Wall clock time and date at job start Tue Mar 31 2020 12:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35809 * 117.00130 * 2 1 4 4 C 1.36269 * 119.64304 * 0.02562 * 3 2 1 5 5 C 1.40573 * 119.99583 * 179.97438 * 4 3 2 6 6 C 1.40511 * 120.99413 * 179.97438 * 5 4 3 7 7 C 1.36154 * 119.72982 * 180.02562 * 6 5 4 8 8 C 1.39373 * 121.01362 * 0.02562 * 7 6 5 9 9 C 1.36090 * 120.96561 * 359.97438 * 8 7 6 10 10 C 1.40689 * 119.67449 * 0.02562 * 9 8 7 11 11 C 1.40238 * 121.05931 * 179.71764 * 10 9 8 12 12 C 1.38544 * 119.52074 * 179.77171 * 11 10 9 13 13 C 1.47821 * 119.78040 * 180.24950 * 12 11 10 14 14 C 1.40044 * 119.88600 * 64.97901 * 13 12 11 15 15 C 1.36190 * 120.10879 * 179.75990 * 14 13 12 16 16 C 1.40976 * 119.88657 * 0.51585 * 15 14 13 17 17 C 1.40972 * 120.11166 * 179.71807 * 16 15 14 18 18 H 1.08006 * 120.00356 * 204.72210 * 17 16 15 19 19 C 1.40000 * 120.00331 * 24.71763 * 17 16 15 20 20 N 1.30807 * 119.99496 * 17.95209 * 19 17 16 21 21 Si 1.86796 * 120.00305 * 197.95214 * 19 17 16 22 22 H 1.48501 * 109.47037 * 60.00291 * 21 19 17 23 23 H 1.48500 * 109.47308 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47464 * 299.99788 * 21 19 17 25 25 C 1.40937 * 119.77976 * 359.74143 * 16 15 14 26 26 C 1.36222 * 119.88496 * 359.97438 * 25 16 15 27 27 C 1.50696 * 119.94582 * 179.97438 * 26 25 16 28 28 H 1.08994 * 109.47081 * 59.99976 * 1 2 3 29 29 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46775 * 299.99835 * 1 2 3 31 31 H 1.08005 * 119.99792 * 359.94935 * 4 3 2 32 32 H 1.08003 * 120.13557 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.49265 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.51692 * 179.97438 * 8 7 6 35 35 H 1.08004 * 120.16155 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.23486 * 0.27612 * 11 10 9 37 37 H 1.07998 * 119.94351 * 0.02562 * 14 13 12 38 38 H 1.08005 * 120.05657 * 180.23929 * 15 14 13 39 39 H 0.97005 * 119.99625 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.06454 * 180.02562 * 25 16 15 41 41 H 1.09006 * 109.47029 * 270.02176 * 27 26 25 42 42 H 1.09000 * 109.47456 * 30.02087 * 27 26 25 43 43 H 1.08999 * 109.47452 * 150.02187 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2964 2.3483 0.0005 5 6 1.9269 3.6047 0.0011 6 6 1.1748 4.7916 0.0011 7 6 1.8122 5.9948 0.0011 8 6 3.2039 6.0701 0.0006 9 6 3.9662 4.9428 0.0005 10 6 3.3438 3.6811 0.0005 11 6 4.1010 2.5007 -0.0054 12 6 3.4549 1.2752 -0.0005 13 6 4.2475 0.0274 -0.0011 14 6 5.0594 -0.2841 1.0966 15 6 5.7878 -1.4349 1.1029 16 6 5.7317 -2.3077 -0.0027 17 6 6.4883 -3.4973 -0.0037 18 1 6.7737 -3.9550 -0.9395 19 6 6.8698 -4.0853 1.2081 20 7 6.2551 -3.7587 2.3156 21 14 8.2565 -5.3363 1.2436 22 1 9.5043 -4.7064 0.7421 23 1 8.4649 -5.8050 2.6372 24 1 7.9034 -6.4915 0.3799 25 6 4.9172 -1.9870 -1.1073 26 6 4.1880 -0.8363 -1.1014 27 6 3.3171 -0.4917 -2.2820 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2182 2.2850 0.0001 32 1 0.0956 4.7498 0.0003 33 1 1.2304 6.9047 0.0015 34 1 3.6844 7.0374 0.0002 35 1 5.0438 5.0163 0.0005 36 1 5.1801 2.5468 -0.0056 37 1 5.1048 0.3873 1.9413 38 1 6.4107 -1.6762 1.9516 39 1 6.5197 -4.1659 3.1554 40 1 4.8705 -2.6526 -1.9565 41 1 3.8932 0.0914 -3.0006 42 1 2.9673 -1.4090 -2.7556 43 1 2.4609 0.0919 -1.9438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245415456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:08 Heat of formation + Delta-G solvation = 3.387042 kcal Electronic energy + Delta-G solvation = -25500.199568 eV Core-core repulsion = 22053.016978 eV Total energy + Delta-G solvation = -3447.182589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63837 -39.81986 -39.40556 -36.66962 -35.58794 -33.54104 -33.05130 -32.31531 -30.42961 -29.64350 -28.18261 -27.55104 -26.85041 -24.04034 -23.51894 -22.75920 -22.14097 -21.64374 -19.21365 -18.83034 -18.00228 -17.86441 -17.11707 -16.72867 -16.13781 -15.97995 -15.58940 -15.47681 -15.42282 -15.09935 -14.44980 -14.30453 -14.21573 -14.09623 -13.91867 -13.72382 -13.43820 -13.25488 -13.05502 -12.76028 -12.71772 -12.54116 -12.51500 -12.32817 -12.15199 -11.90371 -11.73123 -11.41464 -11.28040 -11.17042 -10.97908 -10.73748 -9.44839 -9.21486 -8.81409 -8.64875 -8.60441 -6.32302 -0.35624 0.15134 0.92239 1.18181 1.20730 1.37011 1.48565 1.52869 2.11782 2.19520 2.46465 2.70010 3.23778 3.66888 3.76918 3.92554 4.08437 4.18083 4.24265 4.32458 4.35884 4.39825 4.41088 4.44648 4.48550 4.63458 4.69277 4.73600 4.82229 4.87512 4.96091 5.03523 5.08790 5.12993 5.16632 5.18602 5.31446 5.34450 5.51049 5.53508 5.67336 5.71275 5.76538 5.83418 6.04176 6.13316 6.14177 6.24775 6.38830 6.60337 6.69057 6.92145 7.05254 8.30322 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.003305 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.045668 B = 8469.605993 C = 9127.296543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.132 3.868 4 C -0.216 4.216 5 C -0.039 4.039 6 C -0.124 4.124 7 C -0.112 4.112 8 C -0.130 4.130 9 C -0.110 4.110 10 C -0.091 4.091 11 C -0.087 4.087 12 C -0.034 4.034 13 C -0.180 4.180 14 C -0.085 4.085 15 C -0.194 4.194 16 C 0.090 3.910 17 C -0.497 4.497 18 H 0.077 0.923 19 C 0.035 3.965 20 N -0.821 5.821 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.034 4.034 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 15.126 -3.281 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.086 3.914 4 C -0.235 4.235 5 C -0.039 4.039 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.148 4.148 9 C -0.128 4.128 10 C -0.091 4.091 11 C -0.105 4.105 12 C -0.035 4.035 13 C -0.181 4.181 14 C -0.104 4.104 15 C -0.214 4.214 16 C 0.087 3.913 17 C -0.525 4.525 18 H 0.095 0.905 19 C -0.180 4.180 20 N -0.446 5.446 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.265 4.265 26 C -0.034 4.034 27 C -0.156 4.156 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.890 14.862 -3.027 18.106 hybrid contribution 0.581 -1.011 0.373 1.224 sum -9.309 13.851 -2.654 16.898 Atomic orbital electron populations 1.23327 0.77146 1.05044 1.02325 1.86241 1.22814 1.27099 1.87963 1.18889 0.91459 0.84914 0.96098 1.21079 1.00619 0.90683 1.11121 1.18078 0.92410 0.94018 0.99401 1.21215 1.00492 0.91150 1.01279 1.21218 0.94828 0.98424 0.98498 1.21139 0.94316 0.98922 1.00416 1.21261 1.00692 0.91232 0.99626 1.18225 0.93154 0.93965 1.03749 1.21415 0.99642 0.90120 0.99327 1.18292 0.89968 0.93253 1.01942 1.18011 1.06240 0.97170 0.96695 1.20600 0.96808 0.96431 0.96528 1.20865 1.04648 0.95159 1.00698 1.17956 0.89459 0.92317 0.91523 1.19793 1.30933 1.07783 0.94027 0.90528 1.26828 0.97957 0.99100 0.94148 1.69891 1.35563 1.38407 1.00720 0.85233 0.77974 0.77772 0.78611 1.18413 1.19082 1.18235 1.20687 1.04795 0.99983 1.01024 1.19408 0.95789 0.93189 0.95005 1.20731 0.98408 1.01333 0.95130 0.91057 0.87417 0.91656 0.82809 0.83670 0.83129 0.83491 0.84680 0.85225 0.88545 0.88223 0.90031 0.88716 0.91763 0.92060 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.80 113.37 1.11 1.48 16 2 O -0.33 -11.60 8.37 -91.41 -0.76 -12.37 16 3 C 0.13 4.64 5.22 22.51 0.12 4.75 16 4 C -0.22 -6.15 8.71 22.38 0.20 -5.96 16 5 C -0.04 -1.08 5.75 -21.25 -0.12 -1.21 16 6 C -0.12 -2.58 9.75 22.34 0.22 -2.36 16 7 C -0.11 -1.99 9.95 22.06 0.22 -1.77 16 8 C -0.13 -2.47 9.95 22.04 0.22 -2.26 16 9 C -0.11 -2.66 9.76 22.37 0.22 -2.44 16 10 C -0.09 -2.73 5.74 -21.29 -0.12 -2.86 16 11 C -0.09 -3.04 9.46 22.83 0.22 -2.83 16 12 C -0.03 -1.35 4.61 -19.97 -0.09 -1.44 16 13 C -0.18 -8.40 4.92 -19.87 -0.10 -8.50 16 14 C -0.09 -4.29 9.65 22.23 0.21 -4.08 16 15 C -0.19 -10.80 8.63 22.46 0.19 -10.61 16 16 C 0.09 5.08 5.57 -21.28 -0.12 4.96 16 17 C -0.50 -27.65 9.03 23.37 0.21 -27.44 16 18 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 19 C 0.04 1.82 5.13 85.27 0.44 2.26 16 20 N -0.82 -44.20 10.96 21.84 0.24 -43.96 16 21 Si 0.98 38.88 29.60 68.60 2.03 40.91 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.25 -12.78 9.36 22.46 0.21 -12.57 16 26 C -0.03 -1.59 5.62 -19.91 -0.11 -1.70 16 27 C -0.10 -3.80 9.41 71.23 0.67 -3.13 16 28 H 0.07 1.32 7.63 -2.39 -0.02 1.30 16 29 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.29 7.63 -2.38 -0.02 1.27 16 31 H 0.15 3.33 6.17 -2.91 -0.02 3.31 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 39 H 0.29 14.05 8.30 -92.70 -0.77 13.28 16 40 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 43 H 0.07 2.46 4.64 -2.39 -0.01 2.45 16 Total: -1.00 -67.12 355.47 6.31 -60.81 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 1.02 Total: 32.28 kcal Atomic # 6 Polarization: -81.47 SS G_CDS: 3.79 Total: -77.68 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.24 Total: -43.96 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.76 Total: -12.37 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -67.12 6.31 -60.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245415456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.195 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds