Wall clock time and date at job start Tue Mar 31 2020 13:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35831 * 117.00337 * 2 1 4 4 C 1.38569 * 120.12049 * 88.92846 * 3 2 1 5 5 C 1.50697 * 119.96728 * 359.97438 * 4 3 2 6 6 C 1.38187 * 120.06862 * 180.02562 * 4 3 2 7 7 C 1.38421 * 120.33181 * 359.97438 * 6 4 3 8 8 C 1.37965 * 120.24790 * 0.02562 * 7 6 4 9 9 C 1.39422 * 119.92609 * 0.25842 * 8 7 6 10 10 C 1.48088 * 120.16544 * 179.70017 * 9 8 7 11 11 C 1.36712 * 120.34206 * 293.39393 * 10 9 8 12 12 C 1.41109 * 120.58520 * 179.84024 * 11 10 9 13 13 C 1.41220 * 119.48820 * 180.19321 * 12 11 10 14 14 H 1.07999 * 119.99489 * 26.34872 * 13 12 11 15 15 C 1.39911 * 119.99943 * 206.34750 * 13 12 11 16 16 N 1.30843 * 120.00266 * 17.79672 * 15 13 12 17 17 Si 1.86797 * 119.99976 * 197.79099 * 15 13 12 18 18 H 1.48498 * 109.47099 * 60.00558 * 17 15 13 19 19 H 1.48504 * 109.47345 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 300.00406 * 17 15 13 21 21 C 1.39972 * 121.02135 * 0.39619 * 12 11 10 22 22 C 1.39893 * 120.12379 * 359.84313 * 21 12 11 23 23 C 1.40853 * 121.14886 * 179.97438 * 22 21 12 24 24 C 1.36191 * 119.60941 * 180.02562 * 23 22 21 25 25 C 1.39244 * 120.93961 * 359.97438 * 24 23 22 26 26 C 1.36549 * 120.97861 * 0.02562 * 25 24 23 27 27 C 1.39800 * 119.73369 * 359.95609 * 26 25 24 28 28 H 1.09003 * 109.46671 * 304.07655 * 1 2 3 29 29 H 1.08997 * 109.46728 * 64.07596 * 1 2 3 30 30 H 1.08997 * 109.46877 * 184.07702 * 1 2 3 31 31 H 1.09000 * 109.46712 * 270.01831 * 5 4 3 32 32 H 1.09001 * 109.47016 * 30.01822 * 5 4 3 33 33 H 1.08996 * 109.47079 * 150.02136 * 5 4 3 34 34 H 1.08004 * 119.83677 * 179.97438 * 6 4 3 35 35 H 1.07998 * 119.87736 * 179.97438 * 7 6 4 36 36 H 1.08007 * 120.03845 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.70747 * 359.97438 * 11 10 9 38 38 H 0.97000 * 120.00044 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.93733 * 179.82191 * 21 12 11 40 40 H 1.08001 * 120.19246 * 0.03745 * 23 22 21 41 41 H 1.07991 * 119.53172 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.51025 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.13169 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2102 0.0000 4 6 2.3415 1.8400 1.1984 5 6 1.9780 1.1818 2.5044 6 6 2.9685 3.0714 1.1971 7 6 3.3053 3.6831 0.0020 8 6 3.0171 3.0682 -1.1989 9 6 2.3794 1.8284 -1.2101 10 6 2.0616 1.1666 -2.4962 11 6 1.1400 1.7134 -3.3451 12 6 0.8357 1.0889 -4.5733 13 6 -0.1171 1.6762 -5.4345 14 1 -0.2922 2.7414 -5.3998 15 6 -0.8341 0.8782 -6.3325 16 7 -0.8940 -0.4166 -6.1535 17 14 -1.7062 1.6611 -7.7871 18 1 -0.7132 2.3598 -8.6421 19 1 -2.3890 0.6078 -8.5805 20 1 -2.7102 2.6384 -7.2949 21 6 1.4606 -0.1058 -4.9494 22 6 2.4057 -0.6995 -4.1061 23 6 3.0471 -1.9017 -4.4628 24 6 3.9620 -2.4527 -3.6177 25 6 4.2736 -1.8442 -2.4046 26 6 3.6708 -0.6784 -2.0278 27 6 2.7266 -0.0826 -2.8691 28 1 -0.3633 0.5758 0.8513 29 1 -0.3633 0.4493 -0.9242 30 1 -0.3633 -1.0250 0.0731 31 1 0.9750 1.4897 2.7996 32 1 2.0053 0.0986 2.3853 33 1 2.6908 1.4809 3.2728 34 1 3.1969 3.5591 2.1333 35 1 3.7948 4.6458 0.0095 36 1 3.2811 3.5487 -2.1295 37 1 0.6420 2.6327 -3.0742 38 1 -1.3908 -0.9699 -6.7763 39 1 1.2123 -0.5703 -5.8924 40 1 2.8149 -2.3836 -5.4010 41 1 4.4527 -3.3747 -3.8922 42 1 5.0031 -2.3011 -1.7522 43 1 3.9231 -0.2180 -1.0840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245366326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:17 Heat of formation + Delta-G solvation = 3.523725 kcal Electronic energy + Delta-G solvation = -26154.468697 eV Core-core repulsion = 22707.292035 eV Total energy + Delta-G solvation = -3447.176662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.33039 -40.12669 -38.12416 -37.41413 -35.50646 -33.94462 -32.71296 -31.39821 -30.94593 -29.52786 -28.12612 -27.20312 -27.02512 -24.32287 -23.34387 -22.95701 -22.41411 -21.21391 -19.27877 -18.52251 -17.80404 -17.70491 -17.13630 -16.72859 -16.43458 -16.35518 -15.89887 -15.19537 -14.93126 -14.74980 -14.63645 -14.28002 -14.19137 -14.05730 -14.00565 -13.69755 -13.35491 -13.20662 -12.98431 -12.86114 -12.73059 -12.62098 -12.50859 -12.36778 -12.09802 -12.08519 -11.69520 -11.42865 -11.29487 -10.93075 -10.78502 -10.33613 -9.57573 -9.45850 -9.24103 -8.67555 -8.41440 -6.31366 -0.06462 0.28679 0.40322 0.60234 1.34374 1.39204 1.47808 1.56007 2.16300 2.30269 2.53822 3.03785 3.07144 3.68856 3.78821 3.96380 4.10384 4.12600 4.28431 4.30958 4.33568 4.41887 4.42481 4.56320 4.59209 4.63723 4.72076 4.75813 4.79594 4.84727 4.89658 4.94978 4.98336 5.17372 5.20095 5.30593 5.31545 5.46988 5.50442 5.57949 5.63537 5.70940 5.74904 5.86233 5.89164 6.00618 6.07176 6.23945 6.44796 6.63830 6.65820 6.86369 6.95041 8.29204 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.004766 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.936496 B = 5873.406778 C = 6949.877416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.341 6.341 3 C 0.086 3.914 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.067 4.067 10 C -0.029 4.029 11 C -0.155 4.155 12 C 0.080 3.920 13 C -0.489 4.489 14 H 0.080 0.920 15 C 0.035 3.965 16 N -0.816 5.816 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.233 4.233 22 C -0.023 4.023 23 C -0.164 4.164 24 C -0.104 4.104 25 C -0.184 4.184 26 C -0.067 4.067 27 C -0.127 4.127 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.288 0.712 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 3.850 12.956 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.258 6.258 3 C 0.042 3.958 4 C -0.112 4.112 5 C -0.163 4.163 6 C -0.126 4.126 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.067 4.067 10 C -0.029 4.029 11 C -0.174 4.174 12 C 0.078 3.922 13 C -0.517 4.517 14 H 0.098 0.902 15 C -0.180 4.180 16 N -0.441 5.441 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.253 4.253 22 C -0.023 4.023 23 C -0.182 4.182 24 C -0.122 4.122 25 C -0.203 4.203 26 C -0.085 4.085 27 C -0.128 4.128 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.831 3.451 12.876 14.179 hybrid contribution -0.970 0.162 -1.355 1.674 sum 3.861 3.613 11.521 12.677 Atomic orbital electron populations 1.22957 0.78599 1.03747 1.00010 1.85953 1.20270 1.25321 1.94257 1.18796 0.98783 0.86630 0.91542 1.20458 1.00354 0.95555 0.94852 1.20717 1.02626 1.00431 0.92490 1.21349 0.98010 0.93754 0.99450 1.21396 0.99683 1.00925 0.91156 1.21314 0.98859 0.93653 0.99693 1.19297 1.00742 0.95011 0.91683 1.19330 0.96560 0.93952 0.93032 1.21135 1.00462 1.01007 0.94804 1.17668 0.91219 0.92464 0.90877 1.19839 1.18631 0.95789 1.17481 0.90235 1.26749 0.96038 0.94891 1.00365 1.69915 1.32812 1.07055 1.34336 0.85278 0.78543 0.78944 0.77148 1.18501 1.19234 1.18091 1.21042 1.02219 1.01387 1.00664 1.18226 0.95548 0.94671 0.93836 1.21047 1.00121 0.96318 1.00732 1.20885 0.97219 0.99916 0.94191 1.20802 1.03822 0.97433 0.98204 1.20741 0.94749 0.95627 0.97402 1.18761 1.01788 0.96287 0.95924 0.91644 0.96235 0.88019 0.90415 0.91984 0.89105 0.82103 0.82567 0.86036 0.87958 0.90110 0.88346 0.87097 0.84359 0.84658 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 11.13 113.37 1.26 2.58 16 2 O -0.34 -12.38 8.26 -91.65 -0.76 -13.14 16 3 C 0.09 2.93 4.63 22.76 0.11 3.04 16 4 C -0.11 -2.92 5.89 -19.80 -0.12 -3.03 16 5 C -0.11 -2.08 9.79 71.24 0.70 -1.38 16 6 C -0.11 -2.33 9.69 22.30 0.22 -2.11 16 7 C -0.11 -2.68 10.03 22.25 0.22 -2.46 16 8 C -0.12 -3.72 9.75 22.49 0.22 -3.50 16 9 C -0.07 -2.53 4.51 -19.97 -0.09 -2.62 16 10 C -0.03 -1.31 5.02 -18.91 -0.09 -1.41 16 11 C -0.16 -7.76 9.33 22.62 0.21 -7.55 16 12 C 0.08 4.42 5.55 -21.42 -0.12 4.30 16 13 C -0.49 -26.46 8.99 23.41 0.21 -26.24 16 14 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 15 C 0.04 1.80 5.09 85.25 0.43 2.23 16 16 N -0.82 -43.63 11.01 21.82 0.24 -43.39 16 17 Si 0.98 38.35 29.59 68.60 2.03 40.38 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 C -0.23 -13.01 8.38 23.09 0.19 -12.81 16 22 C -0.02 -1.16 5.74 -21.33 -0.12 -1.28 16 23 C -0.16 -7.34 9.78 22.43 0.22 -7.13 16 24 C -0.10 -3.94 9.95 22.03 0.22 -3.72 16 25 C -0.18 -6.85 9.96 22.12 0.22 -6.63 16 26 C -0.07 -2.80 8.77 22.25 0.20 -2.61 16 27 C -0.13 -6.07 5.75 -19.88 -0.11 -6.18 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.36 7.53 -2.39 -0.02 1.35 16 33 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 36 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 37 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 39 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 40 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.14 4.12 8.06 -2.92 -0.02 4.10 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.11 4.39 6.56 -2.91 -0.02 4.37 16 Total: -1.00 -65.84 361.43 6.49 -59.35 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 1.01 Total: 35.30 kcal Atomic # 6 Polarization: -82.47 SS G_CDS: 3.97 Total: -78.50 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.24 Total: -43.39 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.76 Total: -13.14 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -65.84 6.49 -59.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245366326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.873 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds