Wall clock time and date at job start Tue Mar 31 2020 13:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47201 * 2 1 4 4 C 1.52995 * 110.53655 * 66.37321 * 3 2 1 5 5 N 1.47311 * 110.59778 * 303.54386 * 3 2 1 6 6 C 1.34520 * 106.61997 * 241.32134 * 5 3 2 7 7 O 1.21539 * 123.77328 * 179.97438 * 6 5 3 8 8 N 1.33789 * 112.45758 * 359.97438 * 6 5 3 9 9 C 1.46506 * 124.17929 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47327 * 90.02072 * 9 8 6 11 11 C 1.38323 * 119.96778 * 270.23416 * 10 9 8 12 12 C 1.38282 * 120.13831 * 180.27620 * 11 10 9 13 13 C 1.38117 * 120.06673 * 359.77121 * 12 11 10 14 14 C 1.38851 * 119.93517 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.07344 * 180.02562 * 14 13 12 16 16 C 1.34829 * 116.99785 * 354.43784 * 15 14 13 17 17 H 1.07996 * 119.99911 * 5.06109 * 16 15 14 18 18 C 1.38650 * 119.99998 * 185.05169 * 16 15 14 19 19 N 1.31556 * 120.00413 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47305 * 60.00357 * 20 18 16 22 22 H 1.48505 * 109.47397 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47219 * 300.00422 * 20 18 16 24 24 C 1.38075 * 119.96151 * 90.00024 * 10 9 8 25 25 C 1.34765 * 111.64556 * 0.23068 * 8 6 5 26 26 O 1.21236 * 127.15779 * 179.74008 * 25 8 6 27 27 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 300.00543 * 1 2 3 29 29 H 1.09007 * 109.47168 * 59.99953 * 1 2 3 30 30 H 1.08995 * 109.47263 * 240.00004 * 2 1 3 31 31 H 1.08999 * 109.46736 * 119.99550 * 2 1 3 32 32 H 1.08999 * 109.47161 * 297.87613 * 4 3 2 33 33 H 1.09002 * 109.47178 * 57.86571 * 4 3 2 34 34 H 1.08999 * 109.47666 * 177.87339 * 4 3 2 35 35 H 0.97001 * 126.68789 * 61.28179 * 5 3 2 36 36 H 1.08999 * 109.46984 * 330.01970 * 9 8 6 37 37 H 1.08998 * 109.46824 * 210.02524 * 9 8 6 38 38 H 1.07998 * 119.92874 * 0.04920 * 11 10 9 39 39 H 1.07995 * 119.96449 * 179.74551 * 12 11 10 40 40 H 1.08002 * 120.03377 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00413 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.03862 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6776 2.1400 1.3126 5 7 1.4944 2.1851 -1.1493 6 6 2.5469 2.5708 -1.8930 7 8 2.4491 3.2091 -2.9226 8 7 3.7135 2.1731 -1.3726 9 6 5.0205 2.4528 -1.9726 10 6 5.5504 3.7577 -1.4367 11 6 5.2522 4.9429 -2.0847 12 6 5.7414 6.1417 -1.5992 13 6 6.5256 6.1596 -0.4624 14 6 6.8224 4.9722 0.1934 15 8 7.5925 4.9865 1.3112 16 6 8.1326 6.1695 1.6672 17 1 7.8793 7.0653 1.1198 18 6 9.0132 6.2359 2.7361 19 7 9.3221 5.1446 3.4028 20 14 9.7610 7.8749 3.2298 21 1 8.6783 8.8223 3.5976 22 1 10.6628 7.6774 4.3930 23 1 10.5369 8.4281 2.0909 24 6 6.3291 3.7696 -0.2965 25 6 3.5377 1.4786 -0.2311 26 8 4.3984 0.9860 0.4664 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5932 2.1813 1.4147 33 1 2.1001 1.5828 2.1488 34 1 2.0811 3.1525 1.3097 35 1 0.5586 2.3612 -1.3341 36 1 4.9161 2.5204 -3.0555 37 1 5.7138 1.6494 -1.7239 38 1 4.6392 4.9314 -2.9737 39 1 5.5102 7.0649 -2.1097 40 1 6.9077 7.0962 -0.0839 41 1 9.9384 5.1910 4.1504 42 1 6.5581 2.8444 0.2114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255832695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:31 Heat of formation + Delta-G solvation = -47.250529 kcal Electronic energy + Delta-G solvation = -26859.922324 eV Core-core repulsion = 22999.694661 eV Total energy + Delta-G solvation = -3860.227662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.58204 -39.06260 -38.57258 -37.27324 -36.52409 -35.27901 -32.88872 -32.26663 -30.86550 -29.79777 -29.10966 -26.78396 -25.52160 -25.07753 -23.47647 -21.91318 -21.39661 -20.74257 -20.21536 -18.01562 -17.70735 -17.08192 -16.65090 -16.39829 -15.66221 -15.45924 -15.16355 -14.99482 -14.58805 -14.48572 -14.28869 -14.11943 -13.66028 -13.56225 -13.26393 -12.92769 -12.71680 -12.57601 -12.49170 -12.32335 -11.95285 -11.73362 -11.58502 -11.36469 -11.32382 -11.03041 -10.93828 -10.70978 -10.60124 -10.49248 -10.06462 -9.74563 -9.56738 -9.30890 -8.83629 -8.18657 -7.25063 -6.43460 -4.03079 1.64684 1.78712 2.33406 2.51851 3.02851 3.06229 3.13530 3.15063 3.17430 3.82488 3.96972 4.20351 4.41656 4.55588 4.84639 4.89688 4.93612 5.05212 5.12148 5.15877 5.25642 5.40724 5.43660 5.51894 5.55258 5.57426 5.63077 5.73438 5.78883 5.82768 5.90196 5.99229 6.16202 6.34288 6.61103 6.67262 6.88232 7.05630 7.06796 7.27307 7.34936 7.40515 7.43495 7.78317 8.00550 8.12344 9.01513 9.71640 10.74328 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.003414 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.287558 B = 8199.740575 C = 9022.142025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.121 3.879 4 C -0.149 4.149 5 N -0.723 5.723 6 C 0.705 3.295 7 O -0.542 6.542 8 N -0.568 5.568 9 C 0.166 3.834 10 C -0.084 4.084 11 C -0.185 4.185 12 C -0.079 4.079 13 C -0.224 4.224 14 C 0.148 3.852 15 O -0.177 6.177 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.166 4.166 25 C 0.528 3.472 26 O -0.453 6.453 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.435 0.565 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.923 -8.339 -6.951 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.030 3.970 4 C -0.207 4.207 5 N -0.388 5.388 6 C 0.406 3.594 7 O -0.416 6.416 8 N -0.314 5.314 9 C 0.046 3.954 10 C -0.085 4.085 11 C -0.204 4.204 12 C -0.098 4.098 13 C -0.243 4.243 14 C 0.095 3.905 15 O -0.080 6.080 16 C -0.470 4.470 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.186 4.186 25 C 0.313 3.687 26 O -0.321 6.321 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.280 0.720 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.146 -8.515 -6.784 19.473 hybrid contribution 0.007 1.117 0.172 1.130 sum -16.138 -7.398 -6.612 18.944 Atomic orbital electron populations 1.21776 0.94225 1.02621 1.02270 1.21717 0.97339 0.92267 1.04157 1.21502 0.91052 0.95025 0.89407 1.22020 1.03053 1.01598 0.94004 1.45669 1.08559 1.59085 1.25467 1.15871 0.80890 0.79341 0.83303 1.90987 1.85046 1.42211 1.23327 1.46507 1.08560 1.51153 1.25158 1.20547 0.80281 0.96229 0.98364 1.19376 0.99077 0.93886 0.96161 1.20563 1.05491 0.91983 1.02381 1.20745 0.96489 0.97051 0.95484 1.21243 1.05358 0.98645 0.99084 1.19297 0.91138 0.92986 0.87085 1.83991 1.55386 1.34347 1.34300 1.21267 1.25565 0.84588 1.15548 0.89184 1.25278 0.96266 0.99195 0.95702 1.70033 1.32680 1.27531 1.19388 0.85794 0.79032 0.80163 0.78508 1.19530 1.20257 1.19499 1.20131 1.03905 0.96617 0.97949 1.20750 0.90799 0.77032 0.80093 1.90829 1.49199 1.44018 1.48079 0.91745 0.91821 0.92474 0.90947 0.89178 0.90304 0.89669 0.91065 0.72021 0.88069 0.88209 0.87002 0.87305 0.85500 0.91961 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.50 37.16 0.35 -0.41 16 2 C -0.12 -0.85 5.27 -26.73 -0.14 -0.99 16 3 C 0.12 1.19 1.01 -132.09 -0.13 1.05 16 4 C -0.15 -1.33 8.71 37.16 0.32 -1.01 16 5 N -0.72 -7.08 5.42 -52.94 -0.29 -7.36 16 6 C 0.71 9.77 8.62 -88.03 -0.76 9.01 16 7 O -0.54 -9.00 17.48 5.33 0.09 -8.91 16 8 N -0.57 -8.22 2.59 -122.02 -0.32 -8.54 16 9 C 0.17 2.51 5.82 -5.19 -0.03 2.48 16 10 C -0.08 -1.56 5.46 -104.65 -0.57 -2.13 16 11 C -0.18 -3.42 9.70 -39.53 -0.38 -3.80 16 12 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 13 C -0.22 -4.98 9.17 -39.40 -0.36 -5.34 16 14 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 15 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 16 C -0.39 -11.14 9.49 30.88 0.29 -10.84 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 20 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.17 -3.65 9.65 -39.39 -0.38 -4.03 16 25 C 0.53 7.41 6.98 -10.56 -0.07 7.33 16 26 O -0.45 -7.68 17.75 5.60 0.10 -7.58 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 6.75 -51.93 -0.35 -0.07 16 29 H 0.06 0.27 7.04 -51.93 -0.37 -0.10 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.49 6.81 -51.93 -0.35 0.14 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.44 3.10 8.12 -40.82 -0.33 2.77 16 36 H 0.10 1.38 7.80 -51.93 -0.41 0.97 16 37 H 0.10 1.41 7.94 -51.93 -0.41 1.00 16 38 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.12 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -34.14 357.58 -7.21 -41.35 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.30 Total: 6.09 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.62 Total: -6.18 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.16 Total: -40.68 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.19 Total: -21.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.14 -7.21 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255832695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.900 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds