Wall clock time and date at job start Tue Mar 31 2020 12:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38010 * 120.06841 * 2 1 4 4 C 1.38324 * 120.13171 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.86515 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46877 * 89.99915 * 5 4 3 7 7 C 1.38358 * 120.26610 * 359.97436 * 4 3 2 8 8 C 1.37974 * 120.13148 * 359.74769 * 7 4 3 9 9 C 1.39425 * 120.06740 * 179.97438 * 2 1 3 10 10 C 1.48180 * 120.12796 * 359.97438 * 9 2 1 11 11 C 1.36676 * 120.34071 * 245.01621 * 10 9 2 12 12 C 1.41122 * 120.58774 * 179.97438 * 11 10 9 13 13 C 1.41225 * 119.48804 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99859 * 334.13224 * 13 12 11 15 15 C 1.39925 * 119.99614 * 154.13059 * 13 12 11 16 16 N 1.30836 * 120.00597 * 341.87164 * 15 13 12 17 17 Si 1.86806 * 119.99796 * 161.87265 * 15 13 12 18 18 H 1.48501 * 109.47069 * 94.61063 * 17 15 13 19 19 H 1.48500 * 109.47223 * 214.60940 * 17 15 13 20 20 H 1.48495 * 109.46749 * 334.61080 * 17 15 13 21 21 C 1.39955 * 121.02121 * 359.97438 * 12 11 10 22 22 C 1.39889 * 120.11326 * 0.04418 * 21 12 11 23 23 C 1.40858 * 121.14395 * 179.97438 * 22 21 12 24 24 C 1.36190 * 119.60721 * 179.97438 * 23 22 21 25 25 C 1.39249 * 120.94344 * 0.02562 * 24 23 22 26 26 C 1.36535 * 120.97859 * 0.23428 * 25 24 23 27 27 C 1.39812 * 119.73354 * 359.48959 * 26 25 24 28 28 H 1.09007 * 109.46747 * 270.02551 * 1 2 3 29 29 H 1.08999 * 109.47144 * 30.01768 * 1 2 3 30 30 H 1.08998 * 109.47548 * 150.02520 * 1 2 3 31 31 H 1.07996 * 119.93500 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47153 * 209.99629 * 5 4 3 33 33 H 1.08996 * 109.47690 * 329.99949 * 5 4 3 34 34 H 0.96698 * 113.99850 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.93602 * 179.97438 * 7 4 3 36 36 H 1.07997 * 120.06594 * 180.25300 * 8 7 4 37 37 H 1.08003 * 119.70264 * 359.96285 * 11 10 9 38 38 H 0.97002 * 120.00358 * 179.97438 * 16 15 13 39 39 H 1.08005 * 119.94794 * 180.02562 * 21 12 11 40 40 H 1.08007 * 120.19923 * 359.97438 * 23 22 21 41 41 H 1.07998 * 119.52934 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.50927 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.13296 * 179.73959 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1944 0.0000 4 6 3.5817 1.1959 -0.0005 5 6 4.3307 2.5036 -0.0011 6 8 4.5679 2.9172 1.3460 7 6 4.2804 0.0017 -0.0005 8 6 3.6001 -1.1987 0.0052 9 6 2.2055 -1.2066 0.0005 10 6 1.4690 -2.4924 0.0017 11 6 1.5586 -3.3384 1.0714 12 6 0.8589 -4.5640 1.0782 13 6 0.9677 -5.4203 2.1960 14 1 1.8460 -5.3808 2.8230 15 6 -0.0627 -6.3199 2.4909 16 7 -1.2530 -6.1424 1.9777 17 14 0.2613 -7.7744 3.6175 18 1 -0.1202 -7.4182 5.0078 19 1 -0.5427 -8.9386 3.1665 20 1 1.7042 -8.1224 3.5738 21 6 0.0582 -4.9434 -0.0051 22 6 -0.0590 -4.1051 -1.1188 23 6 -0.8584 -4.4657 -2.2211 24 6 -0.9505 -3.6255 -3.2890 25 6 -0.2647 -2.4137 -3.3078 26 6 0.5230 -2.0356 -2.2586 27 6 0.6377 -2.8691 -1.1420 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6585 2.1297 -0.0004 32 1 5.2834 2.3764 -0.5152 33 1 3.7389 3.2611 -0.5149 34 1 5.0473 3.7535 1.4220 35 1 5.3603 0.0091 -0.0014 36 1 4.1466 -2.1302 0.0094 37 1 2.1704 -3.0666 1.9189 38 1 -1.9672 -6.7663 2.1819 39 1 -0.4700 -5.8852 0.0187 40 1 -1.3952 -5.4029 -2.2195 41 1 -1.5634 -3.9033 -4.1336 42 1 -0.3540 -1.7652 -4.1668 43 1 1.0521 -1.0946 -2.2894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244585006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:34 Heat of formation + Delta-G solvation = -15.868570 kcal Electronic energy + Delta-G solvation = -25459.699573 eV Core-core repulsion = 22011.681998 eV Total energy + Delta-G solvation = -3448.017575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.15971 -39.92708 -37.67881 -37.36791 -35.38180 -34.13814 -33.11000 -31.79961 -31.26267 -29.79773 -27.88398 -27.24627 -26.45872 -23.84425 -23.16068 -22.96601 -22.25183 -20.92858 -19.33944 -18.30741 -17.82010 -17.74810 -16.86658 -16.79199 -16.55306 -16.10725 -15.78791 -15.08698 -14.89356 -14.85250 -14.59725 -14.26252 -14.22056 -14.03084 -13.96930 -13.59712 -13.49564 -13.28260 -13.00300 -12.90608 -12.71108 -12.60922 -12.42763 -12.13482 -12.05787 -11.89741 -11.69185 -11.37888 -11.23820 -10.91818 -10.89817 -10.32176 -9.73240 -9.45438 -9.24641 -8.68916 -8.43188 -6.31721 -0.08743 0.35627 0.46956 0.58992 1.33463 1.37262 1.49912 1.54591 2.16198 2.29297 2.69430 3.02523 3.60619 3.72588 3.81553 3.90456 3.99236 4.12056 4.17010 4.29394 4.32888 4.39344 4.41269 4.57647 4.62666 4.66543 4.74525 4.77396 4.79590 4.87045 4.93579 4.97817 5.06630 5.16856 5.21869 5.29174 5.34340 5.43526 5.57040 5.61482 5.68331 5.74195 5.76201 5.86436 5.98637 6.05726 6.07038 6.25243 6.43904 6.64633 6.85985 6.94161 6.97983 8.27976 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.004154 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.735721 B = 6739.565346 C = 8422.695941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 C -0.103 4.103 4 C -0.103 4.103 5 C 0.122 3.878 6 O -0.591 6.591 7 C -0.106 4.106 8 C -0.121 4.121 9 C -0.041 4.041 10 C -0.033 4.033 11 C -0.155 4.155 12 C 0.080 3.920 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.035 3.965 16 N -0.814 5.814 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.258 1.258 21 C -0.234 4.234 22 C -0.021 4.021 23 C -0.162 4.162 24 C -0.105 4.105 25 C -0.179 4.179 26 C -0.077 4.077 27 C -0.132 4.132 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.399 0.601 35 H 0.144 0.856 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 13.865 -6.078 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.103 4.103 5 C 0.045 3.955 6 O -0.401 6.401 7 C -0.123 4.123 8 C -0.139 4.139 9 C -0.042 4.042 10 C -0.034 4.034 11 C -0.174 4.174 12 C 0.077 3.923 13 C -0.517 4.517 14 H 0.096 0.904 15 C -0.181 4.181 16 N -0.439 5.439 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.255 4.255 22 C -0.021 4.021 23 C -0.180 4.180 24 C -0.123 4.123 25 C -0.197 4.197 26 C -0.094 4.094 27 C -0.132 4.132 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.148 13.237 -5.940 15.758 hybrid contribution 0.057 -0.795 0.773 1.110 sum 6.205 12.442 -5.168 14.833 Atomic orbital electron populations 1.20985 0.91052 1.03778 1.02167 1.20065 0.96387 0.92080 0.99614 1.21063 0.93814 0.97360 0.99812 1.19996 0.93677 0.95388 1.01270 1.21007 0.98825 0.91913 0.83735 1.86543 1.80730 1.45816 1.26971 1.21144 1.00647 0.91104 0.99450 1.21329 0.92836 0.98962 1.00784 1.18823 0.93350 0.91669 1.00313 1.19420 0.96995 0.93260 0.93685 1.21159 1.03593 0.94833 0.97827 1.17678 0.91004 0.90795 0.92796 1.19888 1.04119 1.17540 1.10202 0.90382 1.26749 0.93456 1.00393 0.97474 1.69908 1.01973 1.34291 1.37724 0.85227 0.79796 0.76831 0.78119 1.18604 1.19005 1.18143 1.21045 1.09721 1.00836 0.93876 1.18208 0.95502 0.93816 0.94579 1.21065 1.01410 1.00748 0.94779 1.20918 0.99298 0.94298 0.97744 1.20842 1.01124 0.98083 0.99692 1.20844 0.97925 0.98103 0.92575 1.18727 1.02525 0.96200 0.95778 0.92275 0.89271 0.91798 0.83830 0.90861 0.90817 0.75022 0.83835 0.86271 0.88176 0.90055 0.88320 0.87203 0.84360 0.84214 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 9.21 71.24 0.66 -3.31 16 2 C -0.08 -2.67 4.98 -19.63 -0.10 -2.77 16 3 C -0.10 -2.76 9.34 22.24 0.21 -2.55 16 4 C -0.10 -2.58 5.51 -19.82 -0.11 -2.68 16 5 C 0.12 2.06 7.16 71.24 0.51 2.57 16 6 O -0.59 -11.03 13.64 -148.98 -2.03 -13.07 16 7 C -0.11 -2.85 9.68 22.24 0.22 -2.64 16 8 C -0.12 -4.04 9.73 22.50 0.22 -3.82 16 9 C -0.04 -1.55 4.54 -20.05 -0.09 -1.65 16 10 C -0.03 -1.50 4.70 -18.90 -0.09 -1.59 16 11 C -0.16 -7.79 9.31 22.61 0.21 -7.58 16 12 C 0.08 4.39 5.55 -21.42 -0.12 4.27 16 13 C -0.49 -26.67 8.99 23.41 0.21 -26.46 16 14 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 15 C 0.04 1.80 5.09 85.25 0.43 2.23 16 16 N -0.81 -43.40 11.01 21.82 0.24 -43.16 16 17 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 C -0.23 -12.90 8.38 23.09 0.19 -12.70 16 22 C -0.02 -1.03 5.74 -21.33 -0.12 -1.15 16 23 C -0.16 -6.92 9.78 22.43 0.22 -6.70 16 24 C -0.10 -3.68 9.95 22.04 0.22 -3.46 16 25 C -0.18 -6.02 9.96 22.11 0.22 -5.80 16 26 C -0.08 -2.89 7.54 22.25 0.17 -2.72 16 27 C -0.13 -5.94 4.82 -19.89 -0.10 -6.04 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 30 H 0.06 2.38 4.35 -2.39 -0.01 2.37 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.40 3.03 9.12 -74.06 -0.68 2.35 16 35 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 39 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 40 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 43 H 0.12 4.15 6.39 -2.91 -0.02 4.13 16 Total: -1.00 -66.99 356.58 3.56 -63.42 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.36 Total: 36.74 kcal Atomic # 6 Polarization: -87.51 SS G_CDS: 2.96 Total: -84.55 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.24 Total: -43.16 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -2.03 Total: -13.07 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -66.99 3.56 -63.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244585006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.555 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds