Wall clock time and date at job start Tue Mar 31 2020 12:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38010 * 120.06841 * 2 1 4 4 C 1.38324 * 120.13171 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.86515 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46877 * 89.99915 * 5 4 3 7 7 C 1.38358 * 120.26610 * 359.97436 * 4 3 2 8 8 C 1.37974 * 120.13148 * 359.74769 * 7 4 3 9 9 C 1.39425 * 120.06740 * 179.97438 * 2 1 3 10 10 C 1.48180 * 120.12796 * 359.97438 * 9 2 1 11 11 C 1.36676 * 120.34071 * 245.01621 * 10 9 2 12 12 C 1.41122 * 120.58774 * 179.97438 * 11 10 9 13 13 C 1.41225 * 119.48804 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99859 * 334.13224 * 13 12 11 15 15 C 1.39925 * 119.99614 * 154.13059 * 13 12 11 16 16 N 1.30836 * 120.00597 * 341.87164 * 15 13 12 17 17 Si 1.86806 * 119.99796 * 161.87265 * 15 13 12 18 18 H 1.48501 * 109.47069 * 94.61063 * 17 15 13 19 19 H 1.48500 * 109.47223 * 214.60940 * 17 15 13 20 20 H 1.48495 * 109.46749 * 334.61080 * 17 15 13 21 21 C 1.39955 * 121.02121 * 359.97438 * 12 11 10 22 22 C 1.39889 * 120.11326 * 0.04418 * 21 12 11 23 23 C 1.40858 * 121.14395 * 179.97438 * 22 21 12 24 24 C 1.36190 * 119.60721 * 179.97438 * 23 22 21 25 25 C 1.39249 * 120.94344 * 0.02562 * 24 23 22 26 26 C 1.36535 * 120.97859 * 0.23428 * 25 24 23 27 27 C 1.39812 * 119.73354 * 359.48959 * 26 25 24 28 28 H 1.09007 * 109.46747 * 270.02551 * 1 2 3 29 29 H 1.08999 * 109.47144 * 30.01768 * 1 2 3 30 30 H 1.08998 * 109.47548 * 150.02520 * 1 2 3 31 31 H 1.07996 * 119.93500 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 209.99629 * 5 4 3 33 33 H 1.08996 * 109.47690 * 329.99949 * 5 4 3 34 34 H 0.96698 * 113.99850 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.93602 * 179.97438 * 7 4 3 36 36 H 1.07997 * 120.06594 * 180.25300 * 8 7 4 37 37 H 1.08003 * 119.70264 * 359.96285 * 11 10 9 38 38 H 0.97002 * 120.00358 * 179.97438 * 16 15 13 39 39 H 1.08005 * 119.94794 * 180.02562 * 21 12 11 40 40 H 1.08007 * 120.19923 * 359.97438 * 23 22 21 41 41 H 1.07998 * 119.52934 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.50927 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.13296 * 179.73959 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1944 0.0000 4 6 3.5817 1.1959 -0.0005 5 6 4.3307 2.5036 -0.0011 6 8 4.5679 2.9172 1.3460 7 6 4.2804 0.0017 -0.0005 8 6 3.6001 -1.1987 0.0052 9 6 2.2055 -1.2066 0.0005 10 6 1.4690 -2.4924 0.0017 11 6 1.5586 -3.3384 1.0714 12 6 0.8589 -4.5640 1.0782 13 6 0.9677 -5.4203 2.1960 14 1 1.8460 -5.3808 2.8230 15 6 -0.0627 -6.3199 2.4909 16 7 -1.2530 -6.1424 1.9777 17 14 0.2613 -7.7744 3.6175 18 1 -0.1202 -7.4182 5.0078 19 1 -0.5427 -8.9386 3.1665 20 1 1.7042 -8.1224 3.5738 21 6 0.0582 -4.9434 -0.0051 22 6 -0.0590 -4.1051 -1.1188 23 6 -0.8584 -4.4657 -2.2211 24 6 -0.9505 -3.6255 -3.2890 25 6 -0.2647 -2.4137 -3.3078 26 6 0.5230 -2.0356 -2.2586 27 6 0.6377 -2.8691 -1.1420 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6585 2.1297 -0.0004 32 1 5.2834 2.3764 -0.5152 33 1 3.7389 3.2611 -0.5149 34 1 5.0473 3.7535 1.4220 35 1 5.3603 0.0091 -0.0014 36 1 4.1466 -2.1302 0.0094 37 1 2.1704 -3.0666 1.9189 38 1 -1.9672 -6.7663 2.1819 39 1 -0.4700 -5.8852 0.0187 40 1 -1.3952 -5.4029 -2.2195 41 1 -1.5634 -3.9033 -4.1336 42 1 -0.3540 -1.7652 -4.1668 43 1 1.0521 -1.0946 -2.2894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244585006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:35 Heat of formation + Delta-G solvation = -1.935474 kcal Electronic energy + Delta-G solvation = -25459.095389 eV Core-core repulsion = 22011.681998 eV Total energy + Delta-G solvation = -3447.413391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.74380 -38.49902 -36.74207 -35.69747 -33.81378 -32.69496 -31.71347 -30.37416 -29.55509 -28.24967 -26.68285 -25.65571 -25.06301 -22.32615 -21.74127 -21.34470 -20.81280 -19.51975 -17.66576 -17.53919 -16.19837 -16.08001 -15.61587 -15.47992 -14.99954 -14.73719 -14.27379 -13.93863 -13.60548 -13.49664 -13.13269 -12.88919 -12.75820 -12.54379 -12.44120 -12.21035 -12.03550 -11.76883 -11.61629 -11.42519 -11.19114 -10.97552 -10.86917 -10.76940 -10.72740 -10.46865 -10.18229 -10.03557 -9.68032 -9.57042 -9.13917 -8.68059 -8.49997 -8.13636 -7.50949 -6.89847 -6.72104 -4.41440 1.37235 1.68778 1.80336 2.27965 2.93674 3.01395 3.06601 3.22929 3.83165 3.86486 4.01568 4.47487 4.77330 4.90428 4.97966 5.17771 5.27569 5.30334 5.33279 5.57562 5.59737 5.73104 5.75341 5.81583 5.89924 5.98716 6.08755 6.18349 6.25465 6.27852 6.38402 6.56506 6.59889 6.65865 6.74995 6.76405 6.88206 6.94638 6.98952 7.05527 7.23351 7.30206 7.38545 7.44815 7.48163 7.52688 7.67733 7.88302 8.05301 8.13257 8.49223 8.71132 8.77666 10.04333 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.004154 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.735721 B = 6739.565346 C = 8422.695941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.103 4.103 4 C -0.106 4.106 5 C 0.121 3.879 6 O -0.567 6.567 7 C -0.107 4.107 8 C -0.110 4.110 9 C -0.010 4.010 10 C -0.053 4.053 11 C -0.125 4.125 12 C 0.102 3.898 13 C -0.448 4.448 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.777 5.777 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.206 4.206 22 C 0.002 3.998 23 C -0.138 4.138 24 C -0.118 4.118 25 C -0.192 4.192 26 C -0.077 4.077 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.375 0.625 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.283 0.717 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 10.882 -4.274 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.121 4.121 4 C -0.107 4.107 5 C 0.044 3.956 6 O -0.372 6.372 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.010 4.010 10 C -0.053 4.053 11 C -0.143 4.143 12 C 0.099 3.901 13 C -0.477 4.477 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.401 5.401 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.226 4.226 22 C 0.002 3.998 23 C -0.156 4.156 24 C -0.137 4.137 25 C -0.210 4.210 26 C -0.095 4.095 27 C -0.119 4.119 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.222 0.778 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.232 10.223 -4.125 12.203 hybrid contribution 0.304 -0.130 0.426 0.540 sum 5.536 10.093 -3.698 12.091 Atomic orbital electron populations 1.21025 0.90972 1.03613 1.02611 1.19996 0.96286 0.91887 0.99131 1.20765 0.93166 0.97343 1.00826 1.19481 0.93594 0.93767 1.03811 1.20949 0.97776 0.93372 0.83488 1.86622 1.80010 1.43894 1.26710 1.20843 0.99289 0.91787 1.00553 1.21261 0.93419 0.97880 1.00234 1.18870 0.92597 0.92495 0.97001 1.19127 0.98546 0.92647 0.94950 1.21135 1.02167 0.94412 0.96607 1.17379 0.90391 0.89798 0.92513 1.19656 1.03286 1.15449 1.09295 0.90173 1.25917 0.94162 0.98286 0.96157 1.69838 1.01105 1.33087 1.36066 0.86309 0.80038 0.80454 0.80100 1.19461 1.19877 1.18280 1.21153 1.08334 1.00726 0.92403 1.17913 0.94484 0.93177 0.94263 1.20908 1.00785 0.99611 0.94300 1.20484 1.00221 0.95068 0.97886 1.20331 1.03292 0.98152 0.99233 1.20664 0.97628 0.97958 0.93214 1.18413 1.02572 0.96288 0.94583 0.91416 0.92340 0.89231 0.86443 0.93067 0.93100 0.77819 0.86430 0.85760 0.88020 0.90591 0.86129 0.87359 0.88189 0.88293 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.21 36.00 0.33 -1.74 16 2 C -0.07 -1.24 4.98 -104.26 -0.52 -1.76 16 3 C -0.10 -1.54 9.34 -39.63 -0.37 -1.91 16 4 C -0.11 -1.51 5.51 -104.55 -0.58 -2.08 16 5 C 0.12 1.30 7.16 36.00 0.26 1.56 16 6 O -0.57 -6.40 13.64 -35.23 -0.48 -6.88 16 7 C -0.11 -1.56 9.68 -39.63 -0.38 -1.95 16 8 C -0.11 -1.84 9.73 -39.22 -0.38 -2.23 16 9 C -0.01 -0.18 4.54 -104.91 -0.48 -0.66 16 10 C -0.05 -1.12 4.70 -103.13 -0.48 -1.61 16 11 C -0.12 -2.88 9.31 -39.05 -0.36 -3.25 16 12 C 0.10 2.58 5.55 -107.03 -0.59 1.99 16 13 C -0.45 -11.30 8.99 -37.82 -0.34 -11.64 16 14 H 0.08 1.92 7.91 -52.49 -0.42 1.51 16 15 C 0.07 1.79 5.09 -17.34 -0.09 1.70 16 16 N -0.78 -19.37 11.01 55.55 0.61 -18.76 16 17 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.21 -5.22 8.38 -38.32 -0.32 -5.54 16 22 C 0.00 0.05 5.74 -106.88 -0.61 -0.57 16 23 C -0.14 -2.90 9.78 -39.33 -0.38 -3.29 16 24 C -0.12 -2.22 9.95 -39.94 -0.40 -2.62 16 25 C -0.19 -3.53 9.96 -39.82 -0.40 -3.93 16 26 C -0.08 -1.50 7.54 -39.61 -0.30 -1.80 16 27 C -0.12 -2.59 4.82 -104.66 -0.50 -3.10 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.09 1.68 4.35 -51.93 -0.23 1.45 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.38 2.17 9.12 45.56 0.42 2.58 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 40 H 0.11 2.15 8.06 -52.48 -0.42 1.72 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.10 1.90 6.39 -52.49 -0.34 1.57 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -28.47 356.58 -11.09 -39.56 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.66 Total: 12.22 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: -6.91 Total: -44.42 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.61 Total: -18.76 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.48 Total: -6.88 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.47 -11.09 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244585006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.624 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds