Wall clock time and date at job start Tue Mar 31 2020 13:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35831 * 117.00337 * 2 1 4 4 C 1.38569 * 120.12049 * 88.92846 * 3 2 1 5 5 C 1.50697 * 119.96728 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.06862 * 180.02562 * 4 3 2 7 7 C 1.38421 * 120.33181 * 359.97438 * 6 4 3 8 8 C 1.37965 * 120.24790 * 0.02562 * 7 6 4 9 9 C 1.39422 * 119.92609 * 0.25842 * 8 7 6 10 10 C 1.48088 * 120.16544 * 179.70017 * 9 8 7 11 11 C 1.36712 * 120.34206 * 293.39393 * 10 9 8 12 12 C 1.41109 * 120.58520 * 179.84024 * 11 10 9 13 13 C 1.41220 * 119.48820 * 180.19321 * 12 11 10 14 14 H 1.07999 * 119.99489 * 26.34872 * 13 12 11 15 15 C 1.39911 * 119.99943 * 206.34750 * 13 12 11 16 16 N 1.30843 * 120.00266 * 17.79672 * 15 13 12 17 17 Si 1.86797 * 119.99976 * 197.79099 * 15 13 12 18 18 H 1.48498 * 109.47099 * 60.00558 * 17 15 13 19 19 H 1.48504 * 109.47345 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 300.00406 * 17 15 13 21 21 C 1.39972 * 121.02135 * 0.39619 * 12 11 10 22 22 C 1.39893 * 120.12379 * 359.84313 * 21 12 11 23 23 C 1.40853 * 121.14886 * 179.97438 * 22 21 12 24 24 C 1.36191 * 119.60941 * 180.02562 * 23 22 21 25 25 C 1.39244 * 120.93961 * 359.97438 * 24 23 22 26 26 C 1.36549 * 120.97861 * 0.02562 * 25 24 23 27 27 C 1.39800 * 119.73369 * 359.95609 * 26 25 24 28 28 H 1.09003 * 109.46671 * 304.07655 * 1 2 3 29 29 H 1.08997 * 109.46728 * 64.07596 * 1 2 3 30 30 H 1.08997 * 109.46877 * 184.07702 * 1 2 3 31 31 H 1.09000 * 109.46712 * 270.01831 * 5 4 3 32 32 H 1.09001 * 109.47016 * 30.01822 * 5 4 3 33 33 H 1.08996 * 109.47079 * 150.02136 * 5 4 3 34 34 H 1.08004 * 119.83677 * 179.97438 * 6 4 3 35 35 H 1.07998 * 119.87736 * 179.97438 * 7 6 4 36 36 H 1.08007 * 120.03845 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.70747 * 359.97438 * 11 10 9 38 38 H 0.97000 * 120.00044 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.93733 * 179.82191 * 21 12 11 40 40 H 1.08001 * 120.19246 * 0.03745 * 23 22 21 41 41 H 1.07991 * 119.53172 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.51025 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.13169 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2102 0.0000 4 6 2.3415 1.8400 1.1984 5 6 1.9780 1.1818 2.5044 6 6 2.9685 3.0714 1.1971 7 6 3.3053 3.6831 0.0020 8 6 3.0171 3.0682 -1.1989 9 6 2.3794 1.8284 -1.2101 10 6 2.0616 1.1666 -2.4962 11 6 1.1400 1.7134 -3.3451 12 6 0.8357 1.0889 -4.5733 13 6 -0.1171 1.6762 -5.4345 14 1 -0.2922 2.7414 -5.3998 15 6 -0.8341 0.8782 -6.3325 16 7 -0.8940 -0.4166 -6.1535 17 14 -1.7062 1.6611 -7.7871 18 1 -0.7132 2.3598 -8.6421 19 1 -2.3890 0.6078 -8.5805 20 1 -2.7102 2.6384 -7.2949 21 6 1.4606 -0.1058 -4.9494 22 6 2.4057 -0.6995 -4.1061 23 6 3.0471 -1.9017 -4.4628 24 6 3.9620 -2.4527 -3.6177 25 6 4.2736 -1.8442 -2.4046 26 6 3.6708 -0.6784 -2.0278 27 6 2.7266 -0.0826 -2.8691 28 1 -0.3633 0.5758 0.8513 29 1 -0.3633 0.4493 -0.9242 30 1 -0.3633 -1.0250 0.0731 31 1 0.9750 1.4897 2.7996 32 1 2.0053 0.0986 2.3853 33 1 2.6908 1.4809 3.2728 34 1 3.1969 3.5591 2.1333 35 1 3.7948 4.6458 0.0095 36 1 3.2811 3.5487 -2.1295 37 1 0.6420 2.6327 -3.0742 38 1 -1.3908 -0.9699 -6.7763 39 1 1.2123 -0.5703 -5.8924 40 1 2.8149 -2.3836 -5.4010 41 1 4.4527 -3.3747 -3.8922 42 1 5.0031 -2.3011 -1.7522 43 1 3.9231 -0.2180 -1.0840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245366326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:18 Heat of formation + Delta-G solvation = 14.258883 kcal Electronic energy + Delta-G solvation = -26154.003186 eV Core-core repulsion = 22707.292035 eV Total energy + Delta-G solvation = -3446.711151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.99678 -38.50664 -36.87662 -35.67542 -33.88923 -32.46061 -31.32284 -29.74658 -29.38991 -27.99769 -26.88008 -25.99895 -25.24898 -22.79838 -21.77531 -21.32482 -21.09232 -19.63557 -17.60632 -17.22828 -16.15010 -16.02657 -15.83463 -15.20496 -15.08507 -14.87558 -14.32400 -13.82239 -13.54114 -13.35525 -13.19679 -13.15630 -12.67530 -12.45757 -12.40672 -12.17932 -12.03769 -11.85891 -11.55906 -11.51553 -11.34160 -11.11812 -10.97422 -10.84840 -10.74368 -10.46285 -10.01953 -9.75393 -9.57001 -9.42832 -9.11207 -8.63772 -8.35547 -8.22207 -7.45381 -6.86051 -6.66232 -4.38768 1.38675 1.48221 1.85853 2.34919 2.97074 3.01621 3.04957 3.27943 3.73218 3.84722 4.05457 4.29728 4.83242 4.98507 5.00050 5.22326 5.38697 5.51205 5.59077 5.63901 5.66221 5.72052 5.75231 5.80914 5.84183 5.86819 5.96351 6.00612 6.08157 6.26587 6.30214 6.46337 6.59749 6.62739 6.67386 6.72691 6.80551 6.94005 6.99382 7.02698 7.08099 7.31776 7.44376 7.49240 7.57791 7.74926 7.90524 7.91736 8.09450 8.19467 8.52485 8.74245 8.81220 10.08368 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.004766 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.936496 B = 5873.406778 C = 6949.877416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.323 6.323 3 C 0.104 3.896 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.124 4.124 8 C -0.104 4.104 9 C -0.031 4.031 10 C -0.048 4.048 11 C -0.130 4.130 12 C 0.101 3.899 13 C -0.453 4.453 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.781 5.781 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.201 4.201 22 C 0.000 4.000 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.192 4.192 26 C -0.063 4.063 27 C -0.106 4.106 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.283 0.717 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 3.194 10.158 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.240 6.240 3 C 0.061 3.939 4 C -0.111 4.111 5 C -0.165 4.165 6 C -0.139 4.139 7 C -0.142 4.142 8 C -0.122 4.122 9 C -0.032 4.032 10 C -0.048 4.048 11 C -0.149 4.149 12 C 0.098 3.902 13 C -0.482 4.482 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.405 5.405 17 Si 0.731 3.269 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.222 4.222 22 C -0.001 4.001 23 C -0.159 4.159 24 C -0.136 4.136 25 C -0.210 4.210 26 C -0.081 4.081 27 C -0.107 4.107 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.339 2.798 10.063 10.965 hybrid contribution -0.676 0.408 -0.699 1.054 sum 2.663 3.206 9.363 10.249 Atomic orbital electron populations 1.22913 0.79149 1.02759 1.00599 1.85995 1.19507 1.24319 1.94146 1.18598 0.97947 0.86488 0.90912 1.20099 1.01077 0.95077 0.94865 1.20661 1.01097 1.01299 0.93473 1.20850 1.00320 0.94708 0.98008 1.21020 1.00933 0.99986 0.92266 1.21221 0.98367 0.94367 0.98268 1.19303 0.97709 0.93437 0.92734 1.19024 0.98713 0.94879 0.92168 1.21102 0.98868 1.00281 0.94621 1.17343 0.90901 0.92089 0.89825 1.19571 1.17435 0.95464 1.15721 0.90359 1.25885 0.95710 0.94610 0.98200 1.69833 1.31830 1.05635 1.33189 0.86380 0.79746 0.79763 0.80984 1.18704 1.20226 1.18995 1.21170 1.00108 1.00320 1.00569 1.17924 0.95366 0.93503 0.93258 1.20872 0.98908 0.96500 0.99606 1.20470 0.98841 0.99182 0.95059 1.20327 1.04283 0.98398 0.98041 1.20595 0.95113 0.94984 0.97371 1.18406 1.00905 0.95445 0.95897 0.94390 0.92899 0.89239 0.91749 0.90923 0.91796 0.86210 0.86079 0.85580 0.88261 0.90611 0.86174 0.87441 0.88263 0.88392 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 11.13 101.05 1.12 1.76 16 2 O -0.32 -5.87 8.26 -19.21 -0.16 -6.03 16 3 C 0.10 1.82 4.63 -38.83 -0.18 1.64 16 4 C -0.11 -1.61 5.89 -104.52 -0.62 -2.22 16 5 C -0.11 -1.26 9.79 36.00 0.35 -0.91 16 6 C -0.12 -1.57 9.69 -39.53 -0.38 -1.95 16 7 C -0.12 -1.66 10.03 -39.61 -0.40 -2.06 16 8 C -0.10 -1.69 9.75 -39.24 -0.38 -2.07 16 9 C -0.03 -0.59 4.51 -104.79 -0.47 -1.06 16 10 C -0.05 -1.04 5.02 -103.15 -0.52 -1.56 16 11 C -0.13 -3.01 9.33 -39.04 -0.36 -3.37 16 12 C 0.10 2.57 5.55 -107.03 -0.59 1.98 16 13 C -0.45 -11.42 8.99 -37.82 -0.34 -11.76 16 14 H 0.08 1.87 7.91 -52.49 -0.41 1.46 16 15 C 0.08 1.81 5.09 -17.35 -0.09 1.72 16 16 N -0.78 -19.60 11.01 55.55 0.61 -18.99 16 17 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 21 C -0.20 -5.19 8.38 -38.31 -0.32 -5.51 16 22 C 0.00 -0.01 5.74 -106.89 -0.61 -0.62 16 23 C -0.14 -3.07 9.78 -39.33 -0.38 -3.46 16 24 C -0.12 -2.31 9.95 -39.94 -0.40 -2.71 16 25 C -0.19 -3.79 9.96 -39.82 -0.40 -4.18 16 26 C -0.06 -1.32 8.77 -39.61 -0.35 -1.67 16 27 C -0.11 -2.44 5.75 -104.65 -0.60 -3.04 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 38 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 39 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 40 H 0.11 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.10 2.06 6.56 -52.49 -0.34 1.72 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -27.73 361.43 -10.73 -38.47 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.68 Total: 9.19 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -5.92 Total: -41.06 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.16 Total: -6.03 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.73 -10.73 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245366326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.724 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds