Wall clock time and date at job start Tue Mar 31 2020 12:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35809 * 117.00130 * 2 1 4 4 C 1.36269 * 119.64304 * 0.02562 * 3 2 1 5 5 C 1.40573 * 119.99583 * 179.97438 * 4 3 2 6 6 C 1.40511 * 120.99413 * 179.97438 * 5 4 3 7 7 C 1.36154 * 119.72982 * 180.02562 * 6 5 4 8 8 C 1.39373 * 121.01362 * 0.02562 * 7 6 5 9 9 C 1.36090 * 120.96561 * 359.97438 * 8 7 6 10 10 C 1.40689 * 119.67449 * 0.02562 * 9 8 7 11 11 C 1.40238 * 121.05931 * 179.71764 * 10 9 8 12 12 C 1.38544 * 119.52074 * 179.77171 * 11 10 9 13 13 C 1.47821 * 119.78040 * 180.24950 * 12 11 10 14 14 C 1.40044 * 119.88600 * 64.97901 * 13 12 11 15 15 C 1.36190 * 120.10879 * 179.75990 * 14 13 12 16 16 C 1.40976 * 119.88657 * 0.51585 * 15 14 13 17 17 C 1.40972 * 120.11166 * 179.71807 * 16 15 14 18 18 H 1.08006 * 120.00356 * 204.72210 * 17 16 15 19 19 C 1.40000 * 120.00331 * 24.71763 * 17 16 15 20 20 N 1.30807 * 119.99496 * 17.95209 * 19 17 16 21 21 Si 1.86796 * 120.00305 * 197.95214 * 19 17 16 22 22 H 1.48501 * 109.47037 * 60.00291 * 21 19 17 23 23 H 1.48500 * 109.47308 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47464 * 299.99788 * 21 19 17 25 25 C 1.40937 * 119.77976 * 359.74143 * 16 15 14 26 26 C 1.36222 * 119.88496 * 359.97438 * 25 16 15 27 27 C 1.50696 * 119.94582 * 179.97438 * 26 25 16 28 28 H 1.08994 * 109.47081 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46775 * 299.99835 * 1 2 3 31 31 H 1.08005 * 119.99792 * 359.94935 * 4 3 2 32 32 H 1.08003 * 120.13557 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.49265 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.51692 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.16155 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.23486 * 0.27612 * 11 10 9 37 37 H 1.07998 * 119.94351 * 0.02562 * 14 13 12 38 38 H 1.08005 * 120.05657 * 180.23929 * 15 14 13 39 39 H 0.97005 * 119.99625 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06454 * 180.02562 * 25 16 15 41 41 H 1.09006 * 109.47029 * 270.02176 * 27 26 25 42 42 H 1.09000 * 109.47456 * 30.02087 * 27 26 25 43 43 H 1.08999 * 109.47452 * 150.02187 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2964 2.3483 0.0005 5 6 1.9269 3.6047 0.0011 6 6 1.1748 4.7916 0.0011 7 6 1.8122 5.9948 0.0011 8 6 3.2039 6.0701 0.0006 9 6 3.9662 4.9428 0.0005 10 6 3.3438 3.6811 0.0005 11 6 4.1010 2.5007 -0.0054 12 6 3.4549 1.2752 -0.0005 13 6 4.2475 0.0274 -0.0011 14 6 5.0594 -0.2841 1.0966 15 6 5.7878 -1.4349 1.1029 16 6 5.7317 -2.3077 -0.0027 17 6 6.4883 -3.4973 -0.0037 18 1 6.7737 -3.9550 -0.9395 19 6 6.8698 -4.0853 1.2081 20 7 6.2551 -3.7587 2.3156 21 14 8.2565 -5.3363 1.2436 22 1 9.5043 -4.7064 0.7421 23 1 8.4649 -5.8050 2.6372 24 1 7.9034 -6.4915 0.3799 25 6 4.9172 -1.9870 -1.1073 26 6 4.1880 -0.8363 -1.1014 27 6 3.3171 -0.4917 -2.2820 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2182 2.2850 0.0001 32 1 0.0956 4.7498 0.0003 33 1 1.2304 6.9047 0.0015 34 1 3.6844 7.0374 0.0002 35 1 5.0438 5.0163 0.0005 36 1 5.1801 2.5468 -0.0056 37 1 5.1048 0.3873 1.9413 38 1 6.4107 -1.6762 1.9516 39 1 6.5197 -4.1659 3.1554 40 1 4.8705 -2.6526 -1.9565 41 1 3.8932 0.0914 -3.0006 42 1 2.9673 -1.4090 -2.7556 43 1 2.4609 0.0919 -1.9438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245415456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:09 Heat of formation + Delta-G solvation = 15.241242 kcal Electronic energy + Delta-G solvation = -25499.685531 eV Core-core repulsion = 22053.016978 eV Total energy + Delta-G solvation = -3446.668553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.43747 -38.63278 -37.71883 -35.33889 -33.89932 -32.37629 -31.29092 -30.79852 -29.04640 -28.38285 -27.15955 -25.78372 -25.21343 -22.69645 -22.34875 -21.62095 -20.38445 -19.89395 -18.08891 -16.97725 -16.82631 -16.55482 -15.63459 -15.27681 -14.95568 -14.85374 -14.38407 -13.96216 -13.78939 -13.53751 -13.26416 -13.13083 -12.90503 -12.66079 -12.51356 -12.06808 -11.95716 -11.66401 -11.59875 -11.57674 -11.38695 -11.13784 -10.94341 -10.82028 -10.79685 -10.47208 -10.32663 -10.11419 -9.67727 -9.58334 -9.39683 -9.11707 -7.94662 -7.52882 -7.40166 -7.08399 -6.80154 -4.36037 0.76874 1.29495 2.28246 2.70994 3.04147 3.05975 3.10827 3.14368 3.33033 3.56966 3.89339 4.35881 4.55808 4.79597 4.98674 5.08657 5.18281 5.22806 5.28160 5.34877 5.49266 5.53230 5.61058 5.66700 5.73327 5.91688 6.04571 6.10298 6.15280 6.22914 6.29792 6.39699 6.41366 6.50791 6.61063 6.67279 6.73244 6.84291 6.97357 7.02297 7.04073 7.13547 7.27495 7.38562 7.64598 7.71352 7.96151 8.05574 8.13748 8.28160 8.61744 8.85814 8.97510 10.12484 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.003305 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.045668 B = 8469.605993 C = 9127.296543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.292 6.292 3 C 0.151 3.849 4 C -0.230 4.230 5 C -0.025 4.025 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.139 4.139 9 C -0.094 4.094 10 C -0.071 4.071 11 C -0.090 4.090 12 C 0.005 3.995 13 C -0.196 4.196 14 C -0.074 4.074 15 C -0.173 4.173 16 C 0.121 3.879 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.785 5.785 21 Si 0.908 3.092 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.228 4.228 26 C -0.025 4.025 27 C -0.108 4.108 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.282 0.718 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 12.191 -2.731 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.105 3.895 4 C -0.249 4.249 5 C -0.025 4.025 6 C -0.135 4.135 7 C -0.139 4.139 8 C -0.157 4.157 9 C -0.112 4.112 10 C -0.072 4.072 11 C -0.108 4.108 12 C 0.004 3.996 13 C -0.197 4.197 14 C -0.093 4.093 15 C -0.192 4.192 16 C 0.119 3.881 17 C -0.486 4.486 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.409 5.409 21 Si 0.733 3.267 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.248 4.248 26 C -0.025 4.025 27 C -0.164 4.164 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.092 11.909 -2.469 14.608 hybrid contribution 0.216 -0.478 0.222 0.570 sum -7.876 11.431 -2.247 14.062 Atomic orbital electron populations 1.23038 0.79626 1.03706 1.00730 1.86308 1.20053 1.26549 1.87538 1.18954 0.92077 0.84032 0.94467 1.20805 0.99382 0.91508 1.13156 1.17728 0.92361 0.92911 0.99498 1.20884 0.99096 0.91844 1.01660 1.20724 0.94644 0.97411 1.01102 1.20689 0.93906 0.98200 1.02882 1.21034 0.99613 0.91588 0.98992 1.18042 0.92525 0.93746 1.02849 1.21366 0.99540 0.89776 1.00113 1.18382 0.88920 0.94260 0.98017 1.17672 1.07867 0.96224 0.97963 1.20388 0.96574 0.96867 0.95453 1.20928 1.03425 0.93985 1.00865 1.17633 0.88320 0.91581 0.90597 1.19565 1.28884 1.06924 0.93198 0.90364 1.25963 0.95982 0.97261 0.95085 1.69830 1.34147 1.36935 1.00010 0.86364 0.81705 0.80543 0.78125 1.18733 1.20293 1.18946 1.20498 1.04285 0.98801 1.01184 1.18984 0.96027 0.93875 0.93604 1.20768 0.98657 1.00577 0.96427 0.93077 0.88418 0.93029 0.85656 0.86371 0.86687 0.86596 0.85888 0.84928 0.89530 0.86539 0.90684 0.89018 0.93085 0.93002 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 101.05 0.99 1.29 16 2 O -0.29 -5.21 8.37 -19.14 -0.16 -5.37 16 3 C 0.15 2.69 5.22 -39.21 -0.20 2.48 16 4 C -0.23 -3.52 8.71 -39.41 -0.34 -3.86 16 5 C -0.02 -0.38 5.75 -106.76 -0.61 -0.99 16 6 C -0.12 -1.48 9.75 -39.47 -0.39 -1.86 16 7 C -0.12 -1.38 9.95 -39.91 -0.40 -1.78 16 8 C -0.14 -1.62 9.95 -39.93 -0.40 -2.02 16 9 C -0.09 -1.26 9.76 -39.43 -0.39 -1.64 16 10 C -0.07 -1.13 5.74 -106.82 -0.61 -1.74 16 11 C -0.09 -1.56 9.46 -38.72 -0.37 -1.93 16 12 C 0.00 0.09 4.61 -104.79 -0.48 -0.39 16 13 C -0.20 -4.40 4.92 -104.64 -0.52 -4.92 16 14 C -0.07 -1.76 9.65 -39.64 -0.38 -2.15 16 15 C -0.17 -4.48 8.63 -39.28 -0.34 -4.82 16 16 C 0.12 3.22 5.57 -106.80 -0.60 2.62 16 17 C -0.46 -12.00 9.03 -37.89 -0.34 -12.34 16 18 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 19 C 0.08 1.89 5.13 -17.33 -0.09 1.80 16 20 N -0.78 -20.11 10.96 55.55 0.61 -19.50 16 21 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.23 -5.64 9.36 -39.29 -0.37 -6.00 16 26 C -0.02 -0.56 5.62 -104.69 -0.59 -1.15 16 27 C -0.11 -2.05 9.41 36.00 0.34 -1.72 16 28 H 0.05 0.54 7.63 -51.93 -0.40 0.14 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.56 7.63 -51.93 -0.40 0.17 16 31 H 0.13 1.58 6.17 -52.48 -0.32 1.25 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.11 6.16 -52.48 -0.32 2.78 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.06 1.07 4.64 -51.93 -0.24 0.83 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -28.84 355.47 -10.76 -39.60 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.45 Total: 7.68 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: -6.08 Total: -41.13 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.61 Total: -19.50 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.16 Total: -5.37 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.84 -10.76 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245415456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.843 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds