 1.86311 1.36442 1.17813 1.97784 1.20927 0.92669 0.98665 1.00134 0.90072 0.90834 0.90219 0.83452 0.86442 0.87926 0.90037 0.88220 0.87059 0.84310 0.84402 0.86535 0.91448 0.93885 0.75102 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.09 -2.37 5.88 -19.81 -0.12 -2.49 16 3 C -0.12 -3.20 9.68 22.24 0.22 -2.99 16 4 C -0.12 -3.94 9.73 22.50 0.22 -3.73 16 5 C -0.05 -1.77 4.55 -20.05 -0.09 -1.86 16 6 C -0.04 -1.68 4.76 -18.90 -0.09 -1.77 16 7 C -0.15 -7.33 9.31 22.62 0.21 -7.12 16 8 C 0.08 4.26 5.55 -21.42 -0.12 4.14 16 9 C -0.49 -25.93 8.99 23.41 0.21 -25.72 16 10 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 11 C 0.04 1.79 5.09 85.25 0.43 2.22 16 12 N -0.81 -42.62 11.00 21.82 0.24 -42.38 16 13 Si 0.98 37.86 29.60 68.60 2.03 39.89 16 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 15 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 C -0.23 -12.56 8.39 23.09 0.19 -12.37 16 18 C -0.02 -0.95 5.74 -21.33 -0.12 -1.07 16 19 C -0.16 -6.65 9.78 22.43 0.22 -6.44 16 20 C -0.10 -3.62 9.95 22.03 0.22 -3.40 16 21 C -0.18 -5.95 9.96 22.11 0.22 -5.73 16 22 C -0.08 -3.10 7.09 22.25 0.16 -2.94 16 23 C -0.13 -5.93 5.36 -19.89 -0.11 -6.03 16 24 C -0.09 -2.87 4.98 -19.63 -0.10 -2.97 16 25 C 0.12 3.79 6.22 71.24 0.44 4.23 16 26 O -0.58 -14.88 12.14 -148.98 -1.81 -16.69 16 27 C -0.11 -3.09 9.02 22.23 0.20 -2.89 16 28 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 30 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 35 H 0.10 5.66 6.15 -2.91 -0.02 5.64 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.12 4.13 6.25 -2.91 -0.02 4.11 16 40 H 0.07 2.24 4.96 -2.39 -0.01 2.23 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.40 6.56 9.12 -74.05 -0.68 5.88 16 43 H 0.14 3.70 7.00 -2.91 -0.02 3.68 16 Total: -1.00 -63.34 354.58 3.74 -59.60 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: 0.37 Total: 39.60 kcal Atomic # 6 Polarization: -82.93 SS G_CDS: 2.91 Total: -80.02 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.24 Total: -42.38 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.81 Total: -16.69 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -63.34 3.74 -59.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244492009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.373 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds