Wall clock time and date at job start Tue Mar 31 2020 13:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.53004 * 110.53549 * 302.82687 * 3 2 1 5 5 N 1.47314 * 110.60097 * 65.82090 * 3 2 1 6 6 C 1.34528 * 106.61500 * 118.52523 * 5 3 2 7 7 O 1.21545 * 123.77067 * 179.97438 * 6 5 3 8 8 N 1.33787 * 112.45957 * 0.02562 * 6 5 3 9 9 C 1.46504 * 124.17608 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47064 * 269.95410 * 9 8 6 11 11 C 1.38329 * 119.96746 * 269.72562 * 10 9 8 12 12 C 1.38279 * 120.13858 * 179.76601 * 11 10 9 13 13 C 1.38129 * 120.06788 * 0.51177 * 12 11 10 14 14 C 1.38856 * 119.93014 * 359.74593 * 13 12 11 15 15 O 1.35748 * 120.06810 * 179.97438 * 14 13 12 16 16 C 1.34833 * 117.00295 * 354.48801 * 15 14 13 17 17 H 1.07998 * 119.99454 * 5.05580 * 16 15 14 18 18 C 1.38647 * 120.00497 * 185.05793 * 16 15 14 19 19 N 1.31561 * 119.99662 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00486 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46896 * 89.99857 * 20 18 16 22 22 H 1.48502 * 109.47189 * 210.00123 * 20 18 16 23 23 H 1.48502 * 109.46816 * 330.00081 * 20 18 16 24 24 C 1.38076 * 119.96450 * 90.00416 * 10 9 8 25 25 C 1.34763 * 111.64868 * 359.97438 * 8 6 5 26 26 O 1.21235 * 127.16510 * 179.97438 * 25 8 6 27 27 H 1.09005 * 109.47063 * 60.00190 * 1 2 3 28 28 H 1.09000 * 109.46887 * 300.00282 * 1 2 3 29 29 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47063 * 119.99810 * 2 1 3 31 31 H 1.09000 * 109.46887 * 239.99718 * 2 1 3 32 32 H 1.09004 * 109.47032 * 60.00389 * 4 3 2 33 33 H 1.09001 * 109.47023 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47228 * 300.00066 * 4 3 2 35 35 H 0.96995 * 126.69494 * 298.51092 * 5 3 2 36 36 H 1.08997 * 109.47265 * 29.95755 * 9 8 6 37 37 H 1.09008 * 109.47177 * 149.96095 * 9 8 6 38 38 H 1.07993 * 119.92907 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.96779 * 180.25564 * 12 11 10 40 40 H 1.07997 * 120.03138 * 179.76957 * 13 12 11 41 41 H 0.97001 * 119.99980 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.03872 * 359.94941 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4866 2.2074 -1.2040 5 7 1.6803 2.1194 1.2580 6 6 2.8363 2.4654 1.8528 7 8 2.9003 3.0466 2.9183 8 7 3.9075 2.0994 1.1398 9 6 5.2923 2.3482 1.5484 10 6 5.7431 3.6815 1.0098 11 6 6.3456 3.7567 -0.2330 12 6 6.7563 4.9789 -0.7327 13 6 6.5753 6.1275 0.0129 14 6 5.9756 6.0546 1.2631 15 8 5.7968 7.1816 1.9985 16 6 6.3253 8.3217 1.5098 17 1 6.7904 8.3268 0.5351 18 6 6.2715 9.4875 2.2584 19 7 5.7044 9.4813 3.4455 20 14 7.0043 11.0668 1.5816 21 1 5.9679 11.8050 0.8161 22 1 7.4849 11.9107 2.7051 23 1 8.1427 10.7401 0.6857 24 6 5.5594 4.8260 1.7600 25 6 3.5556 1.4725 -0.0001 26 8 4.2967 1.0262 -0.8494 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.3976 2.2173 -1.1589 33 1 1.8599 3.2313 -1.1867 34 1 1.8078 1.7187 -2.1238 35 1 0.7847 2.2838 1.5921 36 1 5.3542 2.3561 2.6365 37 1 5.9347 1.5609 1.1535 38 1 6.4926 2.8594 -0.8158 39 1 7.2227 5.0350 -1.7052 40 1 6.8996 7.0813 -0.3764 41 1 5.6665 10.2969 3.9691 42 1 5.0922 4.7663 2.7319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255832696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:36 Heat of formation + Delta-G solvation = -46.994689 kcal Electronic energy + Delta-G solvation = -26814.185977 eV Core-core repulsion = 22953.969409 eV Total energy + Delta-G solvation = -3860.216568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57988 -39.05828 -38.58281 -37.27862 -36.52486 -35.28042 -32.95358 -32.26609 -30.85118 -29.69906 -29.11692 -26.80417 -25.58294 -25.12513 -23.45189 -21.80927 -21.55623 -20.64535 -20.23161 -18.02643 -17.68147 -17.10066 -16.66676 -16.35807 -15.73089 -15.47278 -15.12684 -15.01665 -14.61056 -14.45630 -14.27576 -14.13755 -13.69702 -13.55596 -13.34699 -12.93857 -12.76331 -12.53937 -12.47841 -12.31915 -11.95959 -11.76116 -11.58427 -11.36850 -11.34273 -11.02026 -10.94016 -10.66646 -10.63143 -10.46413 -10.09388 -9.72827 -9.54900 -9.29937 -8.83657 -8.17875 -7.25011 -6.42807 -4.02310 1.60532 1.78816 2.33428 2.52125 3.03773 3.08717 3.13692 3.14497 3.19295 3.80214 3.97368 4.17853 4.38426 4.55691 4.80326 4.89452 4.92526 5.05318 5.12451 5.13202 5.21944 5.37500 5.43995 5.48091 5.51993 5.54402 5.65267 5.69229 5.75693 5.83546 5.86865 5.97058 6.15788 6.36331 6.61241 6.72833 6.89258 7.06055 7.07932 7.27589 7.33951 7.36666 7.43414 7.78446 8.01254 8.17262 9.02085 9.72659 10.75021 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.003229 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.235895 B = 8670.606241 C = 9126.375488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.120 3.880 4 C -0.149 4.149 5 N -0.723 5.723 6 C 0.701 3.299 7 O -0.530 6.530 8 N -0.567 5.567 9 C 0.165 3.835 10 C -0.084 4.084 11 C -0.190 4.190 12 C -0.079 4.079 13 C -0.224 4.224 14 C 0.148 3.852 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.161 4.161 25 C 0.531 3.469 26 O -0.465 6.465 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.436 0.564 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -17.996 -8.316 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.030 3.970 4 C -0.207 4.207 5 N -0.389 5.389 6 C 0.402 3.598 7 O -0.402 6.402 8 N -0.312 5.312 9 C 0.046 3.954 10 C -0.086 4.086 11 C -0.210 4.210 12 C -0.097 4.097 13 C -0.244 4.244 14 C 0.095 3.905 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.181 4.181 25 C 0.318 3.682 26 O -0.335 6.335 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.281 0.719 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.475 -17.698 -7.744 21.096 hybrid contribution 0.029 1.042 -0.264 1.075 sum -8.446 -16.656 -8.008 20.320 Atomic orbital electron populations 1.21808 0.94175 1.02579 1.02417 1.21722 0.97444 0.92284 1.04054 1.21480 0.92451 0.95747 0.87370 1.22042 1.02273 1.00856 0.95575 1.45649 1.07992 1.62749 1.22476 1.15920 0.81059 0.79144 0.83720 1.91057 1.85225 1.43384 1.20543 1.46505 1.08807 1.53981 1.21918 1.20550 0.77629 0.95809 1.01456 1.19368 1.00633 0.93200 0.95361 1.20518 1.06564 0.97394 0.96476 1.20724 0.98339 0.92295 0.98378 1.21241 1.07712 0.99178 0.96273 1.19318 0.92849 0.87903 0.90445 1.83997 1.66192 1.13336 1.44430 1.21317 1.37902 0.84519 1.03167 0.89128 1.25291 0.97035 0.98820 0.95363 1.70052 1.40548 1.28717 1.10219 0.85717 0.79115 0.80197 0.78419 1.19906 1.20226 1.19202 1.20171 1.06757 0.89710 1.01412 1.20729 0.90364 0.76293 0.80854 1.90764 1.59196 1.44970 1.38552 0.91707 0.92417 0.91802 0.90813 0.89352 0.90126 0.91083 0.89874 0.71931 0.87973 0.88268 0.87274 0.87322 0.85501 0.92011 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.41 37.16 0.35 -0.39 16 2 C -0.12 -0.79 5.30 -26.73 -0.14 -0.93 16 3 C 0.12 1.13 1.01 -132.09 -0.13 0.99 16 4 C -0.15 -1.21 8.55 37.16 0.32 -0.90 16 5 N -0.72 -7.54 5.62 -52.93 -0.30 -7.84 16 6 C 0.70 10.46 8.62 -88.02 -0.76 9.70 16 7 O -0.53 -10.00 17.48 5.33 0.09 -9.90 16 8 N -0.57 -8.20 2.59 -122.02 -0.32 -8.51 16 9 C 0.17 2.50 5.82 -5.19 -0.03 2.47 16 10 C -0.08 -1.57 5.46 -104.65 -0.57 -2.15 16 11 C -0.19 -3.44 9.70 -39.53 -0.38 -3.83 16 12 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 13 C -0.22 -5.00 9.17 -39.39 -0.36 -5.36 16 14 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 16 C -0.39 -11.19 9.49 30.88 0.29 -10.90 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 20 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 C -0.16 -3.59 9.65 -39.39 -0.38 -3.97 16 25 C 0.53 6.89 6.98 -10.56 -0.07 6.82 16 26 O -0.47 -6.83 17.76 5.60 0.10 -6.73 16 27 H 0.06 0.27 6.47 -51.93 -0.34 -0.06 16 28 H 0.06 0.27 7.40 -51.93 -0.38 -0.12 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.47 6.49 -51.93 -0.34 0.13 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.44 3.51 8.40 -40.82 -0.34 3.17 16 36 H 0.10 1.50 7.80 -51.93 -0.41 1.09 16 37 H 0.10 1.29 7.95 -51.92 -0.41 0.88 16 38 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.12 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -34.52 357.63 -7.23 -41.75 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.30 Total: 6.10 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.63 Total: -5.88 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.15 Total: -41.33 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.19 Total: -21.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.52 -7.23 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255832696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.247 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds