Wall clock time and date at job start Tue Mar 31 2020 13:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47201 * 2 1 4 4 C 1.52995 * 110.53655 * 66.37321 * 3 2 1 5 5 N 1.47311 * 110.59778 * 303.54386 * 3 2 1 6 6 C 1.34520 * 106.61997 * 241.32134 * 5 3 2 7 7 O 1.21539 * 123.77328 * 179.97438 * 6 5 3 8 8 N 1.33789 * 112.45758 * 359.97438 * 6 5 3 9 9 C 1.46506 * 124.17929 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47327 * 90.02072 * 9 8 6 11 11 C 1.38323 * 119.96778 * 270.23416 * 10 9 8 12 12 C 1.38282 * 120.13831 * 180.27620 * 11 10 9 13 13 C 1.38117 * 120.06673 * 359.77121 * 12 11 10 14 14 C 1.38851 * 119.93517 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.07344 * 180.02562 * 14 13 12 16 16 C 1.34829 * 116.99785 * 354.43784 * 15 14 13 17 17 H 1.07996 * 119.99911 * 5.06109 * 16 15 14 18 18 C 1.38650 * 119.99998 * 185.05169 * 16 15 14 19 19 N 1.31556 * 120.00413 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47305 * 60.00357 * 20 18 16 22 22 H 1.48505 * 109.47397 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47219 * 300.00422 * 20 18 16 24 24 C 1.38075 * 119.96151 * 90.00024 * 10 9 8 25 25 C 1.34765 * 111.64556 * 0.23068 * 8 6 5 26 26 O 1.21236 * 127.15779 * 179.74008 * 25 8 6 27 27 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47355 * 300.00543 * 1 2 3 29 29 H 1.09007 * 109.47168 * 59.99953 * 1 2 3 30 30 H 1.08995 * 109.47263 * 240.00004 * 2 1 3 31 31 H 1.08999 * 109.46736 * 119.99550 * 2 1 3 32 32 H 1.08999 * 109.47161 * 297.87613 * 4 3 2 33 33 H 1.09002 * 109.47178 * 57.86571 * 4 3 2 34 34 H 1.08999 * 109.47666 * 177.87339 * 4 3 2 35 35 H 0.97001 * 126.68789 * 61.28179 * 5 3 2 36 36 H 1.08999 * 109.46984 * 330.01970 * 9 8 6 37 37 H 1.08998 * 109.46824 * 210.02524 * 9 8 6 38 38 H 1.07998 * 119.92874 * 0.04920 * 11 10 9 39 39 H 1.07995 * 119.96449 * 179.74551 * 12 11 10 40 40 H 1.08002 * 120.03377 * 179.97438 * 13 12 11 41 41 H 0.97001 * 120.00413 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.03862 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6776 2.1400 1.3126 5 7 1.4944 2.1851 -1.1493 6 6 2.5469 2.5708 -1.8930 7 8 2.4491 3.2091 -2.9226 8 7 3.7135 2.1731 -1.3726 9 6 5.0205 2.4528 -1.9726 10 6 5.5504 3.7577 -1.4367 11 6 5.2522 4.9429 -2.0847 12 6 5.7414 6.1417 -1.5992 13 6 6.5256 6.1596 -0.4624 14 6 6.8224 4.9722 0.1934 15 8 7.5925 4.9865 1.3112 16 6 8.1326 6.1695 1.6672 17 1 7.8793 7.0653 1.1198 18 6 9.0132 6.2359 2.7361 19 7 9.3221 5.1446 3.4028 20 14 9.7610 7.8749 3.2298 21 1 8.6783 8.8223 3.5976 22 1 10.6628 7.6774 4.3930 23 1 10.5369 8.4281 2.0909 24 6 6.3291 3.7696 -0.2965 25 6 3.5377 1.4786 -0.2311 26 8 4.3984 0.9860 0.4664 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5932 2.1813 1.4147 33 1 2.1001 1.5828 2.1488 34 1 2.0811 3.1525 1.3097 35 1 0.5586 2.3612 -1.3341 36 1 4.9161 2.5204 -3.0555 37 1 5.7138 1.6494 -1.7239 38 1 4.6392 4.9314 -2.9737 39 1 5.5102 7.0649 -2.1097 40 1 6.9077 7.0962 -0.0839 41 1 9.9384 5.1910 4.1504 42 1 6.5581 2.8444 0.2114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255832695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:30 Heat of formation + Delta-G solvation = -70.335787 kcal Electronic energy + Delta-G solvation = -26860.923376 eV Core-core repulsion = 22999.694661 eV Total energy + Delta-G solvation = -3861.228714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64948 -40.84940 -39.74780 -38.68981 -37.86511 -36.51229 -34.35166 -33.77363 -32.27142 -30.85838 -30.49970 -28.16591 -27.26890 -26.19345 -24.46112 -23.40316 -22.98857 -21.75175 -21.45014 -19.61724 -19.11133 -18.77759 -17.84474 -17.44565 -16.83140 -16.66059 -16.61162 -16.34898 -16.15010 -15.94312 -15.53367 -15.36059 -15.27880 -14.92346 -14.50245 -14.22472 -13.96952 -13.66846 -13.63093 -13.18807 -13.15455 -13.08311 -13.00133 -12.71370 -12.56052 -12.32779 -12.31635 -12.16886 -11.89239 -11.83540 -11.35126 -11.15430 -10.90806 -10.82534 -10.48554 -9.83922 -9.08954 -8.48585 -6.18247 0.24582 0.54864 0.64094 1.29881 1.33803 1.45541 1.50544 1.92182 2.10063 2.16255 2.76433 2.87250 3.11367 3.34218 3.45866 3.66667 3.78510 3.91264 4.08282 4.24975 4.31287 4.32655 4.35972 4.44472 4.50682 4.55702 4.59957 4.65425 4.75162 4.81435 4.93834 5.01999 5.08215 5.09963 5.18861 5.19649 5.42759 5.55732 5.63390 5.64789 5.80866 5.98538 6.00846 6.10319 6.33135 6.95014 7.09188 7.74571 8.74324 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.003414 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.287558 B = 8199.740575 C = 9022.142025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.131 3.869 4 C -0.148 4.148 5 N -0.698 5.698 6 C 0.702 3.298 7 O -0.569 6.569 8 N -0.574 5.574 9 C 0.165 3.835 10 C -0.073 4.073 11 C -0.166 4.166 12 C -0.072 4.072 13 C -0.231 4.231 14 C 0.113 3.887 15 O -0.231 6.231 16 C -0.417 4.417 17 H 0.103 0.897 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.020 2.980 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.179 4.179 25 C 0.516 3.484 26 O -0.491 6.491 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.451 0.549 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.273 0.727 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 -7.493 -8.617 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.040 3.960 4 C -0.206 4.206 5 N -0.364 5.364 6 C 0.403 3.597 7 O -0.445 6.445 8 N -0.319 5.319 9 C 0.044 3.956 10 C -0.074 4.074 11 C -0.185 4.185 12 C -0.090 4.090 13 C -0.251 4.251 14 C 0.062 3.938 15 O -0.137 6.137 16 C -0.493 4.493 17 H 0.120 0.880 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.839 3.161 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.181 1.181 24 C -0.199 4.199 25 C 0.304 3.696 26 O -0.362 6.362 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.299 0.701 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.972 -7.681 -8.488 22.158 hybrid contribution 0.662 0.730 0.462 1.089 sum -18.310 -6.951 -8.026 21.165 Atomic orbital electron populations 1.21788 0.91875 1.03687 1.03177 1.21752 0.99192 0.89892 1.04214 1.21583 0.87827 0.96936 0.89605 1.22069 1.05318 0.99919 0.93248 1.45559 1.08585 1.57858 1.24427 1.15959 0.81242 0.79244 0.83261 1.90967 1.85390 1.43603 1.24494 1.46551 1.08601 1.51268 1.25491 1.20561 0.81050 0.94471 0.99496 1.19717 0.97235 0.96035 0.94385 1.20964 1.03883 0.91376 1.02298 1.21152 0.94688 0.99059 0.94062 1.21361 1.06077 0.97564 1.00079 1.19818 0.91763 0.94957 0.87221 1.83960 1.57764 1.35180 1.36843 1.21812 1.26174 0.85057 1.16279 0.87968 1.26627 0.96387 1.03680 0.95259 1.70191 1.34426 1.30509 1.20665 0.84638 0.78339 0.74716 0.78450 1.18032 1.19576 1.18099 1.20203 1.05067 0.95292 0.99294 1.21554 0.92621 0.76033 0.79360 1.90812 1.50818 1.45496 1.49048 0.90712 0.90692 0.91746 0.91240 0.88980 0.86654 0.89730 0.93421 0.70075 0.85761 0.87796 0.84302 0.83384 0.85782 0.91770 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.50 71.98 0.68 -0.28 16 2 C -0.11 -1.38 5.27 30.60 0.16 -1.22 16 3 C 0.13 2.34 1.01 2.98 0.00 2.34 16 4 C -0.15 -2.39 8.71 71.98 0.63 -1.76 16 5 N -0.70 -11.86 5.42 -439.83 -2.38 -14.24 16 6 C 0.70 17.98 8.62 179.44 1.55 19.53 16 7 O -0.57 -17.41 17.48 -3.84 -0.07 -17.47 16 8 N -0.57 -16.03 2.59 -777.22 -2.01 -18.04 16 9 C 0.16 4.82 5.82 85.63 0.50 5.32 16 10 C -0.07 -2.66 5.46 -19.88 -0.11 -2.77 16 11 C -0.17 -5.72 9.70 22.30 0.22 -5.50 16 12 C -0.07 -2.59 10.04 22.25 0.22 -2.36 16 13 C -0.23 -10.36 9.17 22.39 0.21 -10.16 16 14 C 0.11 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.35 9.76 -22.73 -0.22 -14.57 16 16 C -0.42 -24.76 9.49 67.92 0.64 -24.11 16 17 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 19 N -0.92 -57.50 13.67 21.61 0.30 -57.20 16 20 Si 1.02 43.26 29.55 68.60 2.03 45.29 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 C -0.18 -8.19 9.65 22.39 0.22 -7.97 16 25 C 0.52 14.40 6.98 87.94 0.61 15.01 16 26 O -0.49 -17.24 17.75 -2.89 -0.05 -17.29 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.35 6.75 -2.39 -0.02 0.33 16 29 H 0.06 0.34 7.04 -2.38 -0.02 0.33 16 30 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 1.02 6.81 -2.39 -0.02 1.01 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.45 4.85 8.12 -92.71 -0.75 4.10 16 36 H 0.12 3.08 7.80 -2.39 -0.02 3.06 16 37 H 0.10 2.95 7.94 -2.39 -0.02 2.94 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -79.84 357.58 4.05 -75.79 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.31 Total: 26.46 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.15 Total: -8.72 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.10 Total: -89.48 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.34 Total: -49.33 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -79.84 4.05 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255832695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.454 kcal (2) G-P(sol) polarization free energy of solvation -79.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds